Rh6CG079800

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013810
Physical Location & Seq
Forward (+)
8627363 .. 8628909
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG079800.1

Sequence Viewer

Length: 813 bp
ATGCAAAACTCCTTCAATCGATCCAAACTCGACACTGCCGGAGATCCACAACAGTTGACCCAAAACCCACTTCCTCCTCCGCCGCCTCGCCGCCTCACCCAAGAGCAAGAACTCGCCGTAATCGTCTCCGCTCTACGAAACGTCGTCGCCGGCACCACCACCACCACCACCATGGACTTCAACTCTCTCTTCCCTTCCTACCATTACCCGGCCGCCGCTTCCTCCTCCTCCTCTCCCGCCCTATTCGAAGCGTCTGATGCCGAGACGTGTCCGGTTTGTAAAATTCAAGGCTGCCTTGGATGCAATTTTTTCCCGCCAGCACAGGAGGAGAACAGCAACAACAAGAAGAAGGCACCCAAGAAGAGGCTGAAGAAGAATTACAGGGGAGTGAGGCAGCGGCCTTGGGGCAAATGGGCCGCCGAAATCAGAGACCCGAGGAGGGCCACTAGGGTCTGGCTCGGCACGTTCCACACTGCCGAGGAGGCGGCCCGTGCATATGACAAGGCTGCCATTGAGTTTCGCGGTCCCAGAGCGAAACTCAATTTCCCGTTTCCGGATAACTCATTGTCGATGAACCAAGAAACTTCGACGCCGCCCACACAGCCCATTCAAGAACCCCAGAAGCAGCAGATGGTTGTTACAGATACTAAGCAAGAGAACAAGAGCAAGGATTCAAATGAAATGGAATGTGAGTTCTGGGAAAGGATCGGGGAAGACGAGCTGTTTCAACAGTGGATGATGACGATGGACTACGCACCTGATCATTCGTCGGATTCTGGGAATGGGTCTGCCGGAAATGCTCACAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

270

Amino Acids

30.34

Weight (kDa)

