Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G34410 |
| fragaria_vesca | FvH4_2g06050 FvH4_2g06060 |
| malus_domestica | MD05G1080900.v1.1 MD10G1094700.v1.1 |
| prunus_persica | Prupe.8G125100_v2.0.a1 |
| pyrus_communis | pycom05g07360 pycom10g07840 |
| rosa_chinensis | RchiOBHm_Chr6g0257181 |
| rosa_laevigata | RLG00000014680 |
| rosa_multiflora | Rmu_sc0001228.1_g000009 |
| rosa_rugosa | Rorug05G0574400 |
| rosa_samantha | Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400 |
| rosa_wichuraiana | Rw6G007980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 611 |
| Acc36I | ACCTGC | 1 cut(s) | 611 |
| AccB1I | GGYRCC | 1 cut(s) | 583 |
| AccII | CGCG | 2 cut(s) | 48, 137 |
| AccIII | TCCGGA | 1 cut(s) | 895 |
| AcsI | RAATTY | 3 cut(s) | 251, 496, 983 |
| AfaI | GTAC | 2 cut(s) | 556, 640 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 169, 781 |
| AflIII | ACRYGT | 1 cut(s) | 609 |
| AgsI | TTSAA | 5 cut(s) | 158, 256, 340, 496, 1001 |
| AjiI | CACGTC | 2 cut(s) | 199, 610 |
| AjnI | CCWGG | 1 cut(s) | 660 |
| AluBI | AGCT | 4 cut(s) | 260, 561, 848, 880 |
| AluI | AGCT | 4 cut(s) | 260, 561, 848, 880 |
| Alw26I | GTCTC | 5 cut(s) | 148, 445, 635, 765, 772 |
| Ama87I | CYCGRG | 4 cut(s) | 632, 775, 789, 831 |
| Aor13HI | TCCGGA | 1 cut(s) | 895 |
| AoxI | GGCC | 6 cut(s) | 72, 369, 695, 740, 828, 866 |
| ApaI | GGGCCC | 1 cut(s) | 76 |
| ApeKI | GCWGC | 6 cut(s) | 524, 561, 656, 736, 758, 848 |
| ApoI | RAATTY | 3 cut(s) | 251, 496, 983 |
| AspLEI | GCGC | 2 cut(s) | 137, 524 |
| AspS9I | GGNCC | 7 cut(s) | 72, 73, 172, 370, 695, 829, 866 |
| AsuC2I | CCSGG | 2 cut(s) | 832, 833 |
| AsuHPI | GGTGA | 4 cut(s) | 106, 403, 721, 922 |
| AsuII | TTCGAA | 1 cut(s) | 451 |
| AvaI | CYCGRG | 4 cut(s) | 632, 775, 789, 831 |
| AvaII | GGWCC | 1 cut(s) | 172 |
| BaeGI | GKGCMC | 1 cut(s) | 76 |
| BanI | GGYRCC | 1 cut(s) | 583 |
| BanII | GRGCYC | 1 cut(s) | 76 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 704, 736 |
| BauI | CACGAG | 1 cut(s) | 67 |
| BbvCI | CCTCAGC | 1 cut(s) | 819 |
| BbvI | GCAGC | 6 cut(s) | 511, 548, 668, 745, 748, 835 |
| BccI | CCATC | 1 cut(s) | 106 |
| BceAI | ACGGC | 3 cut(s) | 148, 571, 831 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 830, 864 |
| BciT130I | CCWGG | 1 cut(s) | 662 |
