Rw6G007980

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013810
Physical Location & Seq
Forward (+)
13545036 .. 13546079
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007980.1

Sequence Viewer

Length: 813 bp
ATGCAAAACTCCTTCAATCGATCCAAACTCGACACCGCCGGAGATCCACAACAGTTGACCCAAAACCCACTTCCTCCTCCGCCGCCTCGCCGCCTCACCCAAGAGCAAGAACTCGCCGTAATCGTCTCCGCTCTACGAAACGTCGTCGCCGGCACCACCACCACCATGGACTTCAACTCTCTCTTCCCTTCCTACCATTACCCGGCCGCCGCTTCCTCCTCCTCCTCACCCGCCCTATTCGAAGCGTCTGATGCCGAGACGTGTCCGGTTTGTAAAATTCAAGGCTGCCTTGGATGCAATTTTTTCCCGCCAGCACAGGAGGAGAACAGCAACAACAACAACAACAAGAAGGCACCCAAGAAGAGGCTGAAGAAGAACTACAGGGGAGTGAGGCAGCGGCCTTGGGGCAAATGGGCCGCTGAAATCCGAGACCCGAGGAGGGCCACTCGGGTCTGGCTCGGCACGTTCCACACTGCCGAGGAGGCGGCCCGTGCATATGACAAGGCTGCCATTGAGTTTCGCGGTCCCAGAGCGAAACTCAATTTCCCGTTTCCGGATAACTCATTGTCGATGAACCAAGAAACTTCGACGCCGCCCACACAGCCCATTCAAGAACCCCAGAAGCAGCAGATAGTTGTTACAGATACTAAGCAAGAGAAGAAGAGCGAGGATTCAAATGAAATGGAATGCGAGTTCTGGGAAAGGATCGGGGAAGACGAGCTGTTTCAACAGTGGATGATGACGATGGACTACGCACCTGATCATTCGTCGGATTCTGGGAATGGGTCTGCGGGAAATGCTCACAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

270

Amino Acids

30.35

Weight (kDa)

