FvH4_2g39000

protein binding

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
28112528 .. 28116081
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39000.t1

Sequence Viewer

Length: 1101 bp
ATGGAAACAATCCGGAAGCTGAGAGATCAGGTCGCTAAACAGCAGCAGGCTGTCTTCAAACAATTTGCTGGTGGCATGTACGGAAGTTCCGATAATGTTGTGGACGAAACAGAACTCCAGCAGCATCAGAAACTCGAGAAGTTGTTCATATCGACTCGTGCCGGCAAGCATTACCAAAGGGATATCGTGCGTGGTGTGGAAGGGTATATTGTAACTGGTTCAAAGCTAGTTGAAATAGGTACCAAGTTATCAGAAGATAGCAGGAAATATGGTTCTGAAAAAACTTGTACCACTGGTAACACGTTATCCCGCGCTGCACTGAGTTTTGGAAGAGCTCGTGCCCAAATGGAAAAGGAGTGTGGAATTCTACTGAAAGCCCTTGGCACGCAGGTTGCAGAGCCTTTAAGAGCGATGGTAGTGGGTGCACCCTTGGAGGATGCTCGACATCTTGCTCAACGATACAGTAGAATGAGACAAGAAGCTGAAGCTCAGGCTATTGATGTTTCCAGACGGCAAGTCAAAGTGAGGGAATCTGCAGGTAATTCAGATGTTATCATGAAACTAGAAGCTGCCGAAGCCAAACTTCAGGAGCTAAAATCCAATGTTGCAATATTGGGAAAAGAAGCTGCTGCAGCAATGGCAGCTGTAGAAGGTCAACAACAGAGGTTGACTCTTCAGCGACTTATTGCCATGGTTGAAGCGGAGCGCAATTATCATCAGAATGTCCTCCAGATACTTAATCGGCTTGAAGGGGAGATGTTGTCAGAACACCAACGAATTGAAGCATCGCCCAGTCCAGCTGCAGAGAATACTATGCCTCCACCACCCTCATATGAAGAGGTCAACCATGACTTTACTTCTGAAACCCATGATGATTTAACAGACATCAGGGACTATTTCTTAGGAGAGGCTATGTACACATTTCAAGGTGTAACTGATGTGGAGTTAAGTTTGTCTTTCGGGGATTATGTTGTTGTCCGGAAGGTTTCAAACAACGGTTGGGCTGAAGGTGAGTGCAAGGGAAAAGCAGGTTGGTTCCCGGTTAACTACGTAGAAAGGCGGGAACGTGTTCAGGCGAGCAAGGTGGCCGCAGTCTTTTAA

Protein Analysis

367

Amino Acids

40.84

Weight (kDa)

