RLG00000014680

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013810
Physical Location & Seq
Reverse (-)
56206899 .. 56207781
883 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014680

Sequence Viewer

Length: 849 bp
ATGCAAAACTCCTTCAATCGATCCAAACTCGACACCGCCGGAGATCCACAACAGTTGACCCAAAACCCACTTCCTCCTCCGCCGCCTCGCCGCCTCACCCAAGAGCAAGAACTCTCCGTAATAGTCTCCGCTCTTCGAAACGTCGTTGCCGGCACCACCACCACCACCACCACCATGGACTTCAACTCTTTCTTCCCTTCCTACCATTACCCAGCCGCCGCTTCCACCTCCTCCTCTCCAGCCCTATTCGAAGCGTCTGATGCCGAGACGTGTCCTGTTTGTAAAATTCAAGGCTGCCTTGGATGCAATTTTTTCCCGCCAGCACAGGAGGAGAACAGCAACAGCAACAGCAACAGCAAGAAGAAGGCACCCAAGAAGAGGCTGAAGAAGAACTACAGGGGAGTGAGGCAGCGGCCTTGGGGCAAATGGGCAGCCGAAATCCGAGACCCGAGGAGGGCCACTCGGGTCTGGCTCGGCACGTTCCACACTGCCGAGGAGGCAGCCCGTGCCTACGACAAGGCCGCCATTGAGTTTCGCGGTCCCAGAGCGAAACTCAATTTCCCGTTTCCGGATAACTCATTGTCGATGAACCAAGAAACTTCGACGCCGCCCACACAGCCCATTCAAGAGCCCCAGAAGCAGCAGATAGTTGTTACAGATACTAAGCAAGAGAACAAGTGCGAGGATTCAAATGAAATGGAATGTGAGTTCTGGGAAAGGATCGGGGACGACGAGCTCTTTCAACAGTGGATGATGACGATGGACTACGCACCTGATCATTCGTCGGATTCTGGGAATGGGTCTGCCGGAAATGCTCACAGCAGAAAAAATAATCAGCTCGTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

283

Amino Acids

31.67

Weight (kDa)

