MD10G1094700.v1.1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013810
Physical Location & Seq
Reverse (-)
14731546 .. 14732343
798 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1094700.v1.1.491

Sequence Viewer

Length: 798 bp
ATGCAACCTTCATACAAGCGATTCAAGCCCTCCGACTCCCAGCCAGCCCACTCGGCCCCTCCTCCGTTTCAGCCTTTGCCGCCGCTTCCCCGCCTCACCCAAGATCAAGAATACACGGTAATCGTCTCTGCGCTTCAAAACGTCGTCGCTGGAACCGCCACAGCCGCCTCCGTGGACTTGAATTCGCTCCTCCCCCCACTACAACGCGCTTCCACTTTCTCTCCCCGCTATACTACAAGTACTAGCTGCTCCAGCAACACTCTCTTGGTGCCGTCCGATTTGGACACCTGCCACGAGTGCAAAATCAAGGGGTGTCTCGGGTGTACTTTGTTCCCGCCAGCAGCCCAGGAGGAAAAGGGAAGTAGTAATAACAAAAAAGGGCCGAAGAAGAGGGTGAAGAAGAACTACAGGGGAGTGAGGCAGCGGCCTTGGGGTAAATGGGCTGCCGAGATTCGAGACCCGAGACGGGCGACTAGGGTCTGGCTAGGCACTTTCACTTCGGCTGAGGAGGCGGCCCGGGCTTACGATAAAGCTGCAATCGAGTTTCGGGGGCCAAGAGCGAAGCTCAATTTTCCGTTTCCGGACACAACATTGGTGACCCAAGAAAGTAATTCATCACAACCACAACAGCAACAAGTAGTTACAGAGCAAAGGAATAAAAATGTCGAATTTCCAGGGGAAGTTGAAACGACGGGGATTATGAAGGAAAATGAGTTACTGGAAGAGGACTTCCAACAGTGGATGATGATGCTGGATGCTACTGATAATTCTTCGGATTCAGGAAATGTTCATATATAG

Protein Analysis

266

Amino Acids

29.5

Weight (kDa)

8.55

Isoelectric Point (pI)