6.24

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_9 PF14604 304 - 352 8e-11 Variant SH3 domain
SH3_1 PF00018 304 - 348 2.8e-08 SH3 domain
SH3_2 PF07653 315 - 352 9.9e-07 Variant SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 379, 527, 1019
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 239
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 2 cut(s) 12, 978
AciI CCGC 4 cut(s) 310, 701, 1060, 1089
AcoI YGGCCR 1 cut(s) 1086
AcsI RAATTY 1 cut(s) 363
AcuI CTGAAG 4 cut(s) 504, 569, 659, 1026
AfaI GTAC 4 cut(s) 80, 241, 289, 917
AflIII ACRYGT 2 cut(s) 300, 1066
AgsI TTSAA 8 cut(s) 58, 222, 233, 698, 749, 782, 926, 990
AhdI GACNNNNNGTC 1 cut(s) 515
AjuI GAANNNNNNNTTGG 2 cut(s) 1015, 1047
AloI GAACNNNNNNTCC 2 cut(s) 256, 288
Alw21I GWGCWC 2 cut(s) 337, 427
Alw26I GTCTC 1 cut(s) 466
Alw44I GTGCAC 1 cut(s) 423
Ama87I CYCGRG 1 cut(s) 134
Aor13HI TCCGGA 2 cut(s) 12, 978
AoxI GGCC 1 cut(s) 1086
ApaLI GTGCAC 1 cut(s) 423
ApeKI GCWGC 9 cut(s) 43, 121, 314, 569, 626, 629, 632, 641, 800
ApoI RAATTY 1 cut(s) 363
Asp700I GAANNNNTTC 2 cut(s) 143, 1068
Asp718I GGTACC 1 cut(s) 239
AspLEI GCGC 2 cut(s) 314, 708
AsuC2I CCSGG 1 cut(s) 1040
AsuHPI GGTGA 1 cut(s) 1022
AvaI CYCGRG 1 cut(s) 134
BaeGI GKGCMC 2 cut(s) 343, 427
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 337
BauI CACGAG 2 cut(s) 156, 336
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 2 cut(s) 337, 427
BbvI GCAGC 9 cut(s) 55, 133, 301, 556, 613, 616, 644, 653, 787
BccI CCATC 1 cut(s) 406
BceAI ACGGC 1 cut(s) 527
BcnI CCSGG 1 cut(s) 1040
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 2 cut(s) 227, 563
BfmI CTRYAG 4 cut(s) 534, 630, 645, 801
BfuAI ACCTGC 3 cut(s) 379, 527, 1019
Bme1390I CCNGG 1 cut(s) 1040
BmeRI GACNNNNNGTC 1 cut(s) 515
BmeT110I CYCGRG 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 241, 1037
BmrFI CCNGG 1 cut(s) 1040
BmrI ACTGGG 1 cut(s) 786
BmsI GCATC 3 cut(s) 133, 427, 794
BmuI ACTGGG 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 655, 687
BpmI CTGGAG 2 cut(s) 101, 713
Bpu10I CCTNAGC 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 1040
BsaAI YACGTR 1 cut(s) 1051
BsaJI CCNNGG 3 cut(s) 379, 429, 690
BsaWI WCCGGW 2 cut(s) 12, 978
BsaXI ACNNNNNCTCC 4 cut(s) 746, 776, 802, 832
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 3 cut(s) 220, 298, 792
Bse3DI GCAATG 1 cut(s) 642
BseAI TCCGGA 2 cut(s) 12, 978
BseDI CCNNGG 3 cut(s) 379, 429, 690
BseGI GGATG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 3 cut(s) 11, 311, 503
BseNI ACTGG 3 cut(s) 220, 298, 792
BseSI GKGCMC 2 cut(s) 343, 427
BseXI GCAGC 9 cut(s) 55, 133, 301, 556, 613, 616, 644, 653, 787
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 1088
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 337, 427
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 4 cut(s) 13, 162, 979, 1040
BslFI GGGAC 1 cut(s) 905
BsmAI GTCTC 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 905
BsnI GGCC 1 cut(s) 1088
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 337, 343, 427
Bsp13I TCCGGA 2 cut(s) 12, 978
Bsp1407I TGTACA 1 cut(s) 915
Bsp143I GATC 1 cut(s) 25
Bsp19I CCATGG 1 cut(s) 690
BspACI CCGC 4 cut(s) 310, 701, 1060, 1089
BspANI GGCC 1 cut(s) 1088
BspCNI CTCAG 3 cut(s) 12, 312, 502
BspEI TCCGGA 2 cut(s) 12, 978
BspFNI CGCG 1 cut(s) 312
BspHI TCATGA 1 cut(s) 555
BspLI GGNNCC 2 cut(s) 241, 1037
BspMAI CTGCAG 3 cut(s) 538, 634, 805
