Rh6BG083100

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013810
Physical Location & Seq
Forward (+)
13023978 .. 13025332
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG083100.1

Sequence Viewer

Length: 810 bp
ATGCAAAACTCCTTCAATCGATCCAAACTAGACAGCGCCGGAGATCCACAACAGTTGACCCAAAACCCACTTCCTCCTCCGCCGCCTTGCCGCCTCACCCAAGAGCAAGAACTCGCCGTAATCGTCTCCGCTCTACGAAACGTCGTTGCCGGCACCACCACCACCATGGACTTCAACTCTCTCTTCCCTTCCTACCATTACCCGGCCGCCACTTCCTCCTCCTCCTCTCCCGCCCTATTCGAAGCGTCTGATGCCGAGACGTGTCCGGTTTGTAAAATTCAAGGCTGCCTTGGATGCAATTTTTTCCCGCCAGCACAGGAGGAGAACAGCAACAACAACAACAAGAAGGCACCCAAGAAGAGGCTGAAGAAGAACTACAGGGGAGTGAGGCAGCGGCCTTGGGGCAAATGGGCCGCCGAAATCCGAGACCCGAGGAGGGCCACTCGGGTCTGGCTCGGCACGTTCCACACTGCCGAGGAGGCGGCCCGTGCATATGACAAGGCTGCCATTGAGTTTCGCGGTCCCAGAGCGAAACTCAATTTCCCGTTTCCGGATAACTCATTGTCGATGAACCAAGAAACTTCGACGCCGCCCACACAGCCCATTCAAGAACCCCAGAAGCAGCAGATAGTTGTTACAGATACTAAGCAAGAGAACAAGAGCGAGGATTCAAATGAAATGGAATGCGAGTTCTGGGAAAGGATCGGGGAAGACGAGCTGTTTCAACAGTGGATGATGACGATGGACTACGCACCTGATCATTCGTCGGATTCTGGGAATGGGTCTGCCGGAAATGCTCACAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

269

Amino Acids

30.18

Weight (kDa)

