Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Reverse (-)

16545190 .. 16548494

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATGCAATTAGAAAACAAGCTAGCAGGTTGAGAGAACAAGTTGCGAGACAGCAGCAGGCTGTCTTTAAGCAATTTGGAGGAGGGGGATATGGCTCTGGTTTAGCTGATGAAGCAGAACTCAATCAGCATCAGAAGCTAGAAAAGCTTTACATATCCACTCGTGCTGCTAAGCATTACCAAAGAGATATTGTTCGTGGTGTGGAAGGTTATATAGTTACAGGGTCAAAACAAGTTGAAATAGGTACGAAATTGTCTGAGGATAGCAGGAAATATGGTTCAGAGAATACATGTACGAATGGTAACGTATTAACACGGGCTGCACTGAACTATGGGCGTGCTCGAGCACAAATGGAGAAGGAACGTGGAAATATGTTGAAGGCTCTTGGTACACAGGTTGCTGAGCCATTACGGGCAATGGTTTTGGGAGCTCCATTGGAGGATGCTAGACATCTTGCTCAACGCTATGACAGAATGCGCCAAGAAGCTGAAGCTCAGGCTACAGAAGTTGCCAGACGCCAAGCAAAGGCGAGAGAGTCTCAAGGTAATCCTGACATCTTGATGAAACTGGAATCTGCTGAAGCAAAACTTCACGACCTAAAATCAAATATGACAATATTGGGGAAAGAAGCTGCTTCTGCTTTAGCTTCCGTTGAAGATCAACAACAGAAATTGACTCTTGAACGACTTCTTTCAATGGTTGAATCTGAACGCGCCTACCATCAAAGAGTCCTCCAAATACTTGATCAGCTCGAAGGAGAGATGGTATCTGAGAGGCAACGTATAGAAGCTCCCTCTACTCCCTCAAGCGCAGACAGTATGCCGCCACCTCCATCATATGAGGAAGCTAATGGAGTGTTTGCATCTCAGATGCATGACACGTCAACAGATAGCATGGGTTACTTCTTAGGAGAGGTCTTGTTCCCATATCACGGTGTGACAGATGTCGAGCTCAGCTTATCAACTGGTGAATACGTTGTTGTTAGAAAGGTTACAGGCAGTGGATGGGCCGAAGGTGAATGCAAAGGCAAAGCTGGTTGGTTCCCTTATGGGTACATTGAAAGACGGGAACGAGTTCTTGCTAGCAAAGTGTCCGAAGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

368

Amino Acids

40.92

Weight (kDa)

