Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

1453667 .. 1454797

Gene Structure 1131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1019700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAATTTCAACAGCATCAGAAACTCGAGAAGCTGTACATATCAACTCGTGCTGCCAAGGTTGCTACGCTTATTTTTGTCTCATTACCAAAAGGAAATTGTCCGCGGAGTGGAAGGTTACATTGTGGCCAGTTCAAAGCACGGTGAAATAGGTACCAAGCTATCAGAAGATCGCAGGAAATATGGTTCTGAAAAGACTTGCAGCAGTGGTAACACATTGTCGAGAGCTGCACTGAGTTTTGGAAGAGCTCGCGCCCAACTGGAAAAAGAGTGCGGAGTTGCAGAGCCTTTAAAAGCAATGATAGTGAGAGCGCCCTTGGAGGATGCTCGACATCTAGCTCAACGATATGCTAGAATGCGGCGAGAAGCTGAAGCTCAGGTATATGCAGTTTCTTCTGTTTCCTACCAATTTTATACTACAGTGATTTTATATGTTACATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

148

Amino Acids

16.76

Weight (kDa)

9.81

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	152
AccII	CGCG	2 cut(s)	105, 252
AciI	CCGC	4 cut(s)	103, 105, 273, 358
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	37, 154
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	10, 135
AloI	GAACNNNNNNTCC	2 cut(s)	169, 201
AluBI	AGCT	7 cut(s)	33, 160, 227, 248, 338, 368, 374
AluI	AGCT	7 cut(s)	33, 160, 227, 248, 338, 368, 374
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	84
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	52, 201, 227
ApoI	RAATTY	1 cut(s)	4
Asp718I	GGTACC	1 cut(s)	152
AspLEI	GCGC	2 cut(s)	254, 313
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	250
BauI	CACGAG	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	39, 213, 214
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	335, 351
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	314
BisI	GCNGC	4 cut(s)	53, 202, 228, 359
BlsI	GCNGC	4 cut(s)	54, 203, 229, 360
BmeT110I	CYCGRG	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	2 cut(s)	24, 313
Bpu10I	CCTNAGC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	56, 103, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	129, 264
Bse3DI	GCAATG	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	56, 103, 315
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	224, 389
BseNI	ACTGG	2 cut(s)	129, 264
BseXI	GCAGC	3 cut(s)	39, 213, 214
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	2 cut(s)	105, 252
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp1407I	TGTACA	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	4 cut(s)	103, 105, 273, 358
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	225, 388
BspFNI	CGCG	2 cut(s)	105, 252
BspLI	GGNNCC	1 cut(s)	154
BspQI	GCTCTTC	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	303
BsrGI	TGTACA	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	129, 264
BssECI	CCNNGG	3 cut(s)	56, 103, 315
BssMI	GATC	1 cut(s)	169
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	2 cut(s)	56, 315
Bst2BI	CACGAG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	143, 421
Bst6I	CTCTTC	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	233, 375
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	105, 252
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	2 cut(s)	254, 313
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	2 cut(s)	105, 252
BstV1I	GCAGC	3 cut(s)	39, 213, 214
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	3 cut(s)	211, 230, 426
Cac8I	GCNNGC	1 cut(s)	250
CfoI	GCGC	2 cut(s)	254, 313
Cfr42I	CCGCGG	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	36, 153
CviAII	CATG	1 cut(s)	438
CviJI	RGCY	9 cut(s)	33, 128, 160, 227, 248, 286, 338, 368, 374
CviKI_1	RGCY	9 cut(s)	33, 128, 160, 227, 248, 286, 338, 368, 374
CviQI	GTAC	2 cut(s)	36, 153
DdeI	CTNAG	2 cut(s)	233, 375
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DraI	TTTAAA	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	248
Eco130I	CCWWGG	2 cut(s)	56, 315
Eco24I	GRGCYC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	248
EcoT14I	CCWWGG	2 cut(s)	56, 315
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	2 cut(s)	56, 315
FaeI	CATG	1 cut(s)	441
FaiI	YATR	9 cut(s)	40, 183, 348, 382, 384, 414, 430, 432, 439
FatI	CATG	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	53, 202, 228, 359
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	4 cut(s)	53, 202, 228, 359
FspBI	CTAG	2 cut(s)	335, 351
GlaI	GCGC	2 cut(s)	253, 312
GluI	GCNGC	4 cut(s)	53, 202, 228, 359
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	254, 313
Hin1II	CATG	1 cut(s)	441
Hin6I	GCGC	2 cut(s)	252, 311
HinP1I	GCGC	2 cut(s)	252, 311
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	3 cut(s)	20, 166, 190
Hpy188III	TCNNGA	2 cut(s)	27, 222
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	143, 421
HpyCH4V	TGCA	4 cut(s)	201, 230, 281, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	2 cut(s)	233, 375
Hsp92II	CATG	1 cut(s)	441
HspAI	GCGC	2 cut(s)	252, 311
KpnI	GGTACC	1 cut(s)	156
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	169
LguI	GCTCTTC	1 cut(s)	238
LpnPI	CCDG	4 cut(s)	142, 160, 245, 362
Lsp1109I	GCAGC	3 cut(s)	39, 213, 214
LweI	GCATC	2 cut(s)	24, 313
MaeI	CTAG	2 cut(s)	335, 351
MaeIII	GTNAC	3 cut(s)	116, 209, 433
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	3 cut(s)	179, 255, 384
MhlI	GDGCHC	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	3 cut(s)	4, 96, 407
MluNI	TGGCCA	1 cut(s)	128
MnlI	CCTC	1 cut(s)	313
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	360
MvnI	CGCG	2 cut(s)	105, 252
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	441
NlaIV	GGNNCC	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	238
PctI	GAATGC	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	54, 203, 229, 360
Psp124BI	GAGCTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	37, 154
RsaNI	GTAC	2 cut(s)	36, 153
SacI	GAGCTC	1 cut(s)	250
SacII	CCGCGG	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	4 cut(s)	53, 202, 228, 359
Sau3AI	GATC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	2 cut(s)	24, 313
SfcI	CTRYAG	1 cut(s)	417
Sfr274I	CTCGAG	1 cut(s)	25
Sfr303I	CCGCGG	1 cut(s)	106
SgrBI	CCGCGG	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	3 cut(s)	4, 96, 407
SsiI	CCGC	4 cut(s)	103, 105, 273, 358
SspMI	CTAG	2 cut(s)	335, 351
SstI	GAGCTC	1 cut(s)	250
StyI	CCWWGG	2 cut(s)	56, 315
TaaI	ACNGT	2 cut(s)	143, 421
TaqI	TCGA	3 cut(s)	26, 221, 328
TasI	AATT	3 cut(s)	4, 96, 407
TatI	WGTACW	1 cut(s)	35
TauI	GCSGC	1 cut(s)	361
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	3 cut(s)	211, 237, 426
TseI	GCWGC	3 cut(s)	52, 201, 227
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	211, 237, 426
XapI	RAATTY	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	25
XspI	CTAG	2 cut(s)	335, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.