Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013810

Physical Location & Seq

Genomic Coordinates Reverse (-)

15010788 .. 15011616

Gene Structure 829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G125100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCGATCCTCCTACAAGCGACCCAAGCTCAACGACCCCCAGTCCATCCACCCGGCTGAGCCTCCGATGCCGCTGCCGCCTCGCCGCCTCACCCAAGACCAAGAGTTCACCGTCATCGTCTCCGCGCTTCGCAACGTCGTCGCTGGCACCGCCACCTCCGCCTCCATGGACTTCAATTCCCTCCTCCCCCCACTACAATGCGCCGCCACTTCCTACCAGGGCGCAACTGGCAGTAGCTGCTACAGCGACGCCCTATTGACACAGTCCGATTTGGACACCTGCAACGTGTGCAAAATTAAGGGCTGTCTAGGGTGCAATTTTTTCCCGCCACCAGCTCCGGAGGAAAAGGGAAACAATAACAAAAAGGGGCCCAAGAAGAGGGTGAAGAAGAACTACAGGGGAGTGAGGCAGAGGCCTTGGGGTAAATGGGCTGCGGAAATTCGAGACCCGAGACGGGCGACTCGGGTCTGGCTCGGCACATTCACGACGGCGGAGGAGGCTGCCCGGGCCTACGACAAGGCCGCGATCGAGTTCCGTGGACCCAGAGCAAAGCTCAATTTTCCATTTCCCGACACCACATTGTTGACCCAGGAAACCAATCCAGCACAGCCCGCACAGCCCCAGCCGGTAGTTACAGAGCAAGAGACAAGCAACGAATTTTCTCGGGAAATTGAAATGACGGAAATTGGGAAGGGAAAGGAAAAGGAAAAGGAATTCTGGGAAATGATTGGAGAAGACGAAATCCAACAGTGGATGAGGATGATGGATTTTGCCACTGATCATTCCTCGGATTCTGGAAATGCTCAAAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

272

Amino Acids

30.32

Weight (kDa)