6.14

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 126 - 175 3.4e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34410
fragaria_vesca FvH4_2g06050 FvH4_2g06060
malus_domestica MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica Prupe.8G125100_v2.0.a1
pyrus_communis pycom05g07360 pycom10g07840
rosa_chinensis RchiOBHm_Chr6g0257181
rosa_laevigata RLG00000014680
rosa_multiflora Rmu_sc0001228.1_g000009
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana Rw6G007980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 152, 352
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 1 cut(s) 522
AccIII TCCGGA 1 cut(s) 553
AclWI GGATC 3 cut(s) 15, 38, 713
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 590
AfiI CCNNNNNNNGG 4 cut(s) 202, 363, 439, 553
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 6 cut(s) 16, 175, 281, 611, 675, 728
AjiI CACGTC 1 cut(s) 261
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AloI GAACNNNNNNTCC 2 cut(s) 677, 709
AluBI AGCT 1 cut(s) 721
AluI AGCT 1 cut(s) 721
Alw26I GTCTC 3 cut(s) 130, 251, 423
AlwI GGATC 3 cut(s) 15, 38, 713
Ama87I CYCGRG 2 cut(s) 433, 447
Aor13HI TCCGGA 1 cut(s) 553
AoxI GGCC 5 cut(s) 204, 398, 414, 441, 486
ApeKI GCWGC 4 cut(s) 285, 394, 506, 625
ApoI RAATTY 1 cut(s) 276
AspS9I GGNCC 4 cut(s) 414, 441, 487, 524
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 88, 219
AsuII TTCGAA 1 cut(s) 240
AvaI CYCGRG 2 cut(s) 433, 447
AvaII GGWCC 1 cut(s) 524
BanI GGYRCC 2 cut(s) 152, 352
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BbsI GAAGAC 1 cut(s) 720
BbvI GCAGC 4 cut(s) 272, 406, 493, 637
BccI CCATC 1 cut(s) 739
BceAI ACGGC 1 cut(s) 101
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 3 cut(s) 130, 251, 423
BfmI CTRYAG 1 cut(s) 379
BglI GCCNNNNNGGC 1 cut(s) 482
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 524
BmeT110I CYCGRG 2 cut(s) 433, 447
BmgBI CACGTC 1 cut(s) 261
BmgT120I GGNCC 4 cut(s) 414, 441, 487, 524
BmiI GGNNCC 3 cut(s) 154, 354, 526
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 241, 284
BpiI GAAGAC 1 cut(s) 720
BplI GAGNNNNNCTC 4 cut(s) 430, 462, 522, 554
Bpu14I TTCGAA 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 590
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 5 cut(s) 165, 289, 401, 434, 477
BsaWI WCCGGW 2 cut(s) 265, 553
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 363, 439, 553
Bse118I RCCGGY 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 553
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 5 cut(s) 165, 289, 401, 434, 477
BseGI GGATG 2 cut(s) 299, 741
BseLI CCNNNNNNNGG 4 cut(s) 202, 363, 439, 553
BseRI GAGGAG 7 cut(s) 66, 208, 211, 214, 335, 451, 494
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 4 cut(s) 272, 406, 493, 637
Bsh1236I CGCG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 5 cut(s) 206, 400, 416, 443, 488
BshNI GGYRCC 2 cut(s) 152, 352
BshVI ATCGAT 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 207
BsiHKCI CYCGRG 2 cut(s) 433, 447
BsiSI CCGG 5 cut(s) 39, 150, 203, 266, 554
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 4 cut(s) 202, 363, 439, 553
BsmAI GTCTC 3 cut(s) 130, 251, 423
BsmBI CGTCTC 2 cut(s) 130, 251
BsmFI GGGAC 1 cut(s) 510
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 5 cut(s) 206, 400, 416, 443, 488
Bso31I GGTCTC 1 cut(s) 423
BsoBI CYCGRG 2 cut(s) 433, 447
Bsp119I TTCGAA 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 553
Bsp143I GATC 4 cut(s) 20, 43, 705, 760
Bsp19I CCATGG 1 cut(s) 165
BspANI GGCC 5 cut(s) 206, 400, 416, 443, 488
BspDI ATCGAT 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 553
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 3 cut(s) 154, 354, 526
BspPI GGATC 3 cut(s) 15, 38, 713
BspQI GCTCTTC 1 cut(s) 656
BspT104I TTCGAA 1 cut(s) 240
BspT107I GGYRCC 2 cut(s) 152, 352
BspTNI GGTCTC 1 cut(s) 423
BsrBI CCGCTC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 5 cut(s) 165, 289, 401, 434, 477
BssMI GATC 4 cut(s) 20, 43, 705, 760
BssNI GRCGYC 1 cut(s) 590
BssT1I CCWWGG 3 cut(s) 165, 289, 401
Bst4CI ACNGT 3 cut(s) 54, 732, 806
Bst6I CTCTTC 3 cut(s) 188, 356, 656
BstACI GRCGYC 1 cut(s) 590
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 151, 312
BstDEI CTNAG 1 cut(s) 648
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 299, 741
BstFNI CGCG 1 cut(s) 522
BstKTI GATC 4 cut(s) 23, 46, 708, 763
BstMAI GTCTC 3 cut(s) 130, 251, 423
BstMBI GATC 4 cut(s) 20, 43, 705, 760
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 6 cut(s) 251, 294, 482, 491, 601, 797
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 379
