FvH4_2g06050

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013810
Physical Location & Seq
Forward (+)
5053426 .. 5054465
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06050.t1

Sequence Viewer

Length: 723 bp
ATGCAAAACATCTTCAAGCGATCCAAACTCGACACCGCCGGAGCACCACCAAAGTCGACCGGAAACCCACTTCCTCCGCCGCCTCTCCGCCTCACCCACGAGCAAGAACTCGCCGTAATCGTCTCAGCTCTCCGTAACGTCATCGCCGGCACCACCACCACCATGGACTTCAACTCGCTCTTCCCTTCCTACCACATCCTTGCAGCATCCGACGCCGATCGTTGTCCTGTTTGTAACATCAAAGGTTGTCTTGGATGCAATTTTTTCCCGCCACCAGCTCAGGAGGAGAACAACATTAACAGCAGCAACAAGAAGGGACCCAAAAAGAGGGTGAAGAAGAACTACAGGGGAGTGAGGCAGCGGCCTTGGGGAAAATGGGCCGCCGAAATCCGAGACCCGAGAAGAGCCACTCGGGTCTGGCTCGGCACTTTCCACACGGCCGAGGAGGCGGCCCGCGCCTACGACAAGGCCGCCATTGAGTTTCGCGGACCCAGAGCGAAACTCAATTTCCCGTTCCCGGATAACTCGCCAGCACAGGCGCCCATTCAAGTACTACCTCAGAAGCAGCCAGTAGTTGTTGCCGAGACAAAGCAAGAGACCAAGAGCGTGGAATATTCAAAGGAAATGGAATCGGCGGGAATGGAAAGTGAGTTCTGGGAAAGAATTGGAGAAGACGAGTTGTTTCAACGGTGGATGATGACGGACTACGGATGCATGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

241

Amino Acids

27.05

Weight (kDa)