8.16

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34410
fragaria_vesca	FvH4_2g06050 FvH4_2g06060
malus_domestica	MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica	Prupe.8G125100_v2.0.a1
pyrus_communis	pycom05g07360 pycom10g07840
rosa_chinensis	RchiOBHm_Chr6g0257181
rosa_laevigata	RLG00000014680
rosa_multiflora	Rmu_sc0001228.1_g000009
rosa_rugosa	Rorug05G0574400
rosa_samantha	Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana	Rw6G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	146
AccII	CGCG	2 cut(s)	125, 524
AccIII	TCCGGA	1 cut(s)	337
AcsI	RAATTY	3 cut(s)	438, 656, 713
AcyI	GRCGYC	1 cut(s)	249
AfeI	AGCGCT	1 cut(s)	811
AfiI	CCNNNNNNNGG	2 cut(s)	378, 454
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	175, 674
AhdI	GACNNNNNGTC	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	216, 588
AluBI	AGCT	4 cut(s)	28, 237, 335, 553
AluI	AGCT	4 cut(s)	28, 237, 335, 553
Alw26I	GTCTC	4 cut(s)	124, 438, 445, 638
AlwNI	CAGNNNCTG	1 cut(s)	237
Ama87I	CYCGRG	4 cut(s)	448, 462, 504, 663
Aor13HI	TCCGGA	1 cut(s)	337
Aor51HI	AGCGCT	1 cut(s)	811
AoxI	GGCC	4 cut(s)	368, 413, 507, 519
ApaI	GGGCCC	1 cut(s)	372
ApeKI	GCWGC	4 cut(s)	73, 237, 431, 500
ApoI	RAATTY	3 cut(s)	438, 656, 713
AspLEI	GCGC	4 cut(s)	127, 203, 224, 812
AspS9I	GGNCC	4 cut(s)	368, 369, 507, 539
AsuC2I	CCSGG	3 cut(s)	53, 505, 506
AsuHPI	GGTGA	3 cut(s)	82, 100, 394
AvaI	CYCGRG	4 cut(s)	448, 462, 504, 663
AvaII	GGWCC	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	372
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
BbsI	GAAGAC	1 cut(s)	741
BbvI	GCAGC	4 cut(s)	60, 224, 418, 487
BccI	CCATC	2 cut(s)	53, 757
BceAI	ACGGC	1 cut(s)	504
BcgI	CGANNNNNNTGC	4 cut(s)	55, 89, 121, 155
BciT130I	CCWGG	2 cut(s)	218, 590
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	3 cut(s)	53, 505, 506
BcoDI	GTCTC	4 cut(s)	124, 438, 445, 638
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	2 cut(s)	241, 394
BfoI	RGCGCY	1 cut(s)	813
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	9 cut(s)	71, 74, 77, 85, 204, 238, 432, 501, 522
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	9 cut(s)	72, 75, 78, 86, 205, 239, 433, 502, 523
Bme1390I	CCNGG	5 cut(s)	53, 218, 505, 506, 590
Bme18I	GGWCC	1 cut(s)	539
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmeT110I	CYCGRG	4 cut(s)	448, 462, 504, 663
BmgT120I	GGNCC	4 cut(s)	368, 369, 507, 539
BmiI	GGNNCC	4 cut(s)	148, 369, 370, 541
BmrFI	CCNGG	5 cut(s)	53, 218, 505, 506, 590
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	34
BoxI	GACNNNNGTC	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	741
BplI	GAGNNNNNCTC	2 cut(s)	537, 569
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuMI	CCSGG	3 cut(s)	53, 505, 506
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	7 cut(s)	165, 217, 416, 504, 535, 588, 786
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 454
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	2 cut(s)	40, 232
BseAI	TCCGGA	1 cut(s)	337
BseBI	CCWGG	2 cut(s)	218, 590
BseDI	CCNNGG	7 cut(s)	165, 217, 416, 504, 535, 588, 786
BseGI	GGATG	3 cut(s)	45, 759, 765
BseLI	CCNNNNNNNGG	2 cut(s)	378, 454
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	40, 232
BseRI	GAGGAG	2 cut(s)	173, 509
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	4 cut(s)	60, 224, 418, 487
BseYI	CCCAGC	1 cut(s)	621
Bsh1236I	CGCG	2 cut(s)	125, 524
Bsh1285I	CGRYCG	1 cut(s)	528
BshFI	GGCC	4 cut(s)	370, 415, 509, 521
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	528
BsiHKCI	CYCGRG	4 cut(s)	448, 462, 504, 663
BsiSI	CCGG	4 cut(s)	53, 338, 505, 626