6.91

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 126 - 175 3.4e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34410
fragaria_vesca FvH4_2g06050 FvH4_2g06060
malus_domestica MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica Prupe.8G125100_v2.0.a1
pyrus_communis pycom05g07360 pycom10g07840
rosa_chinensis RchiOBHm_Chr6g0257181
rosa_laevigata RLG00000014680
rosa_multiflora Rmu_sc0001228.1_g000009
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana Rw6G007980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 152, 352
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 1 cut(s) 522
AccIII TCCGGA 1 cut(s) 553
AclWI GGATC 3 cut(s) 15, 38, 713
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 590
AfiI CCNNNNNNNGG 4 cut(s) 208, 363, 439, 553
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 6 cut(s) 16, 181, 287, 611, 675, 728
AjiI CACGTC 1 cut(s) 267
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AloI GAACNNNNNNTCC 2 cut(s) 677, 709
AluBI AGCT 1 cut(s) 721
AluI AGCT 1 cut(s) 721
Alw26I GTCTC 3 cut(s) 130, 257, 423
AlwI GGATC 3 cut(s) 15, 38, 713
Ama87I CYCGRG 1 cut(s) 433
Aor13HI TCCGGA 1 cut(s) 553
AoxI GGCC 5 cut(s) 210, 398, 414, 441, 486
ApeKI GCWGC 4 cut(s) 291, 394, 506, 625
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 4 cut(s) 414, 441, 487, 524
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 246
AvaI CYCGRG 1 cut(s) 433
AvaII GGWCC 1 cut(s) 524
BanI GGYRCC 2 cut(s) 152, 352
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BbsI GAAGAC 1 cut(s) 720
BbvI GCAGC 4 cut(s) 278, 406, 493, 637
BccI CCATC 2 cut(s) 625, 739
BceAI ACGGC 1 cut(s) 101
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 3 cut(s) 130, 257, 423
BfaI CTAG 1 cut(s) 447
BglI GCCNNNNNGGC 1 cut(s) 482
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 524
BmeT110I CYCGRG 1 cut(s) 433
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 4 cut(s) 414, 441, 487, 524
BmiI GGNNCC 3 cut(s) 154, 354, 526
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 2 cut(s) 247, 290
BpiI GAAGAC 1 cut(s) 720
BplI GAGNNNNNCTC 2 cut(s) 522, 554
Bpu14I TTCGAA 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 590
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 5 cut(s) 171, 295, 401, 434, 477
BsaWI WCCGGW 2 cut(s) 271, 553
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 363, 439, 553
Bse118I RCCGGY 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 553
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 5 cut(s) 171, 295, 401, 434, 477
BseGI GGATG 2 cut(s) 305, 741
BseLI CCNNNNNNNGG 4 cut(s) 208, 363, 439, 553
BseRI GAGGAG 7 cut(s) 66, 214, 217, 220, 341, 451, 494
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 4 cut(s) 278, 406, 493, 637
Bsh1236I CGCG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 213
BshFI GGCC 5 cut(s) 212, 400, 416, 443, 488
BshNI GGYRCC 2 cut(s) 152, 352
BshVI ATCGAT 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 6 cut(s) 39, 150, 209, 272, 554, 792
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 4 cut(s) 208, 363, 439, 553
BsmAI GTCTC 3 cut(s) 130, 257, 423
BsmBI CGTCTC 2 cut(s) 130, 257
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 5 cut(s) 212, 400, 416, 443, 488
Bso31I GGTCTC 1 cut(s) 423
BsoBI CYCGRG 1 cut(s) 433
Bsp119I TTCGAA 1 cut(s) 246
Bsp13I TCCGGA 1 cut(s) 553
Bsp143I GATC 4 cut(s) 20, 43, 705, 760
Bsp19I CCATGG 1 cut(s) 171
BspANI GGCC 5 cut(s) 212, 400, 416, 443, 488
BspDI ATCGAT 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 553
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 3 cut(s) 154, 354, 526
BspPI GGATC 3 cut(s) 15, 38, 713
BspT104I TTCGAA 1 cut(s) 246
BspT107I GGYRCC 2 cut(s) 152, 352
BspTNI GGTCTC 1 cut(s) 423
BsrBI CCGCTC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 5 cut(s) 171, 295, 401, 434, 477
BssMI GATC 4 cut(s) 20, 43, 705, 760
BssNI GRCGYC 1 cut(s) 590
BssT1I CCWWGG 3 cut(s) 171, 295, 401
Bst4CI ACNGT 3 cut(s) 54, 732, 806
Bst6I CTCTTC 2 cut(s) 194, 356
BstACI GRCGYC 1 cut(s) 590
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 151, 318
BstDEI CTNAG 1 cut(s) 648
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 305, 741
BstFNI CGCG 1 cut(s) 522
BstKTI GATC 4 cut(s) 23, 46, 708, 763
BstMAI GTCTC 3 cut(s) 130, 257, 423
BstMBI GATC 4 cut(s) 20, 43, 705, 760
BstMCI CGRYCG 1 cut(s) 213
BstMWI GCNNNNNNNGC 6 cut(s) 257, 300, 482, 491, 601, 797
BstSCI CCNGG 1 cut(s) 207
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 4 cut(s) 278, 406, 493, 637
