Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

33828518 .. 33832103

Gene Structure 3586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G371000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAAGCAATCAGGAAGCTAAGAGATCAGGTTGCTAAACAGCAGCAGGTTGTCTTCAAACAATTTTCTGGTGGCATTTATGGGGGTTCGGATAATATTGTGCCAGATGAAACAGAACTCCAACAGCATCAAAAACTTGAGAGACTCTACATATCAACTCGTGCTGCCAAGCATTATCAAAAGGAGATTGTCCGTGGCGTGGAAGGTTATATTGTAACTGGTTCAAAGCAAGTTGAAATAGGTACCAAGTTATCAGAAGATAGCAGGAAATATGGTGCTGAAAAAACTTGCACCACTGGCAACACATTATCGAGAGCTGCACTGAGTTTTGGAAGAGCTCGTGCCCAAATTGAAAAAGAGTGTGGAATTCTACTGAAAGCCCTTGGCACACAGGTTGCAGAGCCTTTAAGAGCAATGGTAGTGGGAGCGCCCTTGGAGGATGCTCGACATCTTGCTCAACGATATGCTAGAATGCGGCAAGAAGCTGAAGCTCAGGCTGTAGATGTTTCCAGACGCCAAGCCAAAGTACGAGAATCTGCTGGTAGTGCCGATATTATCATGAAACTAGAAGCTGCTGAAGCCAAGCTTGAGGAACTAAAGTCTAACGTTGCAATATTGGGAAAAGAAGCTGGTGCAGCAATGGCTGCTGTTGAAGGTCAACAACAGAGATGGACTCTTCAGCGGCTTCTTGCAATGGTTGAAGCAGAGCGCAACTATCATCAAAACGTTCTTCAGATACTTGATCAACTTGAAGGCGAGATGTTGTCAGAACACCAGCGAATTGAAGCATCACCTAATCCCGCTACAGAGAACACTATGCCTCCCCCACCATCATATGAAGATCTCAGCAATAACTTTTCTTCTGAAACCTATGATGAATTGACAGACATCAGGGACTATTTCTTAGGAGAGGTTATGTACACGTTTCAAGCTGTGACTGATGTGGAGTTGAGTTTGTCTTTTGGGGATTATGTCGTTGTCCGGAAGGTGGCAAACAACGGTTGGGCTGAAGGTGAATGTAAGGGAAAAGCAGGTTGGTTCCCGTTTGACTATGTAGAAAGGCGGGAGCGTGCTCTTGCTAGCAAGGTGGCTGCAGTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

368

Amino Acids

40.96

Weight (kDa)