| BcnI | CCSGG | 2 cut(s) | 832, 833 |
| BcoDI | GTCTC | 5 cut(s) | 148, 445, 635, 765, 772 |
| BfaI | CTAG | 3 cut(s) | 305, 558, 800 |
| BfmI | CTRYAG | 1 cut(s) | 721 |
| BfuAI | ACCTGC | 1 cut(s) | 611 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 368 |
| BisI | GCNGC | 9 cut(s) | 480, 525, 562, 657, 737, 740, 759, 828, 849 |
| BlsI | GCNGC | 9 cut(s) | 481, 526, 563, 658, 738, 741, 760, 829, 850 |
| BmcAI | AGTACT | 1 cut(s) | 556 |
| Bme1390I | CCNGG | 3 cut(s) | 662, 832, 833 |
| Bme18I | GGWCC | 1 cut(s) | 172 |
| BmeT110I | CYCGRG | 4 cut(s) | 632, 775, 789, 831 |
| BmgBI | CACGTC | 2 cut(s) | 199, 610 |
| BmgT120I | GGNCC | 7 cut(s) | 72, 73, 172, 370, 695, 829, 866 |
| BmiI | GGNNCC | 6 cut(s) | 74, 75, 372, 469, 585, 867 |
| BmrFI | CCNGG | 3 cut(s) | 662, 832, 833 |
| BmrI | ACTGGG | 1 cut(s) | 71 |
| BmsI | GCATC | 2 cut(s) | 1053, 1060 |
| BmuI | ACTGGG | 1 cut(s) | 71 |
| BoxI | GACNNNNGTC | 1 cut(s) | 791 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 864, 896 |
| BpmI | CTGGAG | 1 cut(s) | 550 |
| Bpu10I | CCTNAGC | 1 cut(s) | 819 |
| Bpu14I | TTCGAA | 1 cut(s) | 451 |
| BpuMI | CCSGG | 2 cut(s) | 832, 833 |
| BsaI | GGTCTC | 1 cut(s) | 765 |
| BsaJI | CCNNGG | 4 cut(s) | 486, 660, 743, 831 |
| BsaWI | WCCGGW | 1 cut(s) | 895 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 520, 550 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 169, 781 |
| Bse1I | ACTGG | 2 cut(s) | 77, 1038 |
| BseAI | TCCGGA | 1 cut(s) | 895 |
| BseBI | CCWGG | 1 cut(s) | 662 |
| BseDI | CCNNGG | 4 cut(s) | 486, 660, 743, 831 |
| BseGI | GGATG | 3 cut(s) | 201, 1062, 1075 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 169, 781 |
| BseMII | CTCAG | 1 cut(s) | 810 |
| BseNI | ACTGG | 2 cut(s) | 77, 1038 |
| BseRI | GAGGAG | 3 cut(s) | 366, 494, 836 |
| BseSI | GKGCMC | 1 cut(s) | 76 |
| BseXI | GCAGC | 6 cut(s) | 511, 548, 668, 745, 748, 835 |
| BseYI | CCCAGC | 1 cut(s) | 354 |
| Bsh1236I | CGCG | 2 cut(s) | 48, 137 |
| Bsh1285I | CGRYCG | 1 cut(s) | 855 |
| BshFI | GGCC | 6 cut(s) | 74, 371, 697, 742, 830, 868 |
| BshNI | GGYRCC | 1 cut(s) | 583 |
| BsiEI | CGRYCG | 1 cut(s) | 855 |
| BsiHKCI | CYCGRG | 4 cut(s) | 632, 775, 789, 831 |
| BsiSI | CCGG | 2 cut(s) | 832, 896 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 169, 781 |
