Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

1454824 .. 1456726

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1019800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAACTAGAAGCTGCTGAAGCCGAGCTTCAGGAGCTGCAGTCTAGCGTTGCAATATTGGGAAAAGAAGCTAGTGCAGCTATGGCTGCTGTTGAAGGTCAACAACAAAGATTGACTCTTCAGCGGCTTCTTGCGATGGTTGAAGCAGAGCGCAACTACCATCCAAACATTCTTCAGATACTTGATCAGCTTGAAGGCGAGATTTTGTCAGAAAAGCAGCGAATTGAAGCATCGCATAGTCCGCCTACAGAGGACGCTATGCCTCCACCACCATCGTATAAGGATCTCAGCCGTAGCTTTGCTTCTGAAACCTATGATGAATTGACAGAGTTGAGGGACTCTTTCTTAGGAGAGGTAATGTACACCTTCCACACTGTAACTGATGTGGAGTTAAGTTTGTCATTCGGGGATTACGTTGTCGTCCGGAAGCCATGCCACTTGCCAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

150

Amino Acids

16.65

Weight (kDa)

4.59

Isoelectric Point (pI)

72.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	423
AciI	CCGC	2 cut(s)	124, 242
AclWI	GGATC	1 cut(s)	291
AcuI	CTGAAG	4 cut(s)	14, 39, 104, 158
AfaI	GTAC	1 cut(s)	362
AgsI	TTSAA	4 cut(s)	95, 143, 194, 227
AluBI	AGCT	7 cut(s)	14, 28, 37, 71, 80, 190, 297
AluI	AGCT	7 cut(s)	14, 28, 37, 71, 80, 190, 297
AlwI	GGATC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	423
ApeKI	GCWGC	5 cut(s)	14, 37, 77, 86, 217
AspLEI	GCGC	1 cut(s)	153
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
BbvI	GCAGC	4 cut(s)	24, 73, 89, 229
BccI	CCATC	3 cut(s)	130, 168, 280
BceAI	ACGGC	1 cut(s)	276
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	3 cut(s)	8, 45, 72
BfmI	CTRYAG	2 cut(s)	38, 246
BisI	GCNGC	6 cut(s)	15, 38, 78, 87, 125, 218
BlsI	GCNGC	6 cut(s)	16, 39, 79, 88, 126, 219
BmsI	GCATC	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
BseAI	TCCGGA	1 cut(s)	423
BseGI	GGATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	301
BseXI	GCAGC	4 cut(s)	24, 73, 89, 229
BsgI	GTGCAG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	350
Bsp13I	TCCGGA	1 cut(s)	423
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	184, 283
BspACI	CCGC	2 cut(s)	124, 242
BspCNI	CTCAG	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	42
BspPI	GGATC	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	360
BssMI	GATC	2 cut(s)	184, 283
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	2 cut(s)	287, 346
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	2 cut(s)	187, 286
BstMBI	GATC	2 cut(s)	184, 283
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 34, 77, 83, 86, 241
BstSFI	CTRYAG	2 cut(s)	38, 246
BstV1I	GCAGC	4 cut(s)	24, 73, 89, 229
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BtgZI	GCGATG	2 cut(s)	149, 216
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	444
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	153
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	432
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	287, 346
DpnI	GATC	2 cut(s)	186, 285
DpnII	GATC	2 cut(s)	184, 283
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	231
Eco57I	CTGAAG	4 cut(s)	14, 39, 104, 158
FaeI	CATG	1 cut(s)	435
FaiI	YATR	6 cut(s)	83, 237, 260, 279, 315, 433
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	431
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	6 cut(s)	15, 38, 78, 87, 125, 218
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	6 cut(s)	15, 38, 78, 87, 125, 218
FspBI	CTAG	3 cut(s)	8, 45, 72
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	6 cut(s)	15, 38, 78, 87, 125, 218
HapII	CCGG	1 cut(s)	424
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	435
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	115, 338
HpaII	CCGG	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	101, 363
Hpy188I	TCNGA	3 cut(s)	177, 211, 307
Hpy188III	TCNNGA	2 cut(s)	32, 424
Hpy8I	GTNNAC	2 cut(s)	101, 363
HpyAV	CCTTC	3 cut(s)	89, 188, 376
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	3 cut(s)	40, 53, 77
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 34, 77, 83, 86, 241
HpyF3I	CTNAG	2 cut(s)	287, 346
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	1 cut(s)	435
HspAI	GCGC	1 cut(s)	151
Kpn2I	TCCGGA	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	184, 283
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	2 cut(s)	17, 437
Lsp1109I	GCAGC	4 cut(s)	24, 73, 89, 229
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	3 cut(s)	8, 45, 72
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	186, 285
MboI	GATC	2 cut(s)	184, 283
MboII	GAAGA	2 cut(s)	110, 164
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	2 cut(s)	222, 320
MlyI	GAGTC	2 cut(s)	109, 332
MnlI	CCTC	4 cut(s)	244, 273, 327, 346
MroI	TCCGGA	1 cut(s)	423
MseI	TTAA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	6 cut(s)	20, 34, 77, 83, 86, 241
NdeII	GATC	2 cut(s)	184, 283
NlaIII	CATG	1 cut(s)	435
NmeAIII	GCCGAG	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PkrI	GCNGC	6 cut(s)	16, 39, 79, 88, 126, 219
PleI	GAGTC	2 cut(s)	109, 332
PpsI	GAGTC	2 cut(s)	109, 332
PstI	CTGCAG	1 cut(s)	42
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	6 cut(s)	15, 38, 78, 87, 125, 218
Sau3AI	GATC	2 cut(s)	184, 283
SchI	GAGTC	2 cut(s)	109, 332
SfaNI	GCATC	1 cut(s)	239
SfcI	CTRYAG	2 cut(s)	38, 246
Sse9I	AATT	2 cut(s)	222, 320
SsiI	CCGC	2 cut(s)	124, 242
SspI	AATATT	1 cut(s)	57
SspMI	CTAG	3 cut(s)	8, 45, 72
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	1 cut(s)	417
TasI	AATT	2 cut(s)	222, 320
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	5 cut(s)	14, 37, 77, 86, 217
TspDTI	ATGAA	2 cut(s)	17, 333
TspRI	CASTG	1 cut(s)	379
XspI	CTAG	3 cut(s)	8, 45, 72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.