5.65

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	37, 1022
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	981
AciI	CCGC	4 cut(s)	475, 682, 801, 1063
AclI	AACGTT	2 cut(s)	606, 726
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	5 cut(s)	507, 597, 662, 716, 1029
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	3 cut(s)	244, 528, 920
AfiI	CCNNNNNNNGG	2 cut(s)	199, 988
AflIII	ACRYGT	1 cut(s)	921
AgsI	TTSAA	9 cut(s)	58, 225, 236, 353, 653, 701, 752, 785, 929
AjuI	GAANNNNNNNTTGG	2 cut(s)	1018, 1050
AluBI	AGCT	9 cut(s)	19, 317, 338, 485, 491, 572, 586, 629, 932
AluI	AGCT	9 cut(s)	19, 317, 338, 485, 491, 572, 586, 629, 932
Alw21I	GWGCWC	2 cut(s)	340, 1075
Alw26I	GTCTC	1 cut(s)	136
Aor13HI	TCCGGA	1 cut(s)	981
ApeKI	GCWGC	7 cut(s)	43, 164, 317, 572, 635, 644, 1091
ApoI	RAATTY	1 cut(s)	366
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	430, 711
AsuHPI	GGTGA	2 cut(s)	783, 1025
AsuNHI	GCTAGC	1 cut(s)	1079
BaeGI	GKGCMC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	340
BauI	CACGAG	2 cut(s)	159, 339
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	2 cut(s)	340, 1075
BbvI	GCAGC	7 cut(s)	55, 151, 304, 559, 631, 647, 1078
BccI	CCATC	2 cut(s)	663, 838
BclI	TGATCA	1 cut(s)	742
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	3 cut(s)	468, 566, 1080
BfmI	CTRYAG	3 cut(s)	498, 804, 1092
BfoI	RGCGCY	1 cut(s)	431
BfuAI	ACCTGC	2 cut(s)	37, 1022
BglII	AGATCT	1 cut(s)	841
BisI	GCNGC	9 cut(s)	44, 165, 318, 476, 573, 636, 645, 683, 1092
BlsI	GCNGC	9 cut(s)	45, 166, 319, 477, 574, 637, 646, 684, 1093
BmiI	GGNNCC	2 cut(s)	244, 1040
BmsI	GCATC	3 cut(s)	136, 430, 797
BmtI	GCTAGC	1 cut(s)	1083
BpiI	GAAGAC	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	658, 690
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	2 cut(s)	158, 608
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	3 cut(s)	193, 382, 432
BsaWI	WCCGGW	1 cut(s)	981
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 988
Bse1I	ACTGG	2 cut(s)	223, 301
Bse3DI	GCAATG	3 cut(s)	420, 645, 699
BseAI	TCCGGA	1 cut(s)	981
BseDI	CCNNGG	3 cut(s)	193, 382, 432
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	2 cut(s)	199, 988
BseMI	GCAATG	3 cut(s)	420, 645, 699
BseMII	CTCAG	3 cut(s)	314, 506, 859
BseNI	ACTGG	2 cut(s)	223, 301
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	7 cut(s)	55, 151, 304, 559, 631, 647, 1078
BsgI	GTGCAG	2 cut(s)	303, 654
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	2 cut(s)	340, 1075
BsiSI	CCGG	1 cut(s)	982
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	2 cut(s)	199, 988
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	908
BsmI	GAATGC	1 cut(s)	477
Bsp1286I	GDGCHC	3 cut(s)	340, 346, 1075
Bsp13I	TCCGGA	1 cut(s)	981
Bsp1407I	TGTACA	1 cut(s)	918
Bsp143I	GATC	3 cut(s)	25, 742, 841
BspACI	CCGC	4 cut(s)	475, 682, 801, 1063
BspCNI	CTCAG	3 cut(s)	315, 505, 858
BspEI	TCCGGA	1 cut(s)	981
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	244, 1040
BspMAI	CTGCAG	1 cut(s)	1096
BspMI	ACCTGC	2 cut(s)	37, 1022
BspOI	GCTAGC	1 cut(s)	1083
BspQI	GCTCTTC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	3 cut(s)	420, 645, 699
BsrGI	TGTACA	1 cut(s)	918
BsrI	ACTGG	2 cut(s)	223, 301
BssECI	CCNNGG	3 cut(s)	193, 382, 432
BssMI	GATC	3 cut(s)	25, 742, 841
BssNI	GRCGYC	1 cut(s)	514
BssSI	CACGAG	2 cut(s)	159, 339
BssT1I	CCWWGG	2 cut(s)	382, 432
Bst2BI	CACGAG	2 cut(s)	159, 339
Bst4CI	ACNGT	1 cut(s)	1001
Bst6I	CTCTTC	2 cut(s)	328, 681
BstACI	GRCGYC	1 cut(s)	514
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstAUI	TGTACA	1 cut(s)	918
BstC8I	GCNNGC	2 cut(s)	1071, 1081
BstDEI	CTNAG	5 cut(s)	20, 323, 492, 845, 904
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	2 cut(s)	430, 711
BstKTI	GATC	3 cut(s)	28, 745, 844
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	3 cut(s)	25, 742, 841
BstMWI	GCNNNNNNNGC	6 cut(s)	297, 545, 578, 635, 641, 644
BstSFI	CTRYAG	3 cut(s)	498, 804, 1092
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	7 cut(s)	55, 151, 304, 559, 631, 647, 1078
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	841
BstYI	RGATCY	1 cut(s)	841
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	294, 320
BveI	ACCTGC	2 cut(s)	37, 1022
Cac8I	GCNNGC	2 cut(s)	1071, 1081
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	2 cut(s)	430, 711
CseI	GACGC	1 cut(s)	522
Csp6I	GTAC	3 cut(s)	243, 527, 919
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	1 cut(s)	559
CviQI	GTAC	3 cut(s)	243, 527, 919
DdeI	CTNAG	5 cut(s)	20, 323, 492, 845, 904
DpnI	GATC	3 cut(s)	27, 744, 843
DpnII	GATC	3 cut(s)	25, 742, 841
Eam1104I	CTCTTC	2 cut(s)	328, 681
