FvH4_2g06060

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013810
Physical Location & Seq
Forward (+)
5059540 .. 5060794
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06060.t1

Sequence Viewer

Length: 825 bp
ATGCAAAACTCCTTCAAGCGATCCAAATTCGACACTGCCGGAGCTCCACCACAGTTGACCCAAAACCCACTTCCTCCGCCGCCTCCCCATCTCACTCACGACCAAGAACTCGCCGTAATCGTCTCCGCTCTTCAAAACGTCATCGCCGGCACCACCACCACCATGGACTTCAACTCTCTCTTCCCTTCCTACCACTGCCCCACCCTCACTTCCTCCTCATCCTCCGCTCCCGCCCTCCTTGCAGCATCCGACGCCGACACGTGTCCCGTCTGTAACATTAAAGGTTGTCTTGGATGCAATTTTTTCCCGCCACCAGCTCAGGAGGAGAACAACATTAACAGCAACAACAAGAAGGGACCCAAGAAAAGGGTGAAGAAGAACTACAGGGGAGTGAGGCAGCGGCCTTGGGGCAAATGGGCTGCTGAAATCCGAGACCCGAGGAGAGCCACTAGGGTCTGGCTCGGCACCTTCCACACGGCGGAGGAGGCGGCCCGCGCCTACGACAAGGCCGCCATTGAGTTTCGCGGACCCAGAGCCAAACTCAATTTCCCGTTCCCGGACAACTCACTGTCGATGAACCATGAAACTTCAATGACGCCAGCACAGACGCCCATTCAGAAGCAGCAAGTTAATGTTGCTGAAACAAAGCAAGAGACCAAGAGCGAGGATTCAAAGGAAATGGAATCGGCGGGAATGGAATGTGAGTTCTGGGAAAGGATTGGAGAAGACGAGCTGTTTCAACAGTGGATGATGACGATGGACTACGCAGCTGATCACTCGTCGGATTCTGGAAACGGGTCTGCAGGAAATGCTCACAGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

275

Amino Acids

30.37

Weight (kDa)

