Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

7513932 .. 7516998

Gene Structure 3067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011195

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAAGCAATCAGGAAGATAAGAGATCAGGTCGCTAAACAGCAACAGGCTGTCTTCAAACAATTTGCTGGTGGCATATATGGGAGTTCGGATAATGTTGTCGCGGACGAAACAGAACTCCAACAGCATCAGAAACTCGAGAAGTTGTTCATATCAACTCGTGCCGGCAAGCATTACCAAAGGGATATTGTGCGTGGTGTAGAAAGTTATATTGTAACCGGTTCAAAGCTAGTTGAAATAGGTACCAAGTTATCAGAAGATAGCAGGAAATATGGTGCTGAAAAAACTTGCACTACTGGTAACACATTATCCCGCGCTGCACTGAGTTTTGGAAGAGCTCGTGCCCAGATGGAAAAGGAGTGTGGAATTCTACTGAAAGCCCTTGGCACACAGGTTGCAGAGCCTTTAAGAGCGATGGTAGTGGGTGCACCCTTGGAGGATGCTCGACATCTTGCTCAACGATACAGTAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGATGTTTCCAGACGCCAAGTCAAAGTACGGGAATCCGCAGGTAATGTAGATATTATCATGAAACTAGAAGCTGCTGAAGCCAAACTTCAGGAGCTAAAGTCCAATGTTGCAATATTGGGAAAAGAAGCTGCTGCAGCAATGGCAGCTGTAGAAGGTCAACAACAGAGGTTGACTCTTCAGCGACTTATTGCCATGGTTGAAGCAGAGCGCAATTATCATCAGACTGTCCTCCAGATACTTGATCGGCTTGAAGGCGAGATGTTGTCAGAACACCAGCGAATTGGAGCATCCCCTAGTCCAGCTGCAGAGAATACTATGCCTCCACCACCCTCATATGAAGAGGTCAACCATGACTTTTCTTCTGAAATCCATGATGATTTAACAGACATCAGGGACTATTTCTTAGGAGAGGCTATGTACACATTTCAAGGTGTAACTGATGTGGAGTTGAGTTTGTCTTTCGGGGATTATGTTGTTGTCCGAAAGGTTTCAAACAATGGTTGGGCTGAAGGTGAATGTAAGGGAAAAGCAGGTTGGTTCCCGTTTAACTACATAGAACGGCGGGAACGTGTTCATGCGAGCAAGGTGGCTGCAGTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

368

Amino Acids

40.89

Weight (kDa)