BslI	CCNNNNNNNGG	2 cut(s)	378, 454
BsmAI	GTCTC	4 cut(s)	124, 438, 445, 638
BsmBI	CGTCTC	2 cut(s)	124, 445
BsnI	GGCC	4 cut(s)	370, 415, 509, 521
Bso31I	GGTCTC	1 cut(s)	438
BsoBI	CYCGRG	4 cut(s)	448, 462, 504, 663
Bsp120I	GGGCCC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp13I	TCCGGA	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	5, 525, 778
Bsp1720I	GCTNAGC	1 cut(s)	57
Bsp19I	CCATGG	1 cut(s)	165
BspANI	GGCC	4 cut(s)	370, 415, 509, 521
BspCNI	CTCAG	1 cut(s)	49
BspEI	TCCGGA	1 cut(s)	337
BspFNI	CGCG	2 cut(s)	125, 524
BspLI	GGNNCC	4 cut(s)	148, 369, 370, 541
BspMI	ACCTGC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	2 cut(s)	40, 232
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	7 cut(s)	165, 217, 416, 504, 535, 588, 786
BssMI	GATC	3 cut(s)	5, 525, 778
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	165, 416
Bst2UI	CCWGG	2 cut(s)	218, 590
Bst4CI	ACNGT	3 cut(s)	112, 264, 750
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	2 cut(s)	237, 288
BstC8I	GCNNGC	2 cut(s)	145, 612
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	2 cut(s)	165, 535
BstF5I	GGATG	3 cut(s)	45, 759, 765
BstFNI	CGCG	2 cut(s)	125, 524
BstH2I	RGCGCY	1 cut(s)	813
BstHHI	GCGC	4 cut(s)	127, 203, 224, 812
BstKTI	GATC	3 cut(s)	8, 528, 781
BstMAI	GTCTC	4 cut(s)	124, 438, 445, 638
BstMBI	GATC	3 cut(s)	5, 525, 778
BstMCI	CGRYCG	1 cut(s)	528
BstNI	CCWGG	2 cut(s)	218, 590
BstPAI	GACNNNNGTC	1 cut(s)	464
BstSCI	CCNGG	5 cut(s)	51, 216, 503, 504, 588
BstSFI	CTRYAG	2 cut(s)	241, 394
BstSLI	GKGCMC	1 cut(s)	372
BstUI	CGCG	2 cut(s)	125, 524
BstV1I	GCAGC	4 cut(s)	60, 224, 418, 487
BstV2I	GAAGAC	1 cut(s)	741
BsuRI	GGCC	4 cut(s)	370, 415, 509, 521
BtgI	CCRYGG	2 cut(s)	165, 535
BtsCI	GGATG	3 cut(s)	45, 759, 765
BtsIMutI	CAGTG	2 cut(s)	755, 774
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	2 cut(s)	145, 612
CaiI	CAGNNNCTG	1 cut(s)	237
CfoI	GCGC	4 cut(s)	127, 203, 224, 812
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	4 cut(s)	368, 369, 507, 539
Cfr9I	CCCGGG	1 cut(s)	504
CseI	GACGC	1 cut(s)	257
CviAII	CATG	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	3 cut(s)	7, 527, 780
DpnII	GATC	3 cut(s)	5, 525, 778
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	371
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	2 cut(s)	148, 506
Eco130I	CCWWGG	2 cut(s)	165, 416
Eco147I	AGGCCT	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	539
Eco47III	AGCGCT	1 cut(s)	811
Eco88I	CYCGRG	4 cut(s)	448, 462, 504, 663
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	713
EcoRII	CCWGG	2 cut(s)	216, 588
EcoT14I	CCWWGG	2 cut(s)	165, 416
EcoT38I	GRGCYC	1 cut(s)	372
ErhI	CCWWGG	2 cut(s)	165, 416
Esp3I	CGTCTC	2 cut(s)	124, 445
FaeI	CATG	1 cut(s)	169
FaiI	YATR	1 cut(s)	167
FatI	CATG	1 cut(s)	165
FauI	CCCGC	2 cut(s)	333, 619
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	9 cut(s)	71, 74, 77, 85, 204, 238, 432, 501, 522
FokI	GGATG	3 cut(s)	32, 766, 772
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	9 cut(s)	71, 74, 77, 85, 204, 238, 432, 501, 522
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	4 cut(s)	126, 202, 223, 811
GluI	GCNGC	9 cut(s)	71, 74, 77, 85, 204, 238, 432, 501, 522
GsaI	CCCAGC	1 cut(s)	625
HaeII	RGCGCY	1 cut(s)	813
HaeIII	GGCC	4 cut(s)	370, 415, 509, 521
HapII	CCGG	4 cut(s)	53, 338, 505, 626
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	4 cut(s)	127, 203, 224, 812
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	4 cut(s)	125, 201, 222, 810
HinP1I	GCGC	4 cut(s)	125, 201, 222, 810
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	2 cut(s)	460, 791