BspMI ACCTGC 3 cut(s) 379, 527, 1019
BspQI GCTCTTC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 642
BsrFI RCCGGY 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 915
BsrI ACTGG 3 cut(s) 220, 298, 792
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 3 cut(s) 379, 429, 690
BssMI GATC 1 cut(s) 25
BssSI CACGAG 2 cut(s) 156, 336
BssT1I CCWWGG 3 cut(s) 379, 429, 690
Bst2BI CACGAG 2 cut(s) 156, 336
Bst4CI ACNGT 2 cut(s) 464, 998
Bst6I CTCTTC 3 cut(s) 325, 678, 831
BstAUI TGTACA 1 cut(s) 915
BstBAI YACGTR 1 cut(s) 1051
BstC8I GCNNGC 5 cut(s) 48, 163, 167, 386, 1078
BstDEI CTNAG 4 cut(s) 20, 320, 489, 901
BstDSI CCRYGG 1 cut(s) 690
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 2 cut(s) 314, 708
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 4 cut(s) 575, 632, 638, 641
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 1038
BstSFI CTRYAG 4 cut(s) 534, 630, 645, 801
BstSLI GKGCMC 2 cut(s) 343, 427
BstSNI TACGTA 1 cut(s) 1051
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 9 cut(s) 55, 133, 301, 556, 613, 616, 644, 653, 787
BstV2I GAAGAC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 1088
BtgI CCRYGG 1 cut(s) 690
BtgZI GCGATG 2 cut(s) 425, 771
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 291, 317
BveI ACCTGC 3 cut(s) 379, 527, 1019
Cac8I GCNNGC 5 cut(s) 48, 163, 167, 386, 1078
CciI TCATGA 1 cut(s) 555
CfoI GCGC 2 cut(s) 314, 708
Cfr10I RCCGGY 1 cut(s) 161
Csp6I GTAC 4 cut(s) 79, 240, 288, 916
CviAII CATG 5 cut(s) 76, 556, 691, 848, 869
CviQI GTAC 4 cut(s) 79, 240, 288, 916
DdeI CTNAG 4 cut(s) 20, 320, 489, 901
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DriI GACNNNNNGTC 1 cut(s) 515
EaeI YGGCCR 1 cut(s) 1086
Eam1104I CTCTTC 3 cut(s) 325, 678, 831
Eam1105I GACNNNNNGTC 1 cut(s) 515
EarI CTCTTC 3 cut(s) 325, 678, 831
Ecl136II GAGCTC 1 cut(s) 335
Eco105I TACGTA 1 cut(s) 1051
Eco130I CCWWGG 3 cut(s) 379, 429, 690
Eco24I GRGCYC 1 cut(s) 337
Eco32I GATATC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 335
Eco57I CTGAAG 4 cut(s) 504, 569, 659, 1026
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 363
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 3 cut(s) 379, 429, 690
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 3 cut(s) 379, 429, 690
FaeI CATG 5 cut(s) 79, 559, 694, 851, 872
FalI AAGNNNNNCTT 4 cut(s) 567, 599, 940, 972
FaqI GGGAC 1 cut(s) 905
FatI CATG 5 cut(s) 75, 555, 690, 847, 868
FauI CCCGC 2 cut(s) 317, 1053
FauNDI CATATG 1 cut(s) 832
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 1 cut(s) 337
FspBI CTAG 2 cut(s) 227, 563
GlaI GCGC 2 cut(s) 313, 707
GsuI CTGGAG 2 cut(s) 101, 713
HaeIII GGCC 1 cut(s) 1088
HapII CCGG 4 cut(s) 13, 162, 979, 1040
HhaI GCGC 2 cut(s) 314, 708
Hin1II CATG 5 cut(s) 79, 559, 694, 851, 872
Hin6I GCGC 2 cut(s) 312, 706
HinP1I GCGC 2 cut(s) 312, 706
HincII GTYRAC 4 cut(s) 656, 669, 844, 1045
HindII GTYRAC 4 cut(s) 656, 669, 844, 1045
HinfI GANTC 3 cut(s) 154, 530, 670
HpaI GTTAAC 1 cut(s) 1045
HpaII CCGG 4 cut(s) 13, 162, 979, 1040
HphI GGTGA 1 cut(s) 1022
Hpy166II GTNNAC 7 cut(s) 103, 425, 656, 669, 844, 918, 1045
Hpy188I TCNGA 8 cut(s) 91, 129, 253, 277, 547, 720, 766, 862
Hpy188III TCNNGA 7 cut(s) 13, 136, 507, 556, 587, 730, 979
Hpy8I GTNNAC 7 cut(s) 103, 425, 656, 669, 844, 918, 1045
HpyAV CCTTC 5 cut(s) 194, 644, 743, 976, 1001
HpyCH4III ACNGT 2 cut(s) 464, 998
HpyCH4IV ACGT 3 cut(s) 302, 1050, 1066