| BsmAI | GTCTC | 5 cut(s) | 148, 445, 635, 765, 772 |
| BsmBI | CGTCTC | 1 cut(s) | 772 |
| BsnI | GGCC | 6 cut(s) | 74, 371, 697, 742, 830, 868 |
| Bso31I | GGTCTC | 1 cut(s) | 765 |
| BsoBI | CYCGRG | 4 cut(s) | 632, 775, 789, 831 |
| Bsp119I | TTCGAA | 1 cut(s) | 451 |
| Bsp120I | GGGCCC | 1 cut(s) | 72 |
| Bsp1286I | GDGCHC | 1 cut(s) | 76 |
| Bsp13I | TCCGGA | 1 cut(s) | 895 |
| Bsp143I | GATC | 2 cut(s) | 418, 852 |
| BspANI | GGCC | 6 cut(s) | 74, 371, 697, 742, 830, 868 |
| BspCNI | CTCAG | 1 cut(s) | 811 |
| BspEI | TCCGGA | 1 cut(s) | 895 |
| BspFNI | CGCG | 2 cut(s) | 48, 137 |
| BspLI | GGNNCC | 6 cut(s) | 74, 75, 372, 469, 585, 867 |
| BspMI | ACCTGC | 1 cut(s) | 611 |
| BspT104I | TTCGAA | 1 cut(s) | 451 |
| BspT107I | GGYRCC | 1 cut(s) | 583 |
| BspTNI | GGTCTC | 1 cut(s) | 765 |
| BsrI | ACTGG | 2 cut(s) | 77, 1038 |
| BssECI | CCNNGG | 4 cut(s) | 486, 660, 743, 831 |
| BssMI | GATC | 2 cut(s) | 418, 852 |
| BssSI | CACGAG | 1 cut(s) | 67 |
| BssT1I | CCWWGG | 1 cut(s) | 743 |
| Bst2BI | CACGAG | 1 cut(s) | 67 |
| Bst2UI | CCWGG | 1 cut(s) | 662 |
| Bst4CI | ACNGT | 3 cut(s) | 172, 433, 1053 |
| Bst6I | CTCTTC | 2 cut(s) | 698, 1032 |
| BstBI | TTCGAA | 1 cut(s) | 451 |
| BstC8I | GCNNGC | 2 cut(s) | 360, 654 |
| BstDEI | CTNAG | 1 cut(s) | 819 |
| BstDSI | CCRYGG | 1 cut(s) | 486 |
| BstEII | GGTNACC | 1 cut(s) | 910 |
| BstF5I | GGATG | 3 cut(s) | 201, 1062, 1075 |
| BstFNI | CGCG | 2 cut(s) | 48, 137 |
| BstHHI | GCGC | 2 cut(s) | 137, 524 |
| BstKTI | GATC | 2 cut(s) | 421, 855 |
| BstMAI | GTCTC | 5 cut(s) | 148, 445, 635, 765, 772 |
| BstMBI | GATC | 2 cut(s) | 418, 852 |
| BstMCI | CGRYCG | 1 cut(s) | 855 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 340, 368, 470, 479, 567, 612, 824, 833 |
| BstNI | CCWGG | 1 cut(s) | 662 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 791 |
| BstPI | GGTNACC | 1 cut(s) | 910 |
| BstSCI | CCNGG | 3 cut(s) | 660, 830, 831 |
| BstSFI | CTRYAG | 1 cut(s) | 721 |
| BstSLI | GKGCMC | 1 cut(s) | 76 |
| BstUI | CGCG | 2 cut(s) | 48, 137 |
| BstV1I | GCAGC | 6 cut(s) | 511, 548, 668, 745, 748, 835 |
| BsuRI | GGCC | 6 cut(s) | 74, 371, 697, 742, 830, 868 |
| BtgI | CCRYGG | 1 cut(s) | 486 |
| BtgZI | GCGATG | 1 cut(s) | 63 |
| BtrI | CACGTC | 2 cut(s) | 199, 610 |
| BtsCI | GGATG | 3 cut(s) | 201, 1062, 1075 |