EarI	CTCTTC	2 cut(s)	328, 681
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	382, 432
Eco24I	GRGCYC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	5 cut(s)	507, 597, 662, 716, 1029
EcoICRI	GAGCTC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	366
EcoT14I	CCWWGG	2 cut(s)	382, 432
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	2 cut(s)	382, 432
FaeI	CATG	1 cut(s)	562
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	1 cut(s)	558
FauI	CCCGC	2 cut(s)	808, 1056
FauNDI	CATATG	1 cut(s)	835
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	9 cut(s)	44, 165, 318, 476, 573, 636, 645, 683, 1092
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	9 cut(s)	44, 165, 318, 476, 573, 636, 645, 683, 1092
FspBI	CTAG	3 cut(s)	468, 566, 1080
GlaI	GCGC	2 cut(s)	429, 710
GluI	GCNGC	9 cut(s)	44, 165, 318, 476, 573, 636, 645, 683, 1092
HaeII	RGCGCY	1 cut(s)	431
HapII	CCGG	1 cut(s)	982
HgaI	GACGC	1 cut(s)	522
HhaI	GCGC	2 cut(s)	430, 711
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	1 cut(s)	562
Hin6I	GCGC	2 cut(s)	428, 709
HinP1I	GCGC	2 cut(s)	428, 709
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	3 cut(s)	144, 533, 673
HpaII	CCGG	1 cut(s)	982
HphI	GGTGA	2 cut(s)	783, 1025
Hpy166II	GTNNAC	2 cut(s)	659, 921
Hpy188I	TCNGA	5 cut(s)	91, 256, 735, 769, 865
Hpy188III	TCNNGA	5 cut(s)	13, 312, 510, 559, 982
Hpy8I	GTNNAC	2 cut(s)	659, 921
HpyAV	CCTTC	5 cut(s)	197, 647, 746, 979, 1004
HpyCH4III	ACNGT	1 cut(s)	1001
HpyCH4IV	ACGT	3 cut(s)	606, 726, 923
HpyCH4V	TGCA	7 cut(s)	291, 320, 398, 611, 635, 692, 1094
HpyF10VI	GCNNNNNNNGC	6 cut(s)	297, 545, 578, 635, 641, 644
HpyF3I	CTNAG	5 cut(s)	20, 323, 492, 845, 904
HpySE526I	ACGT	3 cut(s)	606, 726, 923
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	1 cut(s)	562
HspAI	GCGC	2 cut(s)	428, 709
Kpn2I	TCCGGA	1 cut(s)	981
KpnI	GGTACC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	3 cut(s)	25, 742, 841
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	425, 1066
Lsp1109I	GCAGC	7 cut(s)	55, 151, 304, 559, 631, 647, 1078
LweI	GCATC	3 cut(s)	136, 430, 797
MaeI	CTAG	3 cut(s)	468, 566, 1080
MaeII	ACGT	3 cut(s)	606, 726, 923
MaeIII	GTNAC	2 cut(s)	214, 934
MalI	GATC	3 cut(s)	27, 744, 843
MboI	GATC	3 cut(s)	25, 742, 841
MboII	GAAGA	7 cut(s)	46, 269, 345, 668, 722, 851, 852
MflI	RGATCY	1 cut(s)	841
MhlI	GDGCHC	3 cut(s)	340, 346, 1075
MluCI	AATT	5 cut(s)	62, 348, 366, 780, 878
MlyI	GAGTC	2 cut(s)	138, 667
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	430, 583, 831, 904
MroI	TCCGGA	1 cut(s)	981
MseI	TTAA	2 cut(s)	407, 1102
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	1 cut(s)	982
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	6 cut(s)	297, 545, 578, 635, 641, 644
NdeI	CATATG	1 cut(s)	835
NdeII	GATC	3 cut(s)	25, 742, 841
NheI	GCTAGC	1 cut(s)	1079
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	2 cut(s)	244, 1040
NmuCI	GTSAC	1 cut(s)	934
PagI	TCATGA	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	328
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	9 cut(s)	45, 166, 319, 477, 574, 637, 646, 684, 1093
PleI	GAGTC	2 cut(s)	138, 667
PpsI	GAGTC	2 cut(s)	138, 667
Psp124BI	GAGCTC	1 cut(s)	340
Psp1406I	AACGTT	2 cut(s)	606, 726
PspN4I	GGNNCC	2 cut(s)	244, 1040
PstI	CTGCAG	1 cut(s)	1096
PsuI	RGATCY	1 cut(s)	841
RsaI	GTAC	3 cut(s)	244, 528, 920
RsaNI	GTAC	3 cut(s)	243, 527, 919
SacI	GAGCTC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	407, 1102
SatI	GCNGC	9 cut(s)	44, 165, 318, 476, 573, 636, 645, 683, 1092
Sau3AI	GATC	3 cut(s)	25, 742, 841
SchI	GAGTC	2 cut(s)	138, 667
SduI	GDGCHC	3 cut(s)	340, 346, 1075
SfaNI	GCATC	3 cut(s)	136, 430, 797
SfcI	CTRYAG	3 cut(s)	498, 804, 1092
SmlI	CTYRAG	2 cut(s)	137, 587
SmoI	CTYRAG	2 cut(s)	137, 587
Sse9I	AATT	5 cut(s)	62, 348, 366, 780, 878
SsiI	CCGC	4 cut(s)	475, 682, 801, 1063
SspI	AATATT	2 cut(s)	97, 615
SspMI	CTAG	3 cut(s)	468, 566, 1080
SstI	GAGCTC	1 cut(s)	340
StyI	CCWWGG	2 cut(s)	382, 432
TaaI	ACNGT	1 cut(s)	1001
TaiI	ACGT	3 cut(s)	609, 729, 926
TaqI	TCGA	2 cut(s)	311, 445
TasI	AATT	5 cut(s)	62, 348, 366, 780, 878
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	2 cut(s)	478, 685
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	2 cut(s)	407, 1102
Tru9I	TTAA	2 cut(s)	407, 1102
TscAI	CASTG	2 cut(s)	301, 327
TseFI	GTSAC	1 cut(s)	934
TseI	GCWGC	7 cut(s)	43, 164, 317, 572, 635, 644, 1091
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	4 cut(s)	123, 575, 852, 891
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	301, 327
XapI	RAATTY	1 cut(s)	366
XspI	CTAG	3 cut(s)	468, 566, 1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.