6.3

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_9	PF14604	305 - 353	9.4e-10	Variant SH3 domain
SH3_1	PF00018	305 - 348	5.1e-08	SH3 domain
SH3_2	PF07653	316 - 353	5.3e-07	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	530, 1022
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccII	CGCG	2 cut(s)	104, 315
AciI	CCGC	4 cut(s)	104, 313, 537, 1063
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	5 cut(s)	507, 572, 597, 662, 1029
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	3 cut(s)	244, 528, 920
AflIII	ACRYGT	1 cut(s)	1069
AgeI	ACCGGT	1 cut(s)	218
AgsI	TTSAA	7 cut(s)	58, 225, 236, 701, 752, 929, 993
AhdI	GACNNNNNGTC	1 cut(s)	518
AjuI	GAANNNNNNNTTGG	2 cut(s)	1018, 1050
AluBI	AGCT	9 cut(s)	229, 338, 485, 491, 572, 595, 629, 647, 803
AluI	AGCT	9 cut(s)	229, 338, 485, 491, 572, 595, 629, 647, 803
Alw21I	GWGCWC	2 cut(s)	340, 430
Alw44I	GTGCAC	1 cut(s)	426
Ama87I	CYCGRG	1 cut(s)	137
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	8 cut(s)	317, 572, 629, 632, 635, 644, 803, 1091
ApoI	RAATTY	1 cut(s)	366
AsiGI	ACCGGT	1 cut(s)	218
Asp700I	GAANNNNTTC	3 cut(s)	146, 988, 1071
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	317, 711
AsuHPI	GGTGA	1 cut(s)	1025
AvaI	CYCGRG	1 cut(s)	137
BaeGI	GKGCMC	2 cut(s)	346, 430
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	340
BauI	CACGAG	2 cut(s)	159, 339
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	2 cut(s)	340, 430
BbvI	GCAGC	8 cut(s)	304, 559, 616, 619, 647, 656, 790, 1078
BccI	CCATC	2 cut(s)	343, 409
BceAI	ACGGC	1 cut(s)	1076
BfaI	CTAG	3 cut(s)	230, 566, 795
BfmI	CTRYAG	4 cut(s)	633, 648, 804, 1092
BfuAI	ACCTGC	2 cut(s)	530, 1022
BisI	GCNGC	8 cut(s)	318, 573, 630, 633, 636, 645, 804, 1092
BlsI	GCNGC	8 cut(s)	319, 574, 631, 634, 637, 646, 805, 1093
BmeRI	GACNNNNNGTC	1 cut(s)	518
BmeT110I	CYCGRG	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	244, 1040
BmsI	GCATC	3 cut(s)	136, 430, 797
BpiI	GAAGAC	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	658, 690
BpmI	CTGGAG	1 cut(s)	716
Bpu10I	CCTNAGC	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	3 cut(s)	382, 432, 693
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	4 cut(s)	584, 614, 805, 835
Bse118I	RCCGGY	2 cut(s)	164, 218
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	645
BseDI	CCNNGG	3 cut(s)	382, 432, 693
BseGI	GGATG	2 cut(s)	445, 788
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	2 cut(s)	314, 506
BseNI	ACTGG	1 cut(s)	301
BseSI	GKGCMC	2 cut(s)	346, 430
BseXI	GCAGC	8 cut(s)	304, 559, 616, 619, 647, 656, 790, 1078
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	2 cut(s)	104, 315
BshNI	GGYRCC	1 cut(s)	242
BshTI	ACCGGT	1 cut(s)	218
BsiHKAI	GWGCWC	2 cut(s)	340, 430
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	165, 219
BslFI	GGGAC	1 cut(s)	908
BsmFI	GGGAC	1 cut(s)	908
BsmI	GAATGC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	3 cut(s)	340, 346, 430
Bsp1407I	TGTACA	1 cut(s)	918
Bsp143I	GATC	2 cut(s)	25, 742
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	4 cut(s)	104, 313, 537, 1063
BspCNI	CTCAG	2 cut(s)	315, 505
BspFNI	CGCG	2 cut(s)	104, 315
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	244, 1040
BspMAI	CTGCAG	3 cut(s)	637, 808, 1096
BspMI	ACCTGC	2 cut(s)	530, 1022