| BtsI | GCAGTG | 1 cut(s) | 175 |
| BtsIMutI | CAGTG | 3 cut(s) | 84, 175, 1058 |
| BveI | ACCTGC | 1 cut(s) | 611 |
| Cac8I | GCNNGC | 2 cut(s) | 360, 654 |
| CfoI | GCGC | 2 cut(s) | 137, 524 |
| Cfr13I | GGNCC | 7 cut(s) | 72, 73, 172, 370, 695, 829, 866 |
| Cfr9I | CCCGGG | 1 cut(s) | 831 |
| Csp6I | GTAC | 2 cut(s) | 555, 639 |
| CviAII | CATG | 1 cut(s) | 316 |
| CviQI | GTAC | 2 cut(s) | 555, 639 |
| DdeI | CTNAG | 1 cut(s) | 819 |
| DpnI | GATC | 2 cut(s) | 420, 854 |
| DpnII | GATC | 2 cut(s) | 418, 852 |
| Eam1104I | CTCTTC | 2 cut(s) | 698, 1032 |
| EarI | CTCTTC | 2 cut(s) | 698, 1032 |
| Eco130I | CCWWGG | 1 cut(s) | 743 |
| Eco24I | GRGCYC | 1 cut(s) | 76 |
| Eco31I | GGTCTC | 1 cut(s) | 765 |
| Eco47I | GGWCC | 1 cut(s) | 172 |
| Eco88I | CYCGRG | 4 cut(s) | 632, 775, 789, 831 |
| Eco91I | GGTNACC | 1 cut(s) | 910 |
| EcoO109I | RGGNCCY | 1 cut(s) | 73 |
| EcoO65I | GGTNACC | 1 cut(s) | 910 |
| EcoRI | GAATTC | 1 cut(s) | 496 |
| EcoRII | CCWGG | 1 cut(s) | 660 |
| EcoT14I | CCWWGG | 1 cut(s) | 743 |
| EcoT38I | GRGCYC | 1 cut(s) | 76 |
| ErhI | CCWWGG | 1 cut(s) | 743 |
| Esp3I | CGTCTC | 1 cut(s) | 772 |
| FaeI | CATG | 1 cut(s) | 319 |
| FatI | CATG | 1 cut(s) | 315 |
| FauI | CCCGC | 5 cut(s) | 155, 233, 413, 548, 657 |
| Fnu4HI | GCNGC | 9 cut(s) | 480, 525, 562, 657, 737, 740, 759, 828, 849 |
| FokI | GGATG | 3 cut(s) | 188, 1069, 1082 |
| FriOI | GRGCYC | 1 cut(s) | 76 |
| Fsp4HI | GCNGC | 9 cut(s) | 480, 525, 562, 657, 737, 740, 759, 828, 849 |
| FspBI | CTAG | 3 cut(s) | 305, 558, 800 |
| GlaI | GCGC | 2 cut(s) | 136, 523 |
| GluI | GCNGC | 9 cut(s) | 480, 525, 562, 657, 737, 740, 759, 828, 849 |
| GsaI | CCCAGC | 1 cut(s) | 358 |
| GsuI | CTGGAG | 1 cut(s) | 550 |
| HaeIII | GGCC | 6 cut(s) | 74, 371, 697, 742, 830, 868 |
| HapII | CCGG | 2 cut(s) | 832, 896 |
| HhaI | GCGC | 2 cut(s) | 137, 524 |
| Hin1II | CATG | 1 cut(s) | 319 |
| Hin6I | GCGC | 2 cut(s) | 135, 522 |
| HinP1I | GCGC | 2 cut(s) | 135, 522 |
| HincII | GTYRAC | 1 cut(s) | 43 |
| HindII | GTYRAC | 1 cut(s) | 43 |
| HindIII | AAGCTT | 1 cut(s) | 258 |
| HinfI | GANTC | 6 cut(s) | 158, 336, 350, 766, 787, 1091 |
| HpaII | CCGG | 2 cut(s) | 832, 896 |
| HphI | GGTGA | 4 cut(s) | 106, 403, 721, 922 |
| Hpy166II | GTNNAC | 5 cut(s) | 43, 175, 196, 490, 639 |