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 4 cut(s) 272, 406, 493, 637
BstV2I GAAGAC 1 cut(s) 720
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 5 cut(s) 206, 400, 416, 443, 488
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 261
BtsCI GGATG 2 cut(s) 299, 741
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 2 cut(s) 471, 737
Cac8I GCNNGC 2 cut(s) 151, 312
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 4 cut(s) 414, 441, 487, 524
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 2 cut(s) 234, 598
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 166
DdeI CTNAG 1 cut(s) 648
DpnI GATC 4 cut(s) 22, 45, 707, 762
DpnII GATC 4 cut(s) 20, 43, 705, 760
EaeI YGGCCR 1 cut(s) 204
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 3 cut(s) 188, 356, 656
EarI CTCTTC 3 cut(s) 188, 356, 656
EciI GGCGGA 1 cut(s) 69
EclXI CGGCCG 1 cut(s) 204
Eco130I CCWWGG 3 cut(s) 165, 289, 401
Eco31I GGTCTC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 524
Eco52I CGGCCG 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 389
Eco88I CYCGRG 2 cut(s) 433, 447
EcoT14I CCWWGG 3 cut(s) 165, 289, 401
ErhI CCWWGG 3 cut(s) 165, 289, 401
Esp3I CGTCTC 2 cut(s) 130, 251
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 167, 496, 498
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 510
FatI CATG 1 cut(s) 165
FauI CCCGC 3 cut(s) 238, 315, 784
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 760
FokI GGATG 2 cut(s) 306, 748
HaeIII GGCC 5 cut(s) 206, 400, 416, 443, 488
HapII CCGG 5 cut(s) 39, 150, 203, 266, 554
HgaI GACGC 2 cut(s) 234, 598
Hin1I GRCGYC 1 cut(s) 590
Hin1II CATG 1 cut(s) 169
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 671, 773
HpaII CCGG 5 cut(s) 39, 150, 203, 266, 554
HphI GGTGA 2 cut(s) 88, 219
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 250, 428, 772
Hpy188III TCNNGA 2 cut(s) 554, 611
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 4 cut(s) 146, 149, 592, 772
HpyAV CCTTC 3 cut(s) 22, 198, 343
HpyCH4III ACNGT 3 cut(s) 54, 732, 806
HpyCH4IV ACGT 3 cut(s) 141, 260, 464
HpyCH4V TGCA 3 cut(s) 4, 297, 494
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 294, 482, 491, 601, 797
HpyF3I CTNAG 1 cut(s) 648
HpySE526I ACGT 3 cut(s) 141, 260, 464
Hsp92I GRCGYC 1 cut(s) 590
Hsp92II CATG 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 553
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 4 cut(s) 20, 43, 705, 760
LguI GCTCTTC 1 cut(s) 656
Lsp1109I GCAGC 4 cut(s) 272, 406, 493, 637
LweI GCATC 2 cut(s) 241, 284
MaeII ACGT 3 cut(s) 141, 260, 464
MaeIII GTNAC 1 cut(s) 637
MalI GATC 4 cut(s) 22, 45, 707, 762
MbiI CCGCTC 1 cut(s) 131
MboI GATC 4 cut(s) 20, 43, 705, 760
MboII GAAGA 7 cut(s) 175, 373, 382, 385, 670, 673, 725
MflI RGATCY 1 cut(s) 43
MluCI AATT 3 cut(s) 276, 298, 541
MmeI TCCRAC 1 cut(s) 750
MroI TCCGGA 1 cut(s) 553
MroNI GCCGGC 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 2 cut(s) 397, 419
MspI CCGG 5 cut(s) 39, 150, 203, 266, 554
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 692
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 6 cut(s) 251, 294, 482, 491, 601, 797
NaeI GCCGGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 496
NdeII GATC 4 cut(s) 20, 43, 705, 760
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 3 cut(s) 154, 354, 526
NmeAIII GCCGAG 3 cut(s) 280, 438, 502
NspV TTCGAA 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 656
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 714
PctI GAATGC 1 cut(s) 692
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 671, 773
PspN4I GGNNCC 3 cut(s) 154, 354, 526
PspPI GGNCC 4 cut(s) 414, 441, 487, 524
PsuI RGATCY 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 656
Sau3AI GATC 4 cut(s) 20, 43, 705, 760
Sau96I GGNCC 4 cut(s) 414, 441, 487, 524
ScrFI CCNGG 1 cut(s) 203
SetI ASST 5 cut(s) 144, 263, 467, 723, 760
SfaNI GCATC 2 cut(s) 241, 284
SfcI CTRYAG 1 cut(s) 379
SfuI TTCGAA 1 cut(s) 240
SinI GGWCC 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 3 cut(s) 276, 298, 541
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 3 cut(s) 165, 289, 401
TaaI ACNGT 3 cut(s) 54, 732, 806
TaiI ACGT 3 cut(s) 144, 263, 467
TaqI TCGA 5 cut(s) 19, 30, 240, 569, 587
TasI AATT 3 cut(s) 276, 298, 541
TauI GCSGC 8 cut(s) 85, 93, 209, 212, 400, 419, 488, 595
TfiI GAWTC 2 cut(s) 671, 773
TscAI CASTG 2 cut(s) 478, 737
TseI GCWGC 4 cut(s) 285, 394, 506, 625
TspDTI ATGAA 2 cut(s) 587, 693
TspRI CASTG 2 cut(s) 478, 737
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.