5.69

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 125 - 174 3.4e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34410
fragaria_vesca FvH4_2g06050 FvH4_2g06060
malus_domestica MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica Prupe.8G125100_v2.0.a1
pyrus_communis pycom05g07360 pycom10g07840
rosa_chinensis RchiOBHm_Chr6g0257181
rosa_laevigata RLG00000014680
rosa_multiflora Rmu_sc0001228.1_g000009
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana Rw6G007980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 152, 349
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 1 cut(s) 519
AccIII TCCGGA 1 cut(s) 550
AclWI GGATC 3 cut(s) 15, 38, 710
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 587
AfiI CCNNNNNNNGG 4 cut(s) 202, 360, 436, 550
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 6 cut(s) 16, 175, 281, 608, 672, 725
AjiI CACGTC 1 cut(s) 261
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AloI GAACNNNNNNTCC 2 cut(s) 674, 706
AluBI AGCT 1 cut(s) 718
AluI AGCT 1 cut(s) 718
Alw26I GTCTC 3 cut(s) 130, 251, 420
AlwI GGATC 3 cut(s) 15, 38, 710
Ama87I CYCGRG 2 cut(s) 430, 444
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 5 cut(s) 204, 395, 411, 438, 483
ApeKI GCWGC 4 cut(s) 285, 391, 503, 622
ApoI RAATTY 1 cut(s) 276
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 4 cut(s) 411, 438, 484, 521
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 240
AvaI CYCGRG 2 cut(s) 430, 444
AvaII GGWCC 1 cut(s) 521
BanI GGYRCC 2 cut(s) 152, 349
BarI GAAGNNNNNNTAC 2 cut(s) 359, 391
BbsI GAAGAC 1 cut(s) 717
BbvI GCAGC 4 cut(s) 272, 403, 490, 634
BccI CCATC 1 cut(s) 736
BceAI ACGGC 1 cut(s) 101
BclI TGATCA 1 cut(s) 757
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 3 cut(s) 130, 251, 420
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 376
BfoI RGCGCY 1 cut(s) 39
BglI GCCNNNNNGGC 1 cut(s) 479
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 521
BmeT110I CYCGRG 2 cut(s) 430, 444
BmgBI CACGTC 1 cut(s) 261
BmgT120I GGNCC 4 cut(s) 411, 438, 484, 521
BmiI GGNNCC 3 cut(s) 154, 351, 523
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 241, 284
BpiI GAAGAC 1 cut(s) 717
BplI GAGNNNNNCTC 4 cut(s) 427, 459, 519, 551
Bpu14I TTCGAA 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 587
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 5 cut(s) 165, 289, 398, 431, 474
BsaWI WCCGGW 2 cut(s) 265, 550
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 360, 436, 550
Bse118I RCCGGY 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 550
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 5 cut(s) 165, 289, 398, 431, 474
BseGI GGATG 2 cut(s) 299, 738
BseLI CCNNNNNNNGG 4 cut(s) 202, 360, 436, 550
BseRI GAGGAG 7 cut(s) 66, 208, 211, 214, 335, 448, 491
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 4 cut(s) 272, 403, 490, 634
Bsh1236I CGCG 1 cut(s) 519
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 5 cut(s) 206, 397, 413, 440, 485
BshNI GGYRCC 2 cut(s) 152, 349
BshVI ATCGAT 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 207
BsiHKCI CYCGRG 2 cut(s) 430, 444
BsiSI CCGG 6 cut(s) 39, 150, 203, 266, 551, 789
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 4 cut(s) 202, 360, 436, 550
BsmAI GTCTC 3 cut(s) 130, 251, 420
BsmBI CGTCTC 2 cut(s) 130, 251
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 1 cut(s) 689
BsnI GGCC 5 cut(s) 206, 397, 413, 440, 485
Bso31I GGTCTC 1 cut(s) 420
BsoBI CYCGRG 2 cut(s) 430, 444
Bsp119I TTCGAA 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 550
Bsp143I GATC 4 cut(s) 20, 43, 702, 757
Bsp19I CCATGG 1 cut(s) 165
BspANI GGCC 5 cut(s) 206, 397, 413, 440, 485
BspDI ATCGAT 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 550
BspFNI CGCG 1 cut(s) 519
BspLI GGNNCC 3 cut(s) 154, 351, 523
BspPI GGATC 3 cut(s) 15, 38, 710
BspT104I TTCGAA 1 cut(s) 240
BspT107I GGYRCC 2 cut(s) 152, 349
BspTNI GGTCTC 1 cut(s) 420
BsrBI CCGCTC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 5 cut(s) 165, 289, 398, 431, 474
BssMI GATC 4 cut(s) 20, 43, 702, 757
BssNI GRCGYC 1 cut(s) 587
BssT1I CCWWGG 3 cut(s) 165, 289, 398
Bst4CI ACNGT 3 cut(s) 54, 729, 803
Bst6I CTCTTC 2 cut(s) 188, 353
BstACI GRCGYC 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 151, 312
BstDEI CTNAG 1 cut(s) 645
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 299, 738
BstFNI CGCG 1 cut(s) 519
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 4 cut(s) 23, 46, 705, 760
BstMAI GTCTC 3 cut(s) 130, 251, 420