| Hpy188I | TCNGA | 3 cut(s) | 349, 592, 1090 |
| Hpy188III | TCNNGA | 5 cut(s) | 305, 422, 770, 896, 1095 |
| Hpy8I | GTNNAC | 5 cut(s) | 43, 175, 196, 490, 639 |
| Hpy99I | CGWCG | 4 cut(s) | 461, 464, 611, 1009 |
| HpyAV | CCTTC | 4 cut(s) | 127, 333, 399, 1012 |
| HpyCH4III | ACNGT | 3 cut(s) | 172, 433, 1053 |
| HpyCH4IV | ACGT | 4 cut(s) | 111, 198, 456, 609 |
| HpyCH4V | TGCA | 2 cut(s) | 319, 615 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 340, 368, 470, 479, 567, 612, 824, 833 |
| HpyF3I | CTNAG | 1 cut(s) | 819 |
| HpySE526I | ACGT | 4 cut(s) | 111, 198, 456, 609 |
| Hsp92II | CATG | 1 cut(s) | 319 |
| HspAI | GCGC | 2 cut(s) | 135, 522 |
| Kpn2I | TCCGGA | 1 cut(s) | 895 |
| Kzo9I | GATC | 2 cut(s) | 418, 852 |
| LmnI | GCTCC | 2 cut(s) | 507, 569 |
| Lsp1109I | GCAGC | 6 cut(s) | 511, 548, 668, 745, 748, 835 |
| LweI | GCATC | 2 cut(s) | 1053, 1060 |
| MaeI | CTAG | 3 cut(s) | 305, 558, 800 |
| MaeII | ACGT | 4 cut(s) | 111, 198, 456, 609 |
| MaeIII | GTNAC | 6 cut(s) | 5, 112, 683, 910, 955, 1029 |
| MalI | GATC | 2 cut(s) | 420, 854 |
| MboI | GATC | 2 cut(s) | 418, 852 |
| MboII | GAAGA | 7 cut(s) | 4, 712, 715, 724, 727, 1049, 1077 |
| MhlI | GDGCHC | 1 cut(s) | 76 |
| MluCI | AATT | 8 cut(s) | 91, 251, 435, 496, 883, 925, 983, 1081 |
| MlyI | GAGTC | 2 cut(s) | 344, 781 |
| MmeI | TCCRAC | 2 cut(s) | 372, 1072 |
| MroI | TCCGGA | 1 cut(s) | 895 |
| MslI | CAYNNNNRTG | 1 cut(s) | 517 |
| MspA1I | CMGCKG | 1 cut(s) | 739 |
| MspI | CCGG | 2 cut(s) | 832, 896 |
| MspR9I | CCNGG | 3 cut(s) | 662, 832, 833 |
| MvaI | CCWGG | 1 cut(s) | 662 |
| MvnI | CGCG | 2 cut(s) | 48, 137 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 340, 368, 470, 479, 567, 612, 824, 833 |
| NciI | CCSGG | 2 cut(s) | 832, 833 |
| NdeII | GATC | 2 cut(s) | 418, 852 |
| NlaIII | CATG | 1 cut(s) | 319 |
| NlaIV | GGNNCC | 6 cut(s) | 74, 75, 372, 469, 585, 867 |
| NmeAIII | GCCGAG | 2 cut(s) | 347, 787 |
| NmuCI | GTSAC | 2 cut(s) | 112, 910 |
| NspV | TTCGAA | 1 cut(s) | 451 |
| PaqCI | CACCTGC | 1 cut(s) | 611 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PfeI | GAWTC | 4 cut(s) | 158, 336, 766, 1091 |
| PkrI | GCNGC | 9 cut(s) | 481, 526, 563, 658, 738, 741, 760, 829, 850 |
| Ple19I | CGATCG | 1 cut(s) | 855 |
| PleI | GAGTC | 2 cut(s) | 344, 781 |