6.91

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 131 - 180 3.6e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34410
fragaria_vesca FvH4_2g06050 FvH4_2g06060
malus_domestica MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica Prupe.8G125100_v2.0.a1
pyrus_communis pycom05g07360 pycom10g07840
rosa_chinensis RchiOBHm_Chr6g0257181
rosa_laevigata RLG00000014680
rosa_multiflora Rmu_sc0001228.1_g000009
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana Rw6G007980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 152, 367
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 1 cut(s) 537
AccIII TCCGGA 1 cut(s) 568
AclWI GGATC 3 cut(s) 15, 38, 728
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 605
AfiI CCNNNNNNNGG 3 cut(s) 378, 454, 568
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 6 cut(s) 16, 184, 290, 626, 690, 743
AjiI CACGTC 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AloI GAACNNNNNNTCC 2 cut(s) 692, 724
AluBI AGCT 2 cut(s) 736, 838
AluI AGCT 2 cut(s) 736, 838
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 3 cut(s) 130, 260, 438
AlwI GGATC 3 cut(s) 15, 38, 728
Ama87I CYCGRG 2 cut(s) 448, 462
Aor13HI TCCGGA 1 cut(s) 568
AoxI GGCC 3 cut(s) 413, 456, 519
ApeKI GCWGC 5 cut(s) 294, 409, 431, 500, 640
ApoI RAATTY 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 456, 539
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 2 cut(s) 136, 249
AvaI CYCGRG 2 cut(s) 448, 462
AvaII GGWCC 1 cut(s) 539
BanI GGYRCC 2 cut(s) 152, 367
BanII GRGCYC 2 cut(s) 633, 738
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 5 cut(s) 281, 421, 443, 512, 652
BccI CCATC 1 cut(s) 754
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 3 cut(s) 130, 260, 438
BfmI CTRYAG 1 cut(s) 394
BglI GCCNNNNNGGC 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 539
BmeT110I CYCGRG 2 cut(s) 448, 462
BmgBI CACGTC 1 cut(s) 270
BmgT120I GGNCC 2 cut(s) 456, 539
BmiI GGNNCC 3 cut(s) 154, 369, 541
BmsI GCATC 2 cut(s) 250, 293
BplI GAGNNNNNCTC 4 cut(s) 445, 477, 537, 569
BpmI CTGGAG 1 cut(s) 222
Bpu14I TTCGAA 2 cut(s) 136, 249
Bsa29I ATCGAT 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 5 cut(s) 174, 298, 416, 449, 492
BsaWI WCCGGW 1 cut(s) 568
Bsc4I CCNNNNNNNGG 3 cut(s) 378, 454, 568
Bse118I RCCGGY 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 568
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 5 cut(s) 174, 298, 416, 449, 492
BseGI GGATG 2 cut(s) 308, 756
BseLI CCNNNNNNNGG 3 cut(s) 378, 454, 568
BseRI GAGGAG 6 cut(s) 66, 220, 223, 344, 466, 509
BseXI GCAGC 5 cut(s) 281, 421, 443, 512, 652
BseYI CCCAGC 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 537
BshFI GGCC 3 cut(s) 415, 458, 521
BshNI GGYRCC 2 cut(s) 152, 367
BshVI ATCGAT 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 2 cut(s) 448, 462
BsiSI CCGG 4 cut(s) 39, 150, 569, 807
BslFI GGGAC 2 cut(s) 525, 740
BslI CCNNNNNNNGG 3 cut(s) 378, 454, 568
BsmAI GTCTC 3 cut(s) 130, 260, 438
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 525, 740
BsnI GGCC 3 cut(s) 415, 458, 521
Bso31I GGTCTC 1 cut(s) 438
BsoBI CYCGRG 2 cut(s) 448, 462
Bsp119I TTCGAA 2 cut(s) 136, 249
Bsp1286I GDGCHC 2 cut(s) 633, 738
Bsp13I TCCGGA 1 cut(s) 568
Bsp143I GATC 4 cut(s) 20, 43, 720, 775
Bsp19I CCATGG 1 cut(s) 174
BspANI GGCC 3 cut(s) 415, 458, 521
BspDI ATCGAT 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 568
BspFNI CGCG 1 cut(s) 537
BspLI GGNNCC 3 cut(s) 154, 369, 541
BspPI GGATC 3 cut(s) 15, 38, 728
BspQI GCTCTTC 1 cut(s) 138
BspT104I TTCGAA 2 cut(s) 136, 249
BspT107I GGYRCC 2 cut(s) 152, 367
BspTNI GGTCTC 1 cut(s) 438
BsrBI CCGCTC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 5 cut(s) 174, 298, 416, 449, 492
BssMI GATC 4 cut(s) 20, 43, 720, 775
BssNI GRCGYC 1 cut(s) 605
BssT1I CCWWGG 3 cut(s) 174, 298, 416
Bst4CI ACNGT 2 cut(s) 54, 747
Bst6I CTCTTC 2 cut(s) 138, 371
BstACI GRCGYC 1 cut(s) 605
BstAPI GCANNNNNTGC 1 cut(s) 506
BstBI TTCGAA 2 cut(s) 136, 249
BstC8I GCNNGC 2 cut(s) 151, 321
BstDEI CTNAG 1 cut(s) 663
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 308, 756
BstFNI CGCG 1 cut(s) 537
BstKTI GATC 4 cut(s) 23, 46, 723, 778
BstMAI GTCTC 3 cut(s) 130, 260, 438
BstMBI GATC 4 cut(s) 20, 43, 720, 775
BstMWI GCNNNNNNNGC 7 cut(s) 260, 303, 497, 506, 616, 637, 812
BstSFI CTRYAG 1 cut(s) 394
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 5 cut(s) 281, 421, 443, 512, 652
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 3 cut(s) 415, 458, 521