BstMBI GATC 4 cut(s) 20, 43, 702, 757
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 6 cut(s) 251, 294, 479, 488, 598, 794
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 376
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 4 cut(s) 272, 403, 490, 634
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 5 cut(s) 206, 397, 413, 440, 485
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 261
BtsCI GGATG 2 cut(s) 299, 738
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 2 cut(s) 468, 734
Cac8I GCNNGC 2 cut(s) 151, 312
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 4 cut(s) 411, 438, 484, 521
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 2 cut(s) 234, 595
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 166
DdeI CTNAG 1 cut(s) 645
DpnI GATC 4 cut(s) 22, 45, 704, 759
DpnII GATC 4 cut(s) 20, 43, 702, 757
EaeI YGGCCR 1 cut(s) 204
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 188, 353
EarI CTCTTC 2 cut(s) 188, 353
EciI GGCGGA 1 cut(s) 69
EclXI CGGCCG 1 cut(s) 204
Eco130I CCWWGG 3 cut(s) 165, 289, 398
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 521
Eco52I CGGCCG 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 386
Eco88I CYCGRG 2 cut(s) 430, 444
EcoT14I CCWWGG 3 cut(s) 165, 289, 398
ErhI CCWWGG 3 cut(s) 165, 289, 398
Esp3I CGTCTC 2 cut(s) 130, 251
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 167, 493, 495
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 507
FatI CATG 1 cut(s) 165
FauI CCCGC 2 cut(s) 238, 315
FauNDI CATATG 1 cut(s) 493
FbaI TGATCA 1 cut(s) 757
FokI GGATG 2 cut(s) 306, 745
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 5 cut(s) 206, 397, 413, 440, 485
HapII CCGG 6 cut(s) 39, 150, 203, 266, 551, 789
HgaI GACGC 2 cut(s) 234, 595
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 668, 770
HpaII CCGG 6 cut(s) 39, 150, 203, 266, 551, 789
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 250, 425, 769
Hpy188III TCNNGA 2 cut(s) 551, 608
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 3 cut(s) 146, 589, 769
HpyAV CCTTC 3 cut(s) 22, 198, 340
HpyCH4III ACNGT 3 cut(s) 54, 729, 803
HpyCH4IV ACGT 3 cut(s) 141, 260, 461
HpyCH4V TGCA 3 cut(s) 4, 297, 491
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 294, 479, 488, 598, 794
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 3 cut(s) 141, 260, 461
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 36
Kpn2I TCCGGA 1 cut(s) 550
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 757
Kzo9I GATC 4 cut(s) 20, 43, 702, 757
Lsp1109I GCAGC 4 cut(s) 272, 403, 490, 634
LweI GCATC 2 cut(s) 241, 284
MaeI CTAG 1 cut(s) 29
MaeII ACGT 3 cut(s) 141, 260, 461
MaeIII GTNAC 1 cut(s) 634
MalI GATC 4 cut(s) 22, 45, 704, 759
MbiI CCGCTC 1 cut(s) 131
MboI GATC 4 cut(s) 20, 43, 702, 757
MboII GAAGA 5 cut(s) 175, 370, 379, 382, 722
MflI RGATCY 1 cut(s) 43
MluCI AATT 3 cut(s) 276, 298, 538
MmeI TCCRAC 1 cut(s) 747
MroI TCCGGA 1 cut(s) 550
MroNI GCCGGC 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 6 cut(s) 39, 150, 203, 266, 551, 789
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 689
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 6 cut(s) 251, 294, 479, 488, 598, 794
NaeI GCCGGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 493
NdeII GATC 4 cut(s) 20, 43, 702, 757
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 3 cut(s) 154, 351, 523
NmeAIII GCCGAG 3 cut(s) 280, 435, 499
NspV TTCGAA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 711
PctI GAATGC 1 cut(s) 689
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 668, 770
PspN4I GGNNCC 3 cut(s) 154, 351, 523
PspPI GGNCC 4 cut(s) 411, 438, 484, 521
PsuI RGATCY 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 164
Sau3AI GATC 4 cut(s) 20, 43, 702, 757
Sau96I GGNCC 4 cut(s) 411, 438, 484, 521
ScrFI CCNGG 1 cut(s) 203
SetI ASST 5 cut(s) 144, 263, 464, 720, 757
SfaNI GCATC 2 cut(s) 241, 284
SfcI CTRYAG 1 cut(s) 376
SfuI TTCGAA 1 cut(s) 240
SinI GGWCC 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 3 cut(s) 276, 298, 538
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 3 cut(s) 165, 289, 398
TaaI ACNGT 3 cut(s) 54, 729, 803
TaiI ACGT 3 cut(s) 144, 263, 464
TaqI TCGA 4 cut(s) 19, 240, 566, 584
TasI AATT 3 cut(s) 276, 298, 538
TauI GCSGC 7 cut(s) 85, 93, 209, 397, 416, 485, 592
TfiI GAWTC 2 cut(s) 668, 770
TscAI CASTG 2 cut(s) 475, 734
TseI GCWGC 4 cut(s) 285, 391, 503, 622
TspDTI ATGAA 2 cut(s) 584, 690
TspRI CASTG 2 cut(s) 475, 734
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.