9.19

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 114 - 163 2.8e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34410
fragaria_vesca FvH4_2g06050 FvH4_2g06060
malus_domestica MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica Prupe.8G125100_v2.0.a1
pyrus_communis pycom05g07360 pycom10g07840
rosa_chinensis RchiOBHm_Chr6g0257181
rosa_laevigata RLG00000014680
rosa_multiflora Rmu_sc0001228.1_g000009
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana Rw6G007980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 149, 538
AccI GTMKAC 1 cut(s) 56
AccII CGCG 2 cut(s) 456, 486
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 438
AcyI GRCGYC 2 cut(s) 213, 539
AfaI GTAC 1 cut(s) 552
AfiI CCNNNNNNNGG 2 cut(s) 327, 517
AgsI TTSAA 5 cut(s) 16, 172, 548, 618, 686
AloI GAACNNNNNNTCC 2 cut(s) 635, 667
AluBI AGCT 2 cut(s) 128, 278
AluI AGCT 2 cut(s) 128, 278
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 4 cut(s) 127, 387, 578, 590
AlwI GGATC 1 cut(s) 15
Ama87I CYCGRG 2 cut(s) 397, 411
AoxI GGCC 5 cut(s) 362, 378, 438, 450, 468
ApeKI GCWGC 4 cut(s) 203, 303, 358, 565
AspLEI GCGC 2 cut(s) 458, 541
AspS9I GGNCC 4 cut(s) 317, 378, 451, 488
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 85, 343
AvaI CYCGRG 2 cut(s) 397, 411
AvaII GGWCC 2 cut(s) 317, 488
BanI GGYRCC 2 cut(s) 149, 538
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 4 cut(s) 215, 315, 370, 577
BceAI ACGGC 2 cut(s) 98, 453
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 4 cut(s) 127, 387, 578, 590
BfmI CTRYAG 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 542
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 9 cut(s) 80, 204, 304, 359, 362, 381, 450, 471, 566
BlsI GCNGC 9 cut(s) 81, 205, 305, 360, 363, 382, 451, 472, 567
BmcAI AGTACT 1 cut(s) 552
Bme1390I CCNGG 1 cut(s) 518
Bme18I GGWCC 2 cut(s) 317, 488
BmeT110I CYCGRG 2 cut(s) 397, 411
BmgT120I GGNCC 4 cut(s) 317, 378, 451, 488
BmiI GGNNCC 5 cut(s) 151, 318, 319, 490, 540
BmrFI CCNGG 1 cut(s) 518
BmsI GCATC 3 cut(s) 215, 245, 701
BpiI GAAGAC 1 cut(s) 678
BplI GAGNNNNNCTC 2 cut(s) 486, 518
Bpu10I CCTNAGC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 518
BsaHI GRCGYC 2 cut(s) 213, 539
BsaI GGTCTC 2 cut(s) 387, 590
BsaJI CCNNGG 3 cut(s) 162, 365, 441
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 517
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 569
BseDI CCNNGG 3 cut(s) 162, 365, 441
BseGI GGATG 5 cut(s) 195, 206, 260, 699, 716
BseLI CCNNNNNNNGG 2 cut(s) 327, 517
BseMII CTCAG 3 cut(s) 138, 293, 572
BseNI ACTGG 1 cut(s) 569
BseRI GAGGAG 2 cut(s) 299, 458
BseX3I CGGCCG 1 cut(s) 438
BseXI GCAGC 4 cut(s) 215, 315, 370, 577
Bsh1236I CGCG 2 cut(s) 456, 486
Bsh1285I CGRYCG 3 cut(s) 60, 220, 441
BshFI GGCC 5 cut(s) 364, 380, 440, 452, 470
BshNI GGYRCC 2 cut(s) 149, 538
BsiEI CGRYCG 3 cut(s) 60, 220, 441
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 2 cut(s) 397, 411
BsiSI CCGG 4 cut(s) 39, 60, 147, 518
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 327, 517
BsmAI GTCTC 4 cut(s) 127, 387, 578, 590
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 5 cut(s) 364, 380, 440, 452, 470
Bso31I GGTCTC 2 cut(s) 387, 590
BsoBI CYCGRG 2 cut(s) 397, 411
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 20, 217
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 5 cut(s) 364, 380, 440, 452, 470
BspCNI CTCAG 3 cut(s) 137, 292, 571
BspFNI CGCG 2 cut(s) 456, 486
BspLI GGNNCC 5 cut(s) 151, 318, 319, 490, 540
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 2 cut(s) 185, 397
BspT107I GGYRCC 2 cut(s) 149, 538
BspTNI GGTCTC 2 cut(s) 387, 590
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 569
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 3 cut(s) 162, 365, 441
BssMI GATC 2 cut(s) 20, 217
BssNI GRCGYC 2 cut(s) 213, 539
BssSI CACGAG 1 cut(s) 98
BssT1I CCWWGG 2 cut(s) 162, 365
Bst2BI CACGAG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 690
Bst6I CTCTTC 2 cut(s) 185, 397
BstACI GRCGYC 2 cut(s) 213, 539
BstC8I GCNNGC 3 cut(s) 148, 454, 531
BstDEI CTNAG 3 cut(s) 124, 279, 558
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 5 cut(s) 195, 206, 260, 699, 716
BstFNI CGCG 2 cut(s) 456, 486
BstH2I RGCGCY 1 cut(s) 542
BstHHI GCGC 2 cut(s) 458, 541
BstKTI GATC 2 cut(s) 23, 220
BstMAI GTCTC 4 cut(s) 127, 387, 578, 590
BstMBI GATC 2 cut(s) 20, 217
BstMCI CGRYCG 3 cut(s) 60, 220, 441
BstMWI GCNNNNNNNGC 3 cut(s) 212, 446, 455
BstSCI CCNGG 1 cut(s) 516
BstSFI CTRYAG 1 cut(s) 343
BstUI CGCG 2 cut(s) 456, 486
BstV1I GCAGC 4 cut(s) 215, 315, 370, 577
BstV2I GAAGAC 1 cut(s) 678
BstXI CCANNNNNNTGG 2 cut(s) 163, 607
BstZI CGGCCG 1 cut(s) 438
BsuRI GGCC 5 cut(s) 364, 380, 440, 452, 470
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 127
BtsCI GGATG 5 cut(s) 195, 206, 260, 699, 716
Cac8I GCNNGC 3 cut(s) 148, 454, 531
CfoI GCGC 2 cut(s) 458, 541
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 4 cut(s) 317, 378, 451, 488