| PpsI | GAGTC | 2 cut(s) | 344, 781 |
| PshAI | GACNNNNGTC | 1 cut(s) | 791 |
| Psp6I | CCWGG | 1 cut(s) | 660 |
| PspEI | GGTNACC | 1 cut(s) | 910 |
| PspFI | CCCAGC | 1 cut(s) | 354 |
| PspGI | CCWGG | 1 cut(s) | 660 |
| PspN4I | GGNNCC | 6 cut(s) | 74, 75, 372, 469, 585, 867 |
| PspOMI | GGGCCC | 1 cut(s) | 72 |
| PspPI | GGNCC | 7 cut(s) | 72, 73, 172, 370, 695, 829, 866 |
| PvuI | CGATCG | 1 cut(s) | 855 |
| RsaI | GTAC | 2 cut(s) | 556, 640 |
| RsaNI | GTAC | 2 cut(s) | 555, 639 |
| RseI | CAYNNNNRTG | 1 cut(s) | 517 |
| SatI | GCNGC | 9 cut(s) | 480, 525, 562, 657, 737, 740, 759, 828, 849 |
| Sau3AI | GATC | 2 cut(s) | 418, 852 |
| Sau96I | GGNCC | 7 cut(s) | 72, 73, 172, 370, 695, 829, 866 |
| ScaI | AGTACT | 1 cut(s) | 556 |
| SchI | GAGTC | 2 cut(s) | 344, 781 |
| ScrFI | CCNGG | 3 cut(s) | 662, 832, 833 |
| SduI | GDGCHC | 1 cut(s) | 76 |
| SfaNI | GCATC | 2 cut(s) | 1053, 1060 |
| SfcI | CTRYAG | 1 cut(s) | 721 |
| SfuI | TTCGAA | 1 cut(s) | 451 |
| SinI | GGWCC | 1 cut(s) | 172 |
| SmaI | CCCGGG | 1 cut(s) | 833 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 517 |
| SrfI | GCCCGGGC | 1 cut(s) | 833 |
| Sse9I | AATT | 8 cut(s) | 91, 251, 435, 496, 883, 925, 983, 1081 |
| SspMI | CTAG | 3 cut(s) | 305, 558, 800 |
| StyD4I | CCNGG | 3 cut(s) | 660, 830, 831 |
| StyI | CCWWGG | 1 cut(s) | 743 |
| TaaI | ACNGT | 3 cut(s) | 172, 433, 1053 |
| TaiI | ACGT | 4 cut(s) | 114, 201, 459, 612 |
| TaqI | TCGA | 4 cut(s) | 451, 769, 855, 981 |
| TasI | AATT | 8 cut(s) | 91, 251, 435, 496, 883, 925, 983, 1081 |
| TatI | WGTACW | 2 cut(s) | 554, 638 |
| TauI | GCSGC | 3 cut(s) | 482, 742, 830 |
| TfiI | GAWTC | 4 cut(s) | 158, 336, 766, 1091 |
| TscAI | CASTG | 3 cut(s) | 84, 182, 1058 |
| TseFI | GTSAC | 2 cut(s) | 112, 910 |
| TseI | GCWGC | 6 cut(s) | 524, 561, 656, 736, 758, 848 |
| Tsp45I | GTSAC | 2 cut(s) | 112, 910 |
| TspDTI | ATGAA | 6 cut(s) | 4, 66, 315, 918, 1031, 1094 |
| TspGWI | ACGGA | 3 cut(s) | 369, 475, 879 |
| TspMI | CCCGGG | 1 cut(s) | 831 |
| TspRI | CASTG | 3 cut(s) | 84, 182, 1058 |
| VpaK11BI | GGWCC | 1 cut(s) | 172 |
| XapI | RAATTY | 3 cut(s) | 251, 496, 983 |
| XbaI | TCTAGA | 1 cut(s) | 304 |
| XmaI | CCCGGG | 1 cut(s) | 831 |
| XspI | CTAG | 3 cut(s) | 305, 558, 800 |
| ZrmI | AGTACT | 1 cut(s) | 556 |