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 308, 756
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 2 cut(s) 486, 752
Cac8I GCNNGC 2 cut(s) 151, 321
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 456, 539
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 2 cut(s) 243, 613
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 175
DdeI CTNAG 1 cut(s) 663
DpnI GATC 4 cut(s) 22, 45, 722, 777
DpnII GATC 4 cut(s) 20, 43, 720, 775
Eam1104I CTCTTC 2 cut(s) 138, 371
EarI CTCTTC 2 cut(s) 138, 371
EciI GGCGGA 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 736
Eco130I CCWWGG 3 cut(s) 174, 298, 416
Eco24I GRGCYC 2 cut(s) 633, 738
Eco31I GGTCTC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 539
Eco53kI GAGCTC 1 cut(s) 736
Eco57I CTGAAG 1 cut(s) 404
Eco88I CYCGRG 2 cut(s) 448, 462
EcoICRI GAGCTC 1 cut(s) 736
EcoT14I CCWWGG 3 cut(s) 174, 298, 416
EcoT38I GRGCYC 2 cut(s) 633, 738
ErhI CCWWGG 3 cut(s) 174, 298, 416
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 1 cut(s) 178
FaiI YATR 1 cut(s) 176
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 2 cut(s) 525, 740
FatI CATG 1 cut(s) 174
FauI CCCGC 1 cut(s) 324
FbaI TGATCA 1 cut(s) 775
FokI GGATG 2 cut(s) 315, 763
FriOI GRGCYC 2 cut(s) 633, 738
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 3 cut(s) 415, 458, 521
HapII CCGG 4 cut(s) 39, 150, 569, 807
HgaI GACGC 2 cut(s) 243, 613
Hin1I GRCGYC 1 cut(s) 605
Hin1II CATG 1 cut(s) 178
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 686, 788
HpaII CCGG 4 cut(s) 39, 150, 569, 807
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 259, 443, 787
Hpy188III TCNNGA 2 cut(s) 569, 626
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 4 cut(s) 146, 607, 734, 787
HpyAV CCTTC 3 cut(s) 22, 207, 358
HpyCH4III ACNGT 2 cut(s) 54, 747
HpyCH4IV ACGT 3 cut(s) 141, 269, 479
HpyCH4V TGCA 2 cut(s) 4, 306
HpyF10VI GCNNNNNNNGC 7 cut(s) 260, 303, 497, 506, 616, 637, 812
HpyF3I CTNAG 1 cut(s) 663
HpySE526I ACGT 3 cut(s) 141, 269, 479
Hsp92I GRCGYC 1 cut(s) 605
Hsp92II CATG 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 568
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 4 cut(s) 20, 43, 720, 775
LguI GCTCTTC 1 cut(s) 138
Lsp1109I GCAGC 5 cut(s) 281, 421, 443, 512, 652
LweI GCATC 2 cut(s) 250, 293
MaeII ACGT 3 cut(s) 141, 269, 479
MaeIII GTNAC 1 cut(s) 652
MalI GATC 4 cut(s) 22, 45, 722, 777
MbiI CCGCTC 1 cut(s) 131
MboI GATC 4 cut(s) 20, 43, 720, 775
MboII GAAGA 6 cut(s) 125, 184, 373, 388, 397, 400
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 633, 738
MluCI AATT 4 cut(s) 285, 307, 556, 844
MmeI TCCRAC 1 cut(s) 765
MroI TCCGGA 1 cut(s) 568
MroNI GCCGGC 1 cut(s) 149
MseI TTAA 1 cut(s) 843
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 4 cut(s) 39, 150, 569, 807
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 7 cut(s) 260, 303, 497, 506, 616, 637, 812
NaeI GCCGGC 1 cut(s) 151
NcoI CCATGG 1 cut(s) 174
NdeII GATC 4 cut(s) 20, 43, 720, 775
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 3 cut(s) 154, 369, 541
NmeAIII GCCGAG 3 cut(s) 289, 453, 517
NspV TTCGAA 2 cut(s) 136, 249
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 729
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 686, 788
Psp124BI GAGCTC 1 cut(s) 738
PspFI CCCAGC 1 cut(s) 211
PspN4I GGNNCC 3 cut(s) 154, 369, 541
PspPI GGNCC 2 cut(s) 456, 539
PsuI RGATCY 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 738
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 843
Sau3AI GATC 4 cut(s) 20, 43, 720, 775
Sau96I GGNCC 2 cut(s) 456, 539
SduI GDGCHC 2 cut(s) 633, 738
SetI ASST 7 cut(s) 144, 230, 272, 482, 738, 775, 840
SfaNI GCATC 2 cut(s) 250, 293
SfcI CTRYAG 1 cut(s) 394
SfuI TTCGAA 2 cut(s) 136, 249
SinI GGWCC 1 cut(s) 539
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 4 cut(s) 285, 307, 556, 844
SstI GAGCTC 1 cut(s) 738
StyI CCWWGG 3 cut(s) 174, 298, 416
TaaI ACNGT 2 cut(s) 54, 747
TaiI ACGT 3 cut(s) 144, 272, 482
TaqI TCGA 6 cut(s) 19, 30, 136, 249, 584, 602
TasI AATT 4 cut(s) 285, 307, 556, 844
TauI GCSGC 7 cut(s) 85, 93, 218, 221, 415, 524, 610
TfiI GAWTC 2 cut(s) 686, 788
Tru1I TTAA 1 cut(s) 843
Tru9I TTAA 1 cut(s) 843
TscAI CASTG 2 cut(s) 493, 752
TseI GCWGC 5 cut(s) 294, 409, 431, 500, 640
TspDTI ATGAA 2 cut(s) 602, 708
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 2 cut(s) 493, 752
VpaK11BI GGWCC 1 cut(s) 539
XapI RAATTY 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.