6.44

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_9	PF14604	283 - 331	5.2e-08	Variant SH3 domain
SH3_1	PF00018	283 - 326	1.4e-07	SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccII	CGCG	1 cut(s)	714
AciI	CCGC	1 cut(s)	824
AcuI	CTGAAG	2 cut(s)	510, 600
AcyI	GRCGYC	1 cut(s)	517
AdeI	CACNNNGTG	1 cut(s)	937
AfaI	GTAC	4 cut(s)	247, 295, 391, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	526, 932
AflIII	ACRYGT	2 cut(s)	290, 879
AgsI	TTSAA	7 cut(s)	239, 379, 656, 683, 696, 704, 1061
AjiI	CACGTC	1 cut(s)	882
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
Alw21I	GWGCWC	4 cut(s)	343, 349, 433, 954
Alw26I	GTCTC	2 cut(s)	43, 543
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	1 cut(s)	1008
ApeKI	GCWGC	4 cut(s)	55, 167, 320, 632
Asp700I	GAANNNNTTC	2 cut(s)	687, 1074
AspLEI	GCGC	3 cut(s)	480, 716, 812
AspS9I	GGNCC	1 cut(s)	1008
AsuHPI	GGTGA	2 cut(s)	980, 1028
AsuNHI	GCTAGC	2 cut(s)	23, 1082
AvaI	CYCGRG	1 cut(s)	342
BaeI	ACNNNNGTAYC	2 cut(s)	381, 414
BanII	GRGCYC	2 cut(s)	433, 954
BauI	CACGAG	1 cut(s)	162
Bbv12I	GWGCWC	4 cut(s)	343, 349, 433, 954
BbvI	GCAGC	4 cut(s)	67, 154, 307, 619
BccI	CCATC	4 cut(s)	729, 757, 841, 999
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	43, 543
BfaI	CTAG	4 cut(s)	24, 140, 447, 1083
BfmI	CTRYAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	5 cut(s)	56, 168, 321, 633, 824
BlpI	GCTNAGC	3 cut(s)	171, 402, 953
BlsI	GCNGC	5 cut(s)	57, 169, 322, 634, 825
BmeT110I	CYCGRG	1 cut(s)	342
BmgBI	CACGTC	1 cut(s)	882
BmgT120I	GGNCC	1 cut(s)	1008
BmiI	GGNNCC	1 cut(s)	1043
BmsI	GCATC	4 cut(s)	139, 433, 861, 872
BmtI	GCTAGC	2 cut(s)	27, 1086
BoxI	GACNNNNGTC	1 cut(s)	944
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu1102I	GCTNAGC	3 cut(s)	171, 402, 953
BpuEI	CTTGAG	2 cut(s)	525, 790
BsaHI	GRCGYC	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	750, 780
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 932
Bse1I	ACTGG	2 cut(s)	573, 970
Bse3DI	GCAATG	1 cut(s)	423
BseGI	GGATG	3 cut(s)	10, 448, 1010
BseLI	CCNNNNNNNGG	2 cut(s)	526, 932
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	6 cut(s)	249, 393, 509, 762, 881, 967
BseNI	ACTGG	2 cut(s)	573, 970
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	67, 154, 307, 619
BsgI	GTGCAG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	714
BshFI	GGCC	1 cut(s)	1010
BsiHKAI	GWGCWC	4 cut(s)	343, 349, 433, 954
BsiHKCI	CYCGRG	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	526, 932
BsmAI	GTCTC	2 cut(s)	43, 543
BsmI	GAATGC	2 cut(s)	480, 1025
BsnI	GGCC	1 cut(s)	1010
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	4 cut(s)	343, 349, 433, 954
Bsp143I	GATC	2 cut(s)	658, 745
Bsp1720I	GCTNAGC	3 cut(s)	171, 402, 953
BspACI	CCGC	1 cut(s)	824
BspANI	GGCC	1 cut(s)	1010
BspCNI	CTCAG	6 cut(s)	250, 394, 508, 763, 880, 966
BspFNI	CGCG	1 cut(s)	714
BspLI	GGNNCC	1 cut(s)	1043
BspMI	ACCTGC	1 cut(s)	18
BspOI	GCTAGC	2 cut(s)	27, 1086