BstV2I GAAGAC 1 cut(s) 720
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 172
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 5 cut(s) 212, 400, 416, 443, 488
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 171
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 2 cut(s) 305, 741
BtsI GCAGTG 2 cut(s) 33, 471
BtsIMutI CAGTG 3 cut(s) 33, 471, 737
Cac8I GCNNGC 2 cut(s) 151, 318
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 4 cut(s) 414, 441, 487, 524
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 2 cut(s) 240, 598
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 172
DdeI CTNAG 1 cut(s) 648
DpnI GATC 4 cut(s) 22, 45, 707, 762
DpnII GATC 4 cut(s) 20, 43, 705, 760
EaeI YGGCCR 1 cut(s) 210
EagI CGGCCG 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 194, 356
EarI CTCTTC 2 cut(s) 194, 356
EciI GGCGGA 1 cut(s) 69
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 3 cut(s) 171, 295, 401
Eco31I GGTCTC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 524
Eco52I CGGCCG 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 433
EcoT14I CCWWGG 3 cut(s) 171, 295, 401
ErhI CCWWGG 3 cut(s) 171, 295, 401
Esp3I CGTCTC 2 cut(s) 130, 257
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 173, 496, 498
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 1 cut(s) 510
FatI CATG 1 cut(s) 171
FauI CCCGC 2 cut(s) 244, 321
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 760
FokI GGATG 2 cut(s) 312, 748
FspBI CTAG 1 cut(s) 447
HaeIII GGCC 5 cut(s) 212, 400, 416, 443, 488
HapII CCGG 6 cut(s) 39, 150, 209, 272, 554, 792
HgaI GACGC 2 cut(s) 240, 598
Hin1I GRCGYC 1 cut(s) 590
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 671, 773
HpaII CCGG 6 cut(s) 39, 150, 209, 272, 554, 792
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 256, 428, 772
Hpy188III TCNNGA 2 cut(s) 554, 611
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 4 cut(s) 146, 149, 592, 772
HpyAV CCTTC 3 cut(s) 22, 204, 343
HpyCH4III ACNGT 3 cut(s) 54, 732, 806
HpyCH4IV ACGT 3 cut(s) 141, 266, 464
HpyCH4V TGCA 3 cut(s) 4, 303, 494
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 300, 482, 491, 601, 797
HpyF3I CTNAG 1 cut(s) 648
HpySE526I ACGT 3 cut(s) 141, 266, 464
Hsp92I GRCGYC 1 cut(s) 590
Hsp92II CATG 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 553
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 4 cut(s) 20, 43, 705, 760
Lsp1109I GCAGC 4 cut(s) 278, 406, 493, 637
LweI GCATC 2 cut(s) 247, 290
MaeI CTAG 1 cut(s) 447
MaeII ACGT 3 cut(s) 141, 266, 464
MaeIII GTNAC 1 cut(s) 637
MalI GATC 4 cut(s) 22, 45, 707, 762
MbiI CCGCTC 1 cut(s) 131
MboI GATC 4 cut(s) 20, 43, 705, 760
MboII GAAGA 6 cut(s) 181, 358, 373, 382, 385, 725
MflI RGATCY 1 cut(s) 43
MluCI AATT 4 cut(s) 282, 304, 376, 541
MmeI TCCRAC 1 cut(s) 750
MroI TCCGGA 1 cut(s) 553
MroNI GCCGGC 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 397
MspI CCGG 6 cut(s) 39, 150, 209, 272, 554, 792
MspR9I CCNGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 6 cut(s) 257, 300, 482, 491, 601, 797
NaeI GCCGGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 209
NcoI CCATGG 1 cut(s) 171
NdeI CATATG 1 cut(s) 496
NdeII GATC 4 cut(s) 20, 43, 705, 760
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 3 cut(s) 154, 354, 526
NmeAIII GCCGAG 3 cut(s) 286, 438, 502
NspV TTCGAA 1 cut(s) 246
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 714
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 671, 773
PspN4I GGNNCC 3 cut(s) 154, 354, 526
PspPI GGNCC 4 cut(s) 414, 441, 487, 524
PsuI RGATCY 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 170
Sau3AI GATC 4 cut(s) 20, 43, 705, 760
Sau96I GGNCC 4 cut(s) 414, 441, 487, 524
ScrFI CCNGG 1 cut(s) 209
SetI ASST 5 cut(s) 144, 269, 467, 723, 760
SfaNI GCATC 2 cut(s) 247, 290
SfuI TTCGAA 1 cut(s) 246
SinI GGWCC 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 4 cut(s) 282, 304, 376, 541
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 3 cut(s) 171, 295, 401
TaaI ACNGT 3 cut(s) 54, 732, 806
TaiI ACGT 3 cut(s) 144, 269, 467
TaqI TCGA 5 cut(s) 19, 30, 246, 569, 587
TasI AATT 4 cut(s) 282, 304, 376, 541
TauI GCSGC 8 cut(s) 85, 93, 215, 218, 400, 419, 488, 595
TfiI GAWTC 2 cut(s) 671, 773
TscAI CASTG 3 cut(s) 40, 478, 737
TseI GCWGC 4 cut(s) 291, 394, 506, 625
TspDTI ATGAA 2 cut(s) 587, 693
TspRI CASTG 3 cut(s) 40, 478, 737
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 1 cut(s) 282
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.