6.39

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 127 - 176 3.5e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34410
fragaria_vesca FvH4_2g06050 FvH4_2g06060
malus_domestica MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica Prupe.8G125100_v2.0.a1
pyrus_communis pycom05g07360 pycom10g07840
rosa_chinensis RchiOBHm_Chr6g0257181
rosa_laevigata RLG00000014680
rosa_multiflora Rmu_sc0001228.1_g000009
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana Rw6G007980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 149, 464
AccBSI CCGCTC 2 cut(s) 128, 227
AccII CGCG 2 cut(s) 495, 525
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 26
AcvI CACGTG 1 cut(s) 261
AcyI GRCGYC 3 cut(s) 252, 596, 608
AfiI CCNNNNNNNGG 3 cut(s) 366, 478, 556
AflIII ACRYGT 2 cut(s) 258, 260
AgsI TTSAA 6 cut(s) 16, 134, 172, 591, 672, 740
AjuI GAANNNNNNNTTGG 4 cut(s) 54, 86, 530, 562
AloI GAACNNNNNNTCC 2 cut(s) 689, 721
AluBI AGCT 4 cut(s) 44, 317, 733, 770
AluI AGCT 4 cut(s) 44, 317, 733, 770
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 3 cut(s) 127, 426, 647
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 822
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 3 cut(s) 401, 489, 507
ApeKI GCWGC 5 cut(s) 242, 397, 419, 622, 767
ApoI RAATTY 1 cut(s) 26
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 3 cut(s) 356, 490, 527
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 2 cut(s) 356, 527
BanI GGYRCC 2 cut(s) 149, 464
BanII GRGCYC 1 cut(s) 46
BarI GAAGNNNNNNTAC 2 cut(s) 365, 397
BbrPI CACGTG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 732
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 5 cut(s) 254, 406, 409, 634, 779
BccI CCATC 2 cut(s) 96, 751
BceAI ACGGC 2 cut(s) 98, 492
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 1 cut(s) 557
BcoDI GTCTC 3 cut(s) 127, 426, 647
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 2 cut(s) 382, 801
BisI GCNGC 9 cut(s) 80, 243, 398, 401, 420, 489, 510, 623, 768
BlsI GCNGC 9 cut(s) 81, 244, 399, 402, 421, 490, 511, 624, 769
Bme1390I CCNGG 1 cut(s) 557
Bme18I GGWCC 2 cut(s) 356, 527
BmeT110I CYCGRG 1 cut(s) 436
BmgT120I GGNCC 3 cut(s) 356, 490, 527
BmiI GGNNCC 5 cut(s) 151, 357, 358, 466, 529
BmrFI CCNGG 1 cut(s) 557
BmsI GCATC 2 cut(s) 254, 284
BoxI GACNNNNGTC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 732
BplI GAGNNNNNCTC 2 cut(s) 525, 557
Bpu10I CCTNAGC 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 557
BsaAI YACGTR 1 cut(s) 261
BsaHI GRCGYC 3 cut(s) 252, 596, 608
BsaI GGTCTC 2 cut(s) 426, 647
BsaJI CCNNGG 3 cut(s) 162, 404, 437
Bsc4I CCNNNNNNNGG 3 cut(s) 366, 478, 556
Bse118I RCCGGY 1 cut(s) 146
BseDI CCNNGG 3 cut(s) 162, 404, 437
BseGI GGATG 4 cut(s) 218, 245, 299, 753
BseLI CCNNNNNNNGG 3 cut(s) 366, 478, 556
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 4 cut(s) 205, 338, 454, 497
BseXI GCAGC 5 cut(s) 254, 406, 409, 634, 779
Bsh1236I CGCG 2 cut(s) 495, 525
BshFI GGCC 3 cut(s) 403, 491, 509
BshNI GGYRCC 2 cut(s) 149, 464
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 3 cut(s) 39, 147, 557
BslFI GGGAC 2 cut(s) 249, 369
BslI CCNNNNNNNGG 3 cut(s) 366, 478, 556
BsmAI GTCTC 3 cut(s) 127, 426, 647
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 249, 369
BsnI GGCC 3 cut(s) 403, 491, 509
Bso31I GGTCTC 2 cut(s) 426, 647
BsoBI CYCGRG 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 20, 772
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 3 cut(s) 403, 491, 509
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 2 cut(s) 495, 525
BspLI GGNNCC 5 cut(s) 151, 357, 358, 466, 529
BspMAI CTGCAG 1 cut(s) 805
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 135
BspT107I GGYRCC 2 cut(s) 149, 464
BspTNI GGTCTC 2 cut(s) 426, 647
BsrBI CCGCTC 2 cut(s) 128, 227
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 3 cut(s) 162, 404, 437
BssMI GATC 2 cut(s) 20, 772
BssNI GRCGYC 3 cut(s) 252, 596, 608
BssT1I CCWWGG 2 cut(s) 162, 404
Bst4CI ACNGT 4 cut(s) 54, 570, 744, 818
Bst6I CTCTTC 2 cut(s) 135, 185
BstACI GRCGYC 3 cut(s) 252, 596, 608
BstAPI GCANNNNNTGC 1 cut(s) 809
BstBAI YACGTR 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 148, 493, 600
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 4 cut(s) 218, 245, 299, 753
BstFNI CGCG 2 cut(s) 495, 525
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 2 cut(s) 23, 775
BstMAI GTCTC 3 cut(s) 127, 426, 647
BstMBI GATC 2 cut(s) 20, 772
BstMWI GCNNNNNNNGC 5 cut(s) 239, 251, 485, 494, 809
BstPAI GACNNNNGTC 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 2 cut(s) 382, 801
BstUI CGCG 2 cut(s) 495, 525
BstV1I GCAGC 5 cut(s) 254, 406, 409, 634, 779
BstV2I GAAGAC 1 cut(s) 732
BstXI CCANNNNNNTGG 1 cut(s) 163
BsuRI GGCC 3 cut(s) 403, 491, 509
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 127
BtsCI GGATG 4 cut(s) 218, 245, 299, 753
BtsI GCAGTG 2 cut(s) 33, 193
BtsIMutI CAGTG 4 cut(s) 33, 193, 566, 749
Cac8I GCNNGC 3 cut(s) 148, 493, 600
CaiI CAGNNNCTG 1 cut(s) 822
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 356, 490, 527