HpaII	CCGG	4 cut(s)	53, 338, 505, 626
HphI	GGTGA	3 cut(s)	82, 100, 394
Hpy166II	GTNNAC	3 cut(s)	108, 539, 585
Hpy188I	TCNGA	3 cut(s)	66, 268, 790
Hpy188III	TCNNGA	6 cut(s)	338, 443, 484, 569, 665, 795
Hpy8I	GTNNAC	3 cut(s)	108, 539, 585
Hpy99I	CGWCG	4 cut(s)	140, 143, 251, 490
HpyAV	CCTTC	1 cut(s)	685
HpyCH4III	ACNGT	3 cut(s)	112, 264, 750
HpyCH4IV	ACGT	2 cut(s)	135, 285
HpyCH4V	TGCA	3 cut(s)	282, 291, 315
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	2 cut(s)	135, 285
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	4 cut(s)	125, 201, 222, 810
Kpn2I	TCCGGA	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	3 cut(s)	5, 525, 778
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	4 cut(s)	60, 224, 418, 487
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	135, 285
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	3 cut(s)	7, 527, 780
MboI	GATC	3 cut(s)	5, 525, 778
MboII	GAAGA	4 cut(s)	388, 397, 400, 746
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	9 cut(s)	175, 294, 316, 438, 556, 656, 669, 684, 713
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	769
MroI	TCCGGA	1 cut(s)	337
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	196
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	4 cut(s)	53, 338, 505, 626
MspR9I	CCNGG	5 cut(s)	53, 218, 505, 506, 590
MvaI	CCWGG	2 cut(s)	218, 590
MvnI	CGCG	2 cut(s)	125, 524
NciI	CCSGG	3 cut(s)	53, 505, 506
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	5, 525, 778
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	4 cut(s)	148, 369, 370, 541
NmeAIII	GCCGAG	1 cut(s)	453
PaqCI	CACCTGC	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	791
PflFI	GACNNNGTC	1 cut(s)	262
PkrI	GCNGC	9 cut(s)	72, 75, 78, 86, 205, 239, 433, 502, 523
Ple19I	CGATCG	1 cut(s)	528
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PshAI	GACNNNNGTC	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	216, 588
PspFI	CCCAGC	1 cut(s)	621
PspGI	CCWGG	2 cut(s)	216, 588
PspN4I	GGNNCC	4 cut(s)	148, 369, 370, 541
PspOMI	GGGCCC	1 cut(s)	368
PspPI	GGNCC	4 cut(s)	368, 369, 507, 539
PstNI	CAGNNNCTG	1 cut(s)	237
PsyI	GACNNNGTC	1 cut(s)	262
PvuI	CGATCG	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	9 cut(s)	71, 74, 77, 85, 204, 238, 432, 501, 522
Sau3AI	GATC	3 cut(s)	5, 525, 778
Sau96I	GGNCC	4 cut(s)	368, 369, 507, 539
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	5 cut(s)	53, 218, 505, 506, 590
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	8 cut(s)	30, 138, 158, 239, 281, 288, 337, 555
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	2 cut(s)	241, 394
SinI	GGWCC	1 cut(s)	539
SmaI	CCCGGG	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	196
SrfI	GCCCGGGC	1 cut(s)	506
Sse9I	AATT	9 cut(s)	175, 294, 316, 438, 556, 656, 669, 684, 713
SseBI	AGGCCT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	415
StyD4I	CCNGG	5 cut(s)	51, 216, 503, 504, 588
StyI	CCWWGG	2 cut(s)	165, 416
TaaI	ACNGT	3 cut(s)	112, 264, 750
TaiI	ACGT	2 cut(s)	138, 288
TaqI	TCGA	2 cut(s)	442, 528
TasI	AATT	9 cut(s)	175, 294, 316, 438, 556, 656, 669, 684, 713
TauI	GCSGC	5 cut(s)	73, 79, 87, 206, 524
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	2 cut(s)	755, 781
TseI	GCWGC	4 cut(s)	73, 237, 431, 500
TspGWI	ACGGA	2 cut(s)	524, 695
TspMI	CCCGGG	1 cut(s)	504
TspRI	CASTG	2 cut(s)	755, 781
Tth111I	GACNNNGTC	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	3 cut(s)	438, 656, 713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmaI	CCCGGG	1 cut(s)	504
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.