BspQI	GCTCTTC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	645
BsrFI	RCCGGY	2 cut(s)	164, 218
BsrGI	TGTACA	1 cut(s)	918
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	2 cut(s)	164, 218
BssECI	CCNNGG	3 cut(s)	382, 432, 693
BssMI	GATC	2 cut(s)	25, 742
BssNI	GRCGYC	1 cut(s)	514
BssSI	CACGAG	2 cut(s)	159, 339
BssT1I	CCWWGG	3 cut(s)	382, 432, 693
Bst2BI	CACGAG	2 cut(s)	159, 339
Bst4CI	ACNGT	2 cut(s)	467, 727
Bst6I	CTCTTC	3 cut(s)	328, 681, 834
BstACI	GRCGYC	1 cut(s)	514
BstAUI	TGTACA	1 cut(s)	918
BstC8I	GCNNGC	3 cut(s)	166, 170, 1081
BstDEI	CTNAG	3 cut(s)	323, 492, 904
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	2 cut(s)	445, 788
BstFNI	CGCG	2 cut(s)	104, 315
BstHHI	GCGC	2 cut(s)	317, 711
BstKTI	GATC	2 cut(s)	28, 745
BstMBI	GATC	2 cut(s)	25, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	578, 635, 641, 644
BstSFI	CTRYAG	4 cut(s)	633, 648, 804, 1092
BstSLI	GKGCMC	2 cut(s)	346, 430
BstUI	CGCG	2 cut(s)	104, 315
BstV1I	GCAGC	8 cut(s)	304, 559, 616, 619, 647, 656, 790, 1078
BstV2I	GAAGAC	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	782
BtgI	CCRYGG	1 cut(s)	693
BtgZI	GCGATG	1 cut(s)	428
BtsCI	GGATG	2 cut(s)	445, 788
BtsIMutI	CAGTG	1 cut(s)	320
BveI	ACCTGC	2 cut(s)	530, 1022
Cac8I	GCNNGC	3 cut(s)	166, 170, 1081
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	2 cut(s)	317, 711
Cfr10I	RCCGGY	2 cut(s)	164, 218
CseI	GACGC	1 cut(s)	522
Csp6I	GTAC	3 cut(s)	243, 527, 919
CspAI	ACCGGT	1 cut(s)	218
CviAII	CATG	5 cut(s)	559, 694, 851, 872, 1076
CviQI	GTAC	3 cut(s)	243, 527, 919
DdeI	CTNAG	3 cut(s)	323, 492, 904
DpnI	GATC	2 cut(s)	27, 744
DpnII	GATC	2 cut(s)	25, 742
DriI	GACNNNNNGTC	1 cut(s)	518
Eam1104I	CTCTTC	3 cut(s)	328, 681, 834
Eam1105I	GACNNNNNGTC	1 cut(s)	518
EarI	CTCTTC	3 cut(s)	328, 681, 834
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	3 cut(s)	382, 432, 693
Eco24I	GRGCYC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	5 cut(s)	507, 572, 597, 662, 1029
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	366
EcoT14I	CCWWGG	3 cut(s)	382, 432, 693
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	3 cut(s)	382, 432, 693
FaeI	CATG	5 cut(s)	562, 697, 854, 875, 1079
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	5 cut(s)	558, 693, 850, 871, 1075
FauI	CCCGC	2 cut(s)	320, 1056
FauNDI	CATATG	1 cut(s)	835
Fnu4HI	GCNGC	8 cut(s)	318, 573, 630, 633, 636, 645, 804, 1092
FokI	GGATG	2 cut(s)	452, 775
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	8 cut(s)	318, 573, 630, 633, 636, 645, 804, 1092
FspBI	CTAG	3 cut(s)	230, 566, 795
GlaI	GCGC	2 cut(s)	316, 710
GluI	GCNGC	8 cut(s)	318, 573, 630, 633, 636, 645, 804, 1092
GsuI	CTGGAG	1 cut(s)	716
HapII	CCGG	2 cut(s)	165, 219
HgaI	GACGC	1 cut(s)	522
HhaI	GCGC	2 cut(s)	317, 711
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	5 cut(s)	562, 697, 854, 875, 1079
Hin6I	GCGC	2 cut(s)	315, 709
HinP1I	GCGC	2 cut(s)	315, 709
HincII	GTYRAC	3 cut(s)	659, 672, 847
HindII	GTYRAC	3 cut(s)	659, 672, 847
HinfI	GANTC	2 cut(s)	533, 673
HpaII	CCGG	2 cut(s)	165, 219
HphI	GGTGA	1 cut(s)	1025
Hpy166II	GTNNAC	5 cut(s)	428, 659, 672, 847, 921
Hpy188I	TCNGA	7 cut(s)	91, 132, 256, 723, 769, 865, 983
Hpy188III	TCNNGA	6 cut(s)	13, 139, 510, 559, 590, 733
Hpy8I	GTNNAC	5 cut(s)	428, 659, 672, 847, 921
HpyAV	CCTTC	3 cut(s)	647, 746, 1004
HpyCH4III	ACNGT	2 cut(s)	467, 727