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	573, 970
BssMI	GATC	2 cut(s)	658, 745
BssNI	GRCGYC	1 cut(s)	517
BssSI	CACGAG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	818, 935
BstACI	GRCGYC	1 cut(s)	517
BstC8I	GCNNGC	4 cut(s)	25, 60, 339, 1084
BstDEI	CTNAG	8 cut(s)	171, 258, 402, 495, 771, 867, 907, 953
BstF5I	GGATG	3 cut(s)	10, 448, 1010
BstFNI	CGCG	1 cut(s)	714
BstHHI	GCGC	3 cut(s)	480, 716, 812
BstKTI	GATC	2 cut(s)	661, 748
BstMAI	GTCTC	2 cut(s)	43, 543
BstMBI	GATC	2 cut(s)	658, 745
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 136, 145, 638
BstNSI	RCATGY	1 cut(s)	294
BstPAI	GACNNNNGTC	1 cut(s)	944
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	4 cut(s)	67, 154, 307, 619
BsuRI	GGCC	1 cut(s)	1010
BtrI	CACGTC	1 cut(s)	882
BtsCI	GGATG	3 cut(s)	10, 448, 1010
BtsI	GCAGTG	1 cut(s)	1006
BtsIMutI	CAGTG	2 cut(s)	323, 1006
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	4 cut(s)	25, 60, 339, 1084
CfoI	GCGC	3 cut(s)	480, 716, 812
Cfr13I	GGNCC	1 cut(s)	1008
CseI	GACGC	1 cut(s)	525
Csp6I	GTAC	4 cut(s)	246, 294, 390, 1054
CviAII	CATG	3 cut(s)	291, 875, 895
CviQI	GTAC	4 cut(s)	246, 294, 390, 1054
DdeI	CTNAG	8 cut(s)	171, 258, 402, 495, 771, 867, 907, 953
DpnI	GATC	2 cut(s)	660, 747
DpnII	GATC	2 cut(s)	658, 745
DraIII	CACNNNGTG	1 cut(s)	937
Ecl136II	GAGCTC	2 cut(s)	431, 952
Eco24I	GRGCYC	2 cut(s)	433, 954
Eco53kI	GAGCTC	2 cut(s)	431, 952
Eco57I	CTGAAG	2 cut(s)	510, 600
Eco88I	CYCGRG	1 cut(s)	342
EcoICRI	GAGCTC	2 cut(s)	431, 952
EcoT22I	ATGCAT	1 cut(s)	876
EcoT38I	GRGCYC	2 cut(s)	433, 954
FaeI	CATG	3 cut(s)	294, 878, 898
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FatI	CATG	3 cut(s)	290, 874, 894
FauNDI	CATATG	1 cut(s)	838
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	5 cut(s)	56, 168, 321, 633, 824
FokI	GGATG	3 cut(s)	17, 455, 1017
FriOI	GRGCYC	2 cut(s)	433, 954
Fsp4HI	GCNGC	5 cut(s)	56, 168, 321, 633, 824
FspBI	CTAG	4 cut(s)	24, 140, 447, 1083
GlaI	GCGC	3 cut(s)	479, 715, 811
GluI	GCNGC	5 cut(s)	56, 168, 321, 633, 824
HaeIII	GGCC	1 cut(s)	1010
HgaI	GACGC	1 cut(s)	525
HhaI	GCGC	3 cut(s)	480, 716, 812
Hin1I	GRCGYC	1 cut(s)	517
Hin1II	CATG	3 cut(s)	294, 878, 898
Hin6I	GCGC	3 cut(s)	478, 714, 810
HinP1I	GCGC	3 cut(s)	478, 714, 810
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	5 cut(s)	536, 572, 676, 704, 729
HphI	GGTGA	2 cut(s)	980, 1028
Hpy166II	GTNNAC	2 cut(s)	392, 885
Hpy188I	TCNGA	8 cut(s)	135, 259, 283, 709, 772, 870, 1096, 1106
Hpy188III	TCNNGA	4 cut(s)	551, 559, 593, 680
Hpy8I	GTNNAC	2 cut(s)	392, 885
HpyAV	CCTTC	5 cut(s)	200, 352, 373, 749, 1007
HpyCH4III	ACNGT	2 cut(s)	818, 935
HpyCH4IV	ACGT	5 cut(s)	306, 364, 781, 881, 975
HpyCH4V	TGCA	5 cut(s)	8, 323, 863, 874, 1023
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 136, 145, 638
HpyF3I	CTNAG	8 cut(s)	171, 258, 402, 495, 771, 867, 907, 953
HpySE526I	ACGT	5 cut(s)	306, 364, 781, 881, 975
Hsp92I	GRCGYC	1 cut(s)	517