HpyCH4V TGCA 8 cut(s) 317, 395, 425, 536, 608, 632, 803, 1017
HpyF10VI GCNNNNNNNGC 4 cut(s) 575, 632, 638, 641
HpyF3I CTNAG 4 cut(s) 20, 320, 489, 901
HpySE526I ACGT 3 cut(s) 302, 1050, 1066
Hsp92II CATG 5 cut(s) 79, 559, 694, 851, 872
HspAI GCGC 2 cut(s) 312, 706
Kpn2I TCCGGA 2 cut(s) 12, 978
KpnI GGTACC 1 cut(s) 243
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 1045
Kzo9I GATC 1 cut(s) 25
LguI GCTCTTC 1 cut(s) 325
LmnI GCTCC 2 cut(s) 589, 703
Lsp1109I GCAGC 9 cut(s) 55, 133, 301, 556, 613, 616, 644, 653, 787
LweI GCATC 3 cut(s) 133, 427, 794
MaeI CTAG 2 cut(s) 227, 563
MaeII ACGT 3 cut(s) 302, 1050, 1066
MaeIII GTNAC 3 cut(s) 211, 296, 931
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 5 cut(s) 46, 266, 342, 665, 848
MhlI GDGCHC 3 cut(s) 337, 343, 427
MluCI AATT 5 cut(s) 62, 363, 541, 709, 777
MlyI GAGTC 2 cut(s) 148, 664
MnlI CCTC 8 cut(s) 427, 519, 657, 737, 828, 832, 838, 901
MroI TCCGGA 2 cut(s) 12, 978
MroNI GCCGGC 1 cut(s) 161
MroXI GAANNNNTTC 2 cut(s) 143, 1068
MseI TTAA 6 cut(s) 404, 738, 878, 947, 1044, 1099
MslI CAYNNNNRTG 1 cut(s) 720
MspA1I CMGCKG 2 cut(s) 644, 800
MspI CCGG 4 cut(s) 13, 162, 979, 1040
MspR9I CCNGG 1 cut(s) 1040
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 4 cut(s) 575, 632, 638, 641
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 1040
NcoI CCATGG 1 cut(s) 690
NdeI CATATG 1 cut(s) 832
NdeII GATC 1 cut(s) 25
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 5 cut(s) 79, 559, 694, 851, 872
NlaIV GGNNCC 2 cut(s) 241, 1037
NspI RCATGY 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 134
PagI TCATGA 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 163
PdmI GAANNNNTTC 2 cut(s) 143, 1068
PfeI GAWTC 1 cut(s) 530
PleI GAGTC 2 cut(s) 148, 664
PpsI GAGTC 2 cut(s) 148, 664
Ppu21I YACGTR 1 cut(s) 1051
Psp124BI GAGCTC 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 241, 1037
PstI CTGCAG 3 cut(s) 538, 634, 805
PvuII CAGCTG 2 cut(s) 644, 800
RsaI GTAC 4 cut(s) 80, 241, 289, 917
RsaNI GTAC 4 cut(s) 79, 240, 288, 916
RseI CAYNNNNRTG 1 cut(s) 720
SacI GAGCTC 1 cut(s) 337
SapI GCTCTTC 1 cut(s) 325
SaqAI TTAA 6 cut(s) 404, 738, 878, 947, 1044, 1099
Sau3AI GATC 1 cut(s) 25
SchI GAGTC 2 cut(s) 148, 664
ScrFI CCNGG 1 cut(s) 1040
SduI GDGCHC 3 cut(s) 337, 343, 427
SfaNI GCATC 3 cut(s) 133, 427, 794
SfcI CTRYAG 4 cut(s) 534, 630, 645, 801
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SnaBI TACGTA 1 cut(s) 1051
Sse9I AATT 5 cut(s) 62, 363, 541, 709, 777
SsiI CCGC 4 cut(s) 310, 701, 1060, 1089
SspI AATATT 1 cut(s) 612
SspMI CTAG 2 cut(s) 227, 563
SstI GAGCTC 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 1038
StyI CCWWGG 3 cut(s) 379, 429, 690
TaaI ACNGT 2 cut(s) 464, 998
TaiI ACGT 3 cut(s) 305, 1053, 1069
TaqI TCGA 3 cut(s) 135, 152, 442
TasI AATT 5 cut(s) 62, 363, 541, 709, 777
TatI WGTACW 1 cut(s) 915
TauI GCSGC 1 cut(s) 1091
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 6 cut(s) 404, 738, 878, 947, 1044, 1099
Tru9I TTAA 6 cut(s) 404, 738, 878, 947, 1044, 1099
TscAI CASTG 2 cut(s) 298, 324
TseI GCWGC 9 cut(s) 43, 121, 314, 569, 626, 629, 632, 641, 800
TspDTI ATGAA 3 cut(s) 136, 572, 849
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 2 cut(s) 298, 324
VneI GTGCAC 1 cut(s) 423
XapI RAATTY 1 cut(s) 363
XceI RCATGY 1 cut(s) 79
XhoI CTCGAG 1 cut(s) 134
XmnI GAANNNNTTC 2 cut(s) 143, 1068
XspI CTAG 2 cut(s) 227, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.