CseI GACGC 3 cut(s) 260, 604, 616
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 2 cut(s) 163, 581
DdeI CTNAG 1 cut(s) 318
DpnI GATC 2 cut(s) 22, 774
DpnII GATC 2 cut(s) 20, 772
Eam1104I CTCTTC 2 cut(s) 135, 185
EarI CTCTTC 2 cut(s) 135, 185
EciI GGCGGA 2 cut(s) 66, 494
Ecl136II GAGCTC 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 162, 404
Eco24I GRGCYC 1 cut(s) 46
Eco31I GGTCTC 2 cut(s) 426, 647
Eco47I GGWCC 2 cut(s) 356, 527
Eco53kI GAGCTC 1 cut(s) 44
Eco72I CACGTG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 356
EcoT14I CCWWGG 2 cut(s) 162, 404
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 162, 404
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 2 cut(s) 166, 584
FaiI YATR 2 cut(s) 164, 582
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 2 cut(s) 249, 369
FatI CATG 2 cut(s) 162, 580
FauI CCCGC 4 cut(s) 238, 315, 500, 682
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 9 cut(s) 80, 243, 398, 401, 420, 489, 510, 623, 768
FokI GGATG 4 cut(s) 205, 232, 306, 760
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 9 cut(s) 80, 243, 398, 401, 420, 489, 510, 623, 768
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 496
GluI GCNGC 9 cut(s) 80, 243, 398, 401, 420, 489, 510, 623, 768
HaeIII GGCC 3 cut(s) 403, 491, 509
HapII CCGG 3 cut(s) 39, 147, 557
HgaI GACGC 3 cut(s) 260, 604, 616
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 3 cut(s) 252, 596, 608
Hin1II CATG 2 cut(s) 166, 584
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 3 cut(s) 668, 683, 785
HpaII CCGG 3 cut(s) 39, 147, 557
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 4 cut(s) 250, 431, 618, 784
Hpy188III TCNNGA 3 cut(s) 98, 320, 789
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 2 cut(s) 254, 784
HpyAV CCTTC 4 cut(s) 22, 195, 346, 478
HpyCH4III ACNGT 4 cut(s) 54, 570, 744, 818
HpyCH4IV ACGT 2 cut(s) 138, 260
HpyCH4V TGCA 4 cut(s) 4, 242, 297, 803
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 251, 485, 494, 809
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 2 cut(s) 138, 260
Hsp92I GRCGYC 3 cut(s) 252, 596, 608
Hsp92II CATG 2 cut(s) 166, 584
HspAI GCGC 1 cut(s) 495
KflI GGGWCCC 1 cut(s) 356
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 2 cut(s) 20, 772
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 3 cut(s) 41, 49, 232
Lsp1109I GCAGC 5 cut(s) 254, 406, 409, 634, 779
LweI GCATC 2 cut(s) 254, 284
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 138, 260
MaeIII GTNAC 2 cut(s) 272, 818
MalI GATC 2 cut(s) 22, 774
MbiI CCGCTC 2 cut(s) 128, 227
MboI GATC 2 cut(s) 20, 772
MboII GAAGA 5 cut(s) 122, 172, 385, 388, 737
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 3 cut(s) 26, 298, 544
MmeI TCCRAC 2 cut(s) 273, 762
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 3 cut(s) 279, 336, 630
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 2 cut(s) 400, 770
MspI CCGG 3 cut(s) 39, 147, 557
MspR9I CCNGG 1 cut(s) 557
MvnI CGCG 2 cut(s) 495, 525
MwoI GCNNNNNNNGC 5 cut(s) 239, 251, 485, 494, 809
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 557
NcoI CCATGG 1 cut(s) 162
NdeII GATC 2 cut(s) 20, 772
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 166, 584
NlaIV GGNNCC 5 cut(s) 151, 357, 358, 466, 529
NmeAIII GCCGAG 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 3 cut(s) 668, 683, 785
PfoI TCCNGGA 1 cut(s) 555
PkrI GCNGC 9 cut(s) 81, 244, 399, 402, 421, 490, 511, 624, 769
PmaCI CACGTG 1 cut(s) 261
PmlI CACGTG 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 261
PpuMI RGGWCCY 1 cut(s) 356
PshAI GACNNNNGTC 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 356
PspCI CACGTG 1 cut(s) 261
PspN4I GGNNCC 5 cut(s) 151, 357, 358, 466, 529
PspPI GGNCC 3 cut(s) 356, 490, 527
PspPPI RGGWCCY 1 cut(s) 356
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 1 cut(s) 822
PvuII CAGCTG 1 cut(s) 770
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 279, 336, 630
SatI GCNGC 9 cut(s) 80, 243, 398, 401, 420, 489, 510, 623, 768
Sau3AI GATC 2 cut(s) 20, 772
Sau96I GGNCC 3 cut(s) 356, 490, 527
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 1 cut(s) 46
SetI ASST 8 cut(s) 46, 141, 263, 286, 319, 470, 735, 772
SfaNI GCATC 2 cut(s) 254, 284
SfcI CTRYAG 2 cut(s) 382, 801
SinI GGWCC 2 cut(s) 356, 527
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 3 cut(s) 26, 298, 544
SspMI CTAG 1 cut(s) 450
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 555
StyI CCWWGG 2 cut(s) 162, 404
TaaI ACNGT 4 cut(s) 54, 570, 744, 818
TaiI ACGT 2 cut(s) 141, 263
TaqI TCGA 2 cut(s) 30, 572
TasI AATT 3 cut(s) 26, 298, 544
TauI GCSGC 4 cut(s) 82, 403, 491, 512
TfiI GAWTC 3 cut(s) 668, 683, 785
Tru1I TTAA 3 cut(s) 279, 336, 630
Tru9I TTAA 3 cut(s) 279, 336, 630
TscAI CASTG 4 cut(s) 40, 200, 573, 749
TseI GCWGC 5 cut(s) 242, 397, 419, 622, 767
TspDTI ATGAA 2 cut(s) 590, 597
TspRI CASTG 4 cut(s) 40, 200, 573, 749
VpaK11BI GGWCC 2 cut(s) 356, 527
XapI RAATTY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.