57.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 135 - 184 1.7e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34410
fragaria_vesca FvH4_2g06050 FvH4_2g06060
malus_domestica MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica Prupe.8G125100_v2.0.a1
pyrus_communis pycom05g07360 pycom10g07840
rosa_chinensis RchiOBHm_Chr6g0257181
rosa_laevigata RLG00000014680
rosa_multiflora Rmu_sc0001228.1_g000009
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana Rw6G007980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 268
AccII CGCG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 9 cut(s) 80, 83, 91, 156, 165, 226, 335, 424, 512
AcsI RAATTY 2 cut(s) 181, 668
AfaI GTAC 2 cut(s) 241, 325
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 4 cut(s) 25, 137, 181, 686
AjnI CCWGG 2 cut(s) 345, 673
AluBI AGCT 3 cut(s) 246, 533, 565
AluI AGCT 3 cut(s) 246, 533, 565
Alw26I GTCTC 4 cut(s) 130, 320, 450, 457
Ama87I CYCGRG 3 cut(s) 317, 460, 516
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 5 cut(s) 54, 380, 425, 513, 551
ApeKI GCWGC 5 cut(s) 246, 341, 421, 443, 533
ApoI RAATTY 2 cut(s) 181, 668
AspLEI GCGC 2 cut(s) 133, 209
AspS9I GGNCC 4 cut(s) 55, 380, 514, 551
AsuC2I CCSGG 2 cut(s) 517, 518
AsuHPI GGTGA 3 cut(s) 88, 406, 607
AvaI CYCGRG 3 cut(s) 317, 460, 516
BanI GGYRCC 1 cut(s) 268
BarI GAAGNNNNNNTAC 2 cut(s) 389, 421
BauI CACGAG 1 cut(s) 293
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 5 cut(s) 233, 353, 430, 433, 520
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciT130I CCWGG 2 cut(s) 347, 675
BcnI CCSGG 2 cut(s) 517, 518
BcoDI GTCTC 4 cut(s) 130, 320, 450, 457
BfaI CTAG 3 cut(s) 243, 474, 485
BfmI CTRYAG 1 cut(s) 406
BfuAI ACCTGC 1 cut(s) 296
BglI GCCNNNNNGGC 1 cut(s) 53
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 4 cut(s) 347, 517, 518, 675
BmeT110I CYCGRG 3 cut(s) 317, 460, 516
BmgT120I GGNCC 4 cut(s) 55, 380, 514, 551
BmiI GGNNCC 4 cut(s) 57, 154, 270, 552
BmrFI CCNGG 4 cut(s) 347, 517, 518, 675
BmsI GCATC 2 cut(s) 738, 745
BoxI GACNNNNGTC 1 cut(s) 476
BplI GAGNNNNNCTC 2 cut(s) 549, 581
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 504
BpuMI CCSGG 2 cut(s) 517, 518
BsaI GGTCTC 1 cut(s) 450
BsaJI CCNNGG 5 cut(s) 171, 345, 428, 516, 674
BsaWI WCCGGW 1 cut(s) 580
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 1 cut(s) 723
BseAI TCCGGA 1 cut(s) 580
BseBI CCWGG 2 cut(s) 347, 675
BseDI CCNNGG 5 cut(s) 171, 345, 428, 516, 674
BseGI GGATG 2 cut(s) 747, 760
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 723
BseRI GAGGAG 3 cut(s) 51, 179, 521
BseXI GCAGC 5 cut(s) 233, 353, 430, 433, 520
BseYI CCCAGC 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 5 cut(s) 56, 382, 427, 515, 553
BshNI GGYRCC 1 cut(s) 268
BsiHKCI CYCGRG 3 cut(s) 317, 460, 516
BsiSI CCGG 2 cut(s) 517, 581
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 4 cut(s) 130, 320, 450, 457
BsmBI CGTCTC 2 cut(s) 130, 457
BsnI GGCC 5 cut(s) 56, 382, 427, 515, 553
Bso31I GGTCTC 1 cut(s) 450
BsoBI CYCGRG 3 cut(s) 317, 460, 516
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 9 cut(s) 80, 83, 91, 156, 165, 226, 335, 424, 512
BspANI GGCC 5 cut(s) 56, 382, 427, 515, 553
BspCNI CTCAG 1 cut(s) 496
BspEI TCCGGA 1 cut(s) 580
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 4 cut(s) 57, 154, 270, 552
BspMI ACCTGC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 450
BsrI ACTGG 1 cut(s) 723
BssECI CCNNGG 5 cut(s) 171, 345, 428, 516, 674
BssMI GATC 1 cut(s) 103
BssSI CACGAG 1 cut(s) 293
BssT1I CCWWGG 1 cut(s) 428
Bst2BI CACGAG 1 cut(s) 293
Bst2UI CCWGG 2 cut(s) 347, 675
Bst4CI ACNGT 2 cut(s) 118, 738
Bst6I CTCTTC 2 cut(s) 383, 717
BstC8I GCNNGC 2 cut(s) 45, 339
BstDEI CTNAG 1 cut(s) 504
BstDSI CCRYGG 1 cut(s) 171
BstEII GGTNACC 1 cut(s) 595
BstF5I GGATG 2 cut(s) 747, 760
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 2 cut(s) 133, 209
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 4 cut(s) 130, 320, 450, 457
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 9 cut(s) 25, 53, 79, 155, 164, 252, 297, 509, 518
BstNI CCWGG 2 cut(s) 347, 675
BstPAI GACNNNNGTC 1 cut(s) 476
BstPI GGTNACC 1 cut(s) 595
BstSCI CCNGG 4 cut(s) 345, 515, 516, 673
BstSFI CTRYAG 1 cut(s) 406
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 5 cut(s) 233, 353, 430, 433, 520