Hsp92II	CATG	3 cut(s)	294, 878, 898
HspAI	GCGC	3 cut(s)	478, 714, 810
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	2 cut(s)	658, 745
LmnI	GCTCC	3 cut(s)	428, 436, 796
Lsp1109I	GCAGC	4 cut(s)	67, 154, 307, 619
LweI	GCATC	4 cut(s)	139, 433, 861, 872
MaeI	CTAG	4 cut(s)	24, 140, 447, 1083
MaeII	ACGT	5 cut(s)	306, 364, 781, 881, 975
MaeIII	GTNAC	5 cut(s)	217, 302, 899, 937, 991
MalI	GATC	2 cut(s)	660, 747
MboI	GATC	2 cut(s)	658, 745
MboII	GAAGA	1 cut(s)	668
MhlI	GDGCHC	4 cut(s)	343, 349, 433, 954
MluCI	AATT	4 cut(s)	9, 74, 251, 671
MlyI	GAGTC	3 cut(s)	545, 670, 738
Mph1103I	ATGCAT	1 cut(s)	876
MroXI	GAANNNNTTC	2 cut(s)	687, 1074
MseI	TTAA	2 cut(s)	69, 311
MslI	CAYNNNNRTG	1 cut(s)	560
Mva1269I	GAATGC	2 cut(s)	480, 1025
MvnI	CGCG	1 cut(s)	714
MwoI	GCNNNNNNNGC	4 cut(s)	113, 136, 145, 638
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	2 cut(s)	658, 745
NheI	GCTAGC	2 cut(s)	23, 1082
NlaIII	CATG	3 cut(s)	294, 878, 898
NlaIV	GGNNCC	1 cut(s)	1043
NmuCI	GTSAC	1 cut(s)	937
NsiI	ATGCAT	1 cut(s)	876
NspI	RCATGY	1 cut(s)	294
PaeR7I	CTCGAG	1 cut(s)	342
PciI	ACATGT	1 cut(s)	290
PctI	GAATGC	2 cut(s)	480, 1025
PdmI	GAANNNNTTC	2 cut(s)	687, 1074
PfeI	GAWTC	2 cut(s)	572, 704
PkrI	GCNGC	5 cut(s)	57, 169, 322, 634, 825
PleI	GAGTC	3 cut(s)	544, 670, 737
PpsI	GAGTC	3 cut(s)	544, 670, 737
PscI	ACATGT	1 cut(s)	290
PshAI	GACNNNNGTC	1 cut(s)	944
Psp124BI	GAGCTC	2 cut(s)	433, 954
PspN4I	GGNNCC	1 cut(s)	1043
PspPI	GGNCC	1 cut(s)	1008
PspXI	VCTCGAGB	1 cut(s)	342
RsaI	GTAC	4 cut(s)	247, 295, 391, 1055
RsaNI	GTAC	4 cut(s)	246, 294, 390, 1054
RseI	CAYNNNNRTG	1 cut(s)	560
SacI	GAGCTC	2 cut(s)	433, 954
SaqAI	TTAA	2 cut(s)	69, 311
SatI	GCNGC	5 cut(s)	56, 168, 321, 633, 824
Sau3AI	GATC	2 cut(s)	658, 745
Sau96I	GGNCC	1 cut(s)	1008
SchI	GAGTC	3 cut(s)	545, 670, 738
SduI	GDGCHC	4 cut(s)	343, 349, 433, 954
SfaNI	GCATC	4 cut(s)	139, 433, 861, 872
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	342
SlaI	CTCGAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	3 cut(s)	342, 540, 805
SmoI	CTYRAG	3 cut(s)	342, 540, 805
Sse9I	AATT	4 cut(s)	9, 74, 251, 671
SsiI	CCGC	1 cut(s)	824
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	4 cut(s)	24, 140, 447, 1083
SstI	GAGCTC	2 cut(s)	433, 954
TaaI	ACNGT	2 cut(s)	818, 935
TaiI	ACGT	5 cut(s)	309, 367, 784, 884, 978
TaqI	TCGA	3 cut(s)	343, 753, 948
TasI	AATT	4 cut(s)	9, 74, 251, 671
TauI	GCSGC	1 cut(s)	826
TfiI	GAWTC	2 cut(s)	572, 704
Tru1I	TTAA	2 cut(s)	69, 311
Tru9I	TTAA	2 cut(s)	69, 311
TscAI	CASTG	2 cut(s)	330, 1006
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	4 cut(s)	55, 167, 320, 632
Tsp45I	GTSAC	1 cut(s)	937
TspDTI	ATGAA	2 cut(s)	126, 578
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	2 cut(s)	330, 1006
XceI	RCATGY	1 cut(s)	294
XhoI	CTCGAG	1 cut(s)	342
XmnI	GAANNNNTTC	2 cut(s)	687, 1074
XspI	CTAG	4 cut(s)	24, 140, 447, 1083
Zsp2I	ATGCAT	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.