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 551
CviAII CATG 2 cut(s) 163, 715
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 3 cut(s) 124, 279, 558
DinI GGCGCC 1 cut(s) 540
DpnI GATC 2 cut(s) 22, 219
DpnII GATC 2 cut(s) 20, 217
EaeI YGGCCR 1 cut(s) 438
EagI CGGCCG 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 185, 397
EarI CTCTTC 2 cut(s) 185, 397
EciI GGCGGA 2 cut(s) 66, 77
EclXI CGGCCG 1 cut(s) 438
Eco130I CCWWGG 2 cut(s) 162, 365
Eco31I GGTCTC 2 cut(s) 387, 590
Eco47I GGWCC 2 cut(s) 317, 488
Eco52I CGGCCG 1 cut(s) 438
Eco88I CYCGRG 2 cut(s) 397, 411
EcoO109I RGGNCCY 1 cut(s) 317
EcoT14I CCWWGG 2 cut(s) 162, 365
EcoT22I ATGCAT 1 cut(s) 716
EgeI GGCGCC 1 cut(s) 540
EheI GGCGCC 1 cut(s) 540
ErhI CCWWGG 2 cut(s) 162, 365
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 2 cut(s) 166, 718
FaiI YATR 3 cut(s) 164, 716, 721
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FaqI GGGAC 1 cut(s) 330
FatI CATG 2 cut(s) 162, 714
FauI CCCGC 3 cut(s) 276, 461, 628
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 9 cut(s) 80, 204, 304, 359, 362, 381, 450, 471, 566
FokI GGATG 4 cut(s) 182, 193, 267, 706
Fsp4HI GCNGC 9 cut(s) 80, 204, 304, 359, 362, 381, 450, 471, 566
GlaI GCGC 2 cut(s) 457, 540
GluI GCNGC 9 cut(s) 80, 204, 304, 359, 362, 381, 450, 471, 566
HaeII RGCGCY 1 cut(s) 542
HaeIII GGCC 5 cut(s) 364, 380, 440, 452, 470
HapII CCGG 4 cut(s) 39, 60, 147, 518
HgaI GACGC 1 cut(s) 221
HhaI GCGC 2 cut(s) 458, 541
Hin1I GRCGYC 2 cut(s) 213, 539
Hin1II CATG 2 cut(s) 166, 718
Hin6I GCGC 2 cut(s) 456, 539
HinP1I GCGC 2 cut(s) 456, 539
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 1 cut(s) 629
HpaII CCGG 4 cut(s) 39, 60, 147, 518
HphI GGTGA 2 cut(s) 85, 343
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 211, 392, 561
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 195, 307
HpyCH4III ACNGT 1 cut(s) 690
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 4 cut(s) 4, 203, 258, 714
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 446, 455
HpyF3I CTNAG 3 cut(s) 124, 279, 558
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 2 cut(s) 213, 539
Hsp92II CATG 2 cut(s) 166, 718
HspAI GCGC 2 cut(s) 456, 539
KasI GGCGCC 1 cut(s) 538
KflI GGGWCCC 1 cut(s) 317
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 20, 217
LguI GCTCTTC 2 cut(s) 185, 397
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 4 cut(s) 215, 315, 370, 577
LweI GCATC 3 cut(s) 215, 245, 701
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 134, 233
MalI GATC 2 cut(s) 22, 219
MboI GATC 2 cut(s) 20, 217
MboII GAAGA 6 cut(s) 4, 172, 346, 349, 414, 683
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 3 cut(s) 259, 505, 663
Mly113I GGCGCC 1 cut(s) 539
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 9 cut(s) 84, 93, 101, 277, 321, 348, 436, 439, 567
Mph1103I ATGCAT 1 cut(s) 716
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 4 cut(s) 39, 60, 147, 518
MspR9I CCNGG 1 cut(s) 518
MvnI CGCG 2 cut(s) 456, 486
MwoI GCNNNNNNNGC 3 cut(s) 212, 446, 455
NaeI GCCGGC 1 cut(s) 148
NarI GGCGCC 1 cut(s) 539
NciI CCSGG 1 cut(s) 518
NcoI CCATGG 1 cut(s) 162
NdeII GATC 2 cut(s) 20, 217
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 166, 718
NlaIV GGNNCC 5 cut(s) 151, 318, 319, 490, 540
NmeAIII GCCGAG 3 cut(s) 402, 466, 607
NsiI ATGCAT 1 cut(s) 716
PciSI GCTCTTC 2 cut(s) 185, 397
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 516
PkrI GCNGC 9 cut(s) 81, 205, 305, 360, 363, 382, 451, 472, 567
Ple19I CGATCG 1 cut(s) 220
PluTI GGCGCC 1 cut(s) 542
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
PspN4I GGNNCC 5 cut(s) 151, 318, 319, 490, 540
PspPI GGNCC 4 cut(s) 317, 378, 451, 488
PspPPI RGGWCCY 1 cut(s) 317
PvuI CGATCG 1 cut(s) 220
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
RseI CAYNNNNRTG 1 cut(s) 161
SalI GTCGAC 1 cut(s) 55
SapI GCTCTTC 2 cut(s) 185, 397
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 9 cut(s) 80, 204, 304, 359, 362, 381, 450, 471, 566
Sau3AI GATC 2 cut(s) 20, 217
Sau96I GGNCC 4 cut(s) 317, 378, 451, 488
ScaI AGTACT 1 cut(s) 552
ScrFI CCNGG 1 cut(s) 518
SduI GDGCHC 1 cut(s) 46
SetI ASST 5 cut(s) 130, 141, 247, 280, 559
SfaNI GCATC 3 cut(s) 215, 245, 701
SfcI CTRYAG 1 cut(s) 343
SfoI GGCGCC 1 cut(s) 540
SinI GGWCC 2 cut(s) 317, 488
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 3 cut(s) 259, 505, 663
SspDI GGCGCC 1 cut(s) 538
SspI AATATT 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 516
StyI CCWWGG 2 cut(s) 162, 365
TaaI ACNGT 1 cut(s) 690
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 30, 56
TasI AATT 3 cut(s) 259, 505, 663
TatI WGTACW 1 cut(s) 550
TauI GCSGC 5 cut(s) 82, 364, 383, 452, 473
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseI GCWGC 4 cut(s) 203, 303, 358, 565
TspGWI ACGGA 3 cut(s) 122, 716, 723
VpaK11BI GGWCC 2 cut(s) 317, 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 552
Zsp2I ATGCAT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.