BsuRI GGCC 5 cut(s) 56, 382, 427, 515, 553
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 2 cut(s) 747, 760
BtsIMutI CAGTG 1 cut(s) 743
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 45, 339
CfoI GCGC 2 cut(s) 133, 209
Cfr13I GGNCC 4 cut(s) 55, 380, 514, 551
Cfr9I CCCGGG 1 cut(s) 516
Csp6I GTAC 2 cut(s) 240, 324
CviQI GTAC 2 cut(s) 240, 324
DdeI CTNAG 1 cut(s) 504
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 383, 717
EarI CTCTTC 2 cut(s) 383, 717
Eco130I CCWWGG 1 cut(s) 428
Eco31I GGTCTC 1 cut(s) 450
Eco88I CYCGRG 3 cut(s) 317, 460, 516
Eco91I GGTNACC 1 cut(s) 595
EcoO65I GGTNACC 1 cut(s) 595
EcoRI GAATTC 1 cut(s) 181
EcoRII CCWGG 2 cut(s) 345, 673
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
Esp3I CGTCTC 2 cut(s) 130, 457
FaiI YATR 6 cut(s) 13, 231, 701, 792, 794, 796
FauI CCCGC 3 cut(s) 98, 233, 342
FokI GGATG 2 cut(s) 754, 767
FspBI CTAG 3 cut(s) 243, 474, 485
GlaI GCGC 2 cut(s) 132, 208
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 5 cut(s) 56, 382, 427, 515, 553
HapII CCGG 2 cut(s) 517, 581
HhaI GCGC 2 cut(s) 133, 209
Hin6I GCGC 2 cut(s) 131, 207
HinP1I GCGC 2 cut(s) 131, 207
HinfI GANTC 4 cut(s) 21, 35, 451, 776
HpaII CCGG 2 cut(s) 517, 581
HphI GGTGA 3 cut(s) 88, 406, 607
Hpy166II GTNNAC 2 cut(s) 175, 324
Hpy188I TCNGA 3 cut(s) 34, 277, 775
Hpy188III TCNNGA 4 cut(s) 107, 455, 581, 780
Hpy8I GTNNAC 2 cut(s) 175, 324
Hpy99I CGWCG 3 cut(s) 146, 149, 694
HpyAV CCTTC 2 cut(s) 18, 697
HpyCH4III ACNGT 2 cut(s) 118, 738
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 4, 300, 536
HpyF10VI GCNNNNNNNGC 9 cut(s) 25, 53, 79, 155, 164, 252, 297, 509, 518
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 1 cut(s) 141
HspAI GCGC 2 cut(s) 131, 207
Kpn2I TCCGGA 1 cut(s) 580
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 192, 254
Lsp1109I GCAGC 5 cut(s) 233, 353, 430, 433, 520
LweI GCATC 2 cut(s) 738, 745
MaeI CTAG 3 cut(s) 243, 474, 485
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 3 cut(s) 595, 640, 714
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 6 cut(s) 397, 400, 409, 412, 734, 762
MluCI AATT 5 cut(s) 181, 568, 610, 668, 766
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 57, 757
MroI TCCGGA 1 cut(s) 580
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 2 cut(s) 517, 581
MspR9I CCNGG 4 cut(s) 347, 517, 518, 675
MvaI CCWGG 2 cut(s) 347, 675
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 9 cut(s) 25, 53, 79, 155, 164, 252, 297, 509, 518
NciI CCSGG 2 cut(s) 517, 518
NdeII GATC 1 cut(s) 103
NlaIV GGNNCC 4 cut(s) 57, 154, 270, 552
NmeAIII GCCGAG 2 cut(s) 32, 472
NmuCI GTSAC 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 296
PfeI GAWTC 3 cut(s) 21, 451, 776
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PshAI GACNNNNGTC 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 345, 673
PspEI GGTNACC 1 cut(s) 595
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 2 cut(s) 345, 673
PspN4I GGNNCC 4 cut(s) 57, 154, 270, 552
PspPI GGNCC 4 cut(s) 55, 380, 514, 551
RsaI GTAC 2 cut(s) 241, 325
RsaNI GTAC 2 cut(s) 240, 324
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 4 cut(s) 55, 380, 514, 551
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 4 cut(s) 347, 517, 518, 675
SetI ASST 6 cut(s) 10, 144, 248, 290, 535, 567
SfaNI GCATC 2 cut(s) 738, 745
SfcI CTRYAG 1 cut(s) 406
SmaI CCCGGG 1 cut(s) 518
SrfI GCCCGGGC 1 cut(s) 518
Sse9I AATT 5 cut(s) 181, 568, 610, 668, 766
SsiI CCGC 9 cut(s) 80, 83, 91, 156, 165, 226, 335, 424, 512
SspMI CTAG 3 cut(s) 243, 474, 485
StyD4I CCNGG 4 cut(s) 345, 515, 516, 673
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 2 cut(s) 118, 738
TaiI ACGT 1 cut(s) 144
TaqI TCGA 3 cut(s) 454, 540, 666
TasI AATT 5 cut(s) 181, 568, 610, 668, 766
TatI WGTACW 2 cut(s) 239, 323
TauI GCSGC 5 cut(s) 82, 85, 167, 427, 515
TfiI GAWTC 3 cut(s) 21, 451, 776
TscAI CASTG 1 cut(s) 743
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 5 cut(s) 246, 341, 421, 443, 533
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 3 cut(s) 603, 716, 779
TspGWI ACGGA 3 cut(s) 54, 160, 564
TspMI CCCGGG 1 cut(s) 516
TspRI CASTG 1 cut(s) 743
XapI RAATTY 2 cut(s) 181, 668
XmaI CCCGGG 1 cut(s) 516
XspI CTAG 3 cut(s) 243, 474, 485
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.