Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

1426797 .. 1428581

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1018900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGATGCAATCAGGAAGCTCAGAGATCAGGTCGCCAAGCAACAGCAGGCTGTGTTCAAACAATTTTCTGGTGGCATATATGGGGGATCGGATAATGTTGCCTCGGATGAAAATGAATTTCAACAGCATCAGAAACTCGAGAAGCTGTACATATCAACTCGTGCTGCCAAGCATTACCAAAAGGAAATTGTCCGCGGAGTGGAAGGTTACATTGTGGCCGGTTCAAAGCACGTTGAAATAGGTACCAAGCTATCAGAAGATAGCAGGAAATATGGTTCTGAAAAGACTTGCACCAGTGATAACACATTGTCGAGAGCTGCACTTAGTTGCATAGCCTTTATAGTGGGAGCGCCCATGGAGGATGCTCGACATCTTGCTCAACGTTATGCTAGAATGCGGCAAGAAGCTGAAGCTCAGGTCCACATCTCAACCCAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

147

Amino Acids

16.35

Weight (kDa)

8.87

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccII	CGCG	1 cut(s)	195
AciI	CCGC	3 cut(s)	193, 195, 397
AclI	AACGTT	1 cut(s)	382
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	2 cut(s)	149, 244
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	58, 122, 225, 236
AloI	GAACNNNNNNTCC	2 cut(s)	259, 291
AluBI	AGCT	6 cut(s)	19, 145, 250, 317, 407, 413
AluI	AGCT	6 cut(s)	19, 145, 250, 317, 407, 413
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	164, 317
ApoI	RAATTY	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	242
BauI	CACGAG	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	151, 304
BfaI	CTAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	353
BisI	GCNGC	3 cut(s)	165, 318, 398
BlsI	GCNGC	3 cut(s)	166, 319, 399
Bme18I	GGWCC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	244
BmsI	GCATC	2 cut(s)	136, 352
Bpu10I	CCTNAGC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	102, 193, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	102, 193, 354
BseGI	GGATG	3 cut(s)	10, 112, 367
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	34, 428
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	151, 304
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	25, 86
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	3 cut(s)	193, 195, 397
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	33, 427
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	102, 193, 354
BssMI	GATC	2 cut(s)	25, 86
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	159
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	20, 323, 414
BstDSI	CCRYGG	2 cut(s)	193, 354
BstF5I	GGATG	3 cut(s)	10, 112, 367
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	2 cut(s)	28, 89
BstMBI	GATC	2 cut(s)	25, 86
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	151, 304
BsuRI	GGCC	1 cut(s)	218
BtgI	CCRYGG	2 cut(s)	193, 354
BtsCI	GGATG	3 cut(s)	10, 112, 367
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	418
Cfr42I	CCGCGG	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	148, 243
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	9 cut(s)	19, 50, 145, 218, 250, 317, 335, 407, 413
CviKI_1	RGCY	9 cut(s)	19, 50, 145, 218, 250, 317, 335, 407, 413
CviQI	GTAC	2 cut(s)	148, 243
DdeI	CTNAG	3 cut(s)	20, 323, 414
DpnI	GATC	2 cut(s)	27, 88
DpnII	GATC	2 cut(s)	25, 86
EaeI	YGGCCR	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	358
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	165, 318, 398
FokI	GGATG	3 cut(s)	17, 119, 374
Fsp4HI	GCNGC	3 cut(s)	165, 318, 398
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	3 cut(s)	165, 318, 398
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	219
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	6 cut(s)	23, 91, 106, 132, 256, 280
Hpy188III	TCNNGA	3 cut(s)	13, 139, 312
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	231, 382
HpyCH4V	TGCA	4 cut(s)	8, 291, 320, 330
HpyF3I	CTNAG	3 cut(s)	20, 323, 414
HpySE526I	ACGT	2 cut(s)	231, 382
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	1 cut(s)	350
KpnI	GGTACC	1 cut(s)	246
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	25, 86
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	7 cut(s)	14, 32, 54, 232, 250, 307, 401
Lsp1109I	GCAGC	2 cut(s)	151, 304
LweI	GCATC	2 cut(s)	136, 352
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	2 cut(s)	231, 382
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	27, 88
MboI	GATC	2 cut(s)	25, 86
MboII	GAAGA	1 cut(s)	269
MluCI	AATT	3 cut(s)	62, 116, 186
MnlI	CCTC	2 cut(s)	112, 352
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	399
MvnI	CGCG	1 cut(s)	195
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	2 cut(s)	25, 86
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	137
PctI	GAATGC	1 cut(s)	399
PkrI	GCNGC	3 cut(s)	166, 319, 399
Psp1406I	AACGTT	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	418
RsaI	GTAC	2 cut(s)	149, 244
RsaNI	GTAC	2 cut(s)	148, 243
SacII	CCGCGG	1 cut(s)	196
SatI	GCNGC	3 cut(s)	165, 318, 398
Sau3AI	GATC	2 cut(s)	25, 86
Sau96I	GGNCC	1 cut(s)	418
SfaNI	GCATC	2 cut(s)	136, 352
Sfr274I	CTCGAG	1 cut(s)	137
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	418
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	62, 116, 186
SsiI	CCGC	3 cut(s)	193, 195, 397
SspMI	CTAG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	2 cut(s)	234, 385
TaqI	TCGA	3 cut(s)	138, 311, 367
TasI	AATT	3 cut(s)	62, 116, 186
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	400
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	2 cut(s)	164, 317
TspDTI	ATGAA	2 cut(s)	123, 129
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	137
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.