HpyCH4IV	ACGT	1 cut(s)	1069
HpyCH4V	TGCA	8 cut(s)	291, 320, 398, 428, 611, 635, 806, 1094
HpyF10VI	GCNNNNNNNGC	4 cut(s)	578, 635, 641, 644
HpyF3I	CTNAG	3 cut(s)	323, 492, 904
HpySE526I	ACGT	1 cut(s)	1069
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	5 cut(s)	562, 697, 854, 875, 1079
HspAI	GCGC	2 cut(s)	315, 709
KpnI	GGTACC	1 cut(s)	246
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	25, 742
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	592, 785
Lsp1109I	GCAGC	8 cut(s)	304, 559, 616, 619, 647, 656, 790, 1078
LweI	GCATC	3 cut(s)	136, 430, 797
MaeI	CTAG	3 cut(s)	230, 566, 795
MaeII	ACGT	1 cut(s)	1069
MaeIII	GTNAC	3 cut(s)	214, 299, 934
MalI	GATC	2 cut(s)	27, 744
MboI	GATC	2 cut(s)	25, 742
MboII	GAAGA	7 cut(s)	28, 46, 269, 345, 668, 851, 852
MhlI	GDGCHC	3 cut(s)	340, 346, 430
MluCI	AATT	4 cut(s)	62, 366, 712, 780
MlyI	GAGTC	1 cut(s)	667
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	7 cut(s)	430, 660, 740, 831, 835, 841, 904
MroNI	GCCGGC	1 cut(s)	164
MroXI	GAANNNNTTC	3 cut(s)	146, 988, 1071
MseI	TTAA	4 cut(s)	407, 881, 1047, 1102
MspA1I	CMGCKG	2 cut(s)	647, 803
MspI	CCGG	2 cut(s)	165, 219
Mva1269I	GAATGC	1 cut(s)	477
MvnI	CGCG	2 cut(s)	104, 315
MwoI	GCNNNNNNNGC	4 cut(s)	578, 635, 641, 644
NaeI	GCCGGC	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	693
NdeI	CATATG	1 cut(s)	835
NdeII	GATC	2 cut(s)	25, 742
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	5 cut(s)	562, 697, 854, 875, 1079
NlaIV	GGNNCC	2 cut(s)	244, 1040
PaeR7I	CTCGAG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	1066
PctI	GAATGC	1 cut(s)	477
PdiI	GCCGGC	1 cut(s)	166
PdmI	GAANNNNTTC	3 cut(s)	146, 988, 1071
PfeI	GAWTC	1 cut(s)	533
PinAI	ACCGGT	1 cut(s)	218
PkrI	GCNGC	8 cut(s)	319, 574, 631, 634, 637, 646, 805, 1093
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
Psp124BI	GAGCTC	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	244, 1040
PstI	CTGCAG	3 cut(s)	637, 808, 1096
PvuII	CAGCTG	2 cut(s)	647, 803
RsaI	GTAC	3 cut(s)	244, 528, 920
RsaNI	GTAC	3 cut(s)	243, 527, 919
SacI	GAGCTC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	4 cut(s)	407, 881, 1047, 1102
SatI	GCNGC	8 cut(s)	318, 573, 630, 633, 636, 645, 804, 1092
Sau3AI	GATC	2 cut(s)	25, 742
SchI	GAGTC	1 cut(s)	667
SduI	GDGCHC	3 cut(s)	340, 346, 430
SfaNI	GCATC	3 cut(s)	136, 430, 797
SfcI	CTRYAG	4 cut(s)	633, 648, 804, 1092
Sfr274I	CTCGAG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	4 cut(s)	62, 366, 712, 780
SsiI	CCGC	4 cut(s)	104, 313, 537, 1063
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	3 cut(s)	230, 566, 795
SstI	GAGCTC	1 cut(s)	340
StyI	CCWWGG	3 cut(s)	382, 432, 693
TaaI	ACNGT	2 cut(s)	467, 727
TaiI	ACGT	1 cut(s)	1072
TaqI	TCGA	2 cut(s)	138, 445
TasI	AATT	4 cut(s)	62, 366, 712, 780
TatI	WGTACW	1 cut(s)	918
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	4 cut(s)	407, 881, 1047, 1102
Tru9I	TTAA	4 cut(s)	407, 881, 1047, 1102
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	8 cut(s)	317, 572, 629, 632, 635, 644, 803, 1091
TspDTI	ATGAA	4 cut(s)	139, 575, 852, 1064
TspRI	CASTG	1 cut(s)	327
VneI	GTGCAC	1 cut(s)	426
XapI	RAATTY	1 cut(s)	366
XhoI	CTCGAG	1 cut(s)	137
XmnI	GAANNNNTTC	3 cut(s)	146, 988, 1071
XspI	CTAG	3 cut(s)	230, 566, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.