Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

1488177 .. 1492359

Gene Structure 4183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1020600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTGCCTCGGATGAAAATGAATTTCAACAGCATCAGAAACTCGAGAAGCTGTACATATCAACTCGTGCTGCCAAGGTTGCTACGCTTATTTTTGTCTCATTACCAAAAGGAAATTGTCCGCGGAGTGGAAGGTTACATTGTGGCCGGTTCAAAGCACGTTGAAATAGGTACCAAGCTATCAGAAGATAGCAGGAAATATGGTTCTGAAAAGACTTGCACCGGTGGTAACACATTGTCGAGAGCTGCACTGAGTTTTGGAAGAGCTCGGGCCCAAATGGAAAGAGAGTGCGGAGTTCTACTGAAAGCCCTTGGCACACAGGTCACCGTTTGGAGTCACGAGCGTGGCAAATTCATGGCTCATTCGTTTGGCAAATTTGGTGAGAGTCAATTTGTTGCAGAGCCTTTAAGAGCAATGATAGTGGGAACACCCTTGGAGGATGCTCGACATCTAACTCAACGATATGCTAGAATGCGGCAAGAAGCTGAAGCTCAGGCTATAGATGTTTCCAGACGCCAGGCCAAAGTACGGGATTCTGCAGGTAATGCTGACATTATCATGAAACTAGAAGCTGCTGAAGCCAAGCTTCAGGAGCTGCAGTCTAGCGTTGCAATATTGGGAAAAGAAGCTAGTGCAGCTATGGCTGCTGTTGAAGGTCAACAACAAAGATTGACTCTTCAGCGGCTTCTTGCGATGGTTATTTACACCTTCCACGCTGTAACTGATGTGGAGTTAAGTTTGTCATTCGGGAATTACGTTGTCGTCCGGAAGGTATGTTCGTCAATGCATAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

266

Amino Acids

29.61

Weight (kDa)

9.82

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	530
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	765
AciI	CCGC	5 cut(s)	121, 123, 291, 475, 682
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	3 cut(s)	22, 350, 374
AcuI	CTGAAG	4 cut(s)	507, 572, 597, 662
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	3 cut(s)	55, 172, 528
AfiI	CCNNNNNNNGG	2 cut(s)	127, 528
AgeI	ACCGGT	1 cut(s)	221
AgsI	TTSAA	4 cut(s)	28, 153, 164, 653
AjnI	CCWGG	1 cut(s)	516
AleI	CACNNNNGTG	1 cut(s)	342
AloI	GAACNNNNNNTCC	4 cut(s)	187, 219, 760, 792
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	102
AlwNI	CAGNNNCTG	1 cut(s)	595
Ama87I	CYCGRG	2 cut(s)	43, 267
Aor13HI	TCCGGA	1 cut(s)	765
AoxI	GGCC	3 cut(s)	144, 270, 519
ApaI	GGGCCC	1 cut(s)	274
ApeKI	GCWGC	6 cut(s)	70, 245, 572, 595, 635, 644
ApoI	RAATTY	3 cut(s)	22, 350, 374
AsiGI	ACCGGT	1 cut(s)	221
Asp718I	GGTACC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	270, 271
AsuHPI	GGTGA	2 cut(s)	316, 392
AvaI	CYCGRG	2 cut(s)	43, 267
BaeGI	GKGCMC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	2 cut(s)	268, 274
BauI	CACGAG	2 cut(s)	65, 338
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	6 cut(s)	57, 232, 559, 582, 631, 647
BccI	CCATC	1 cut(s)	688
BciT130I	CCWGG	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	4 cut(s)	468, 566, 603, 630
BfmI	CTRYAG	3 cut(s)	498, 537, 596
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	8 cut(s)	71, 246, 476, 573, 596, 636, 645, 683
BlsI	GCNGC	8 cut(s)	72, 247, 477, 574, 597, 637, 646, 684
Bme1390I	CCNGG	1 cut(s)	518
BmeT110I	CYCGRG	2 cut(s)	43, 267
BmgT120I	GGNCC	2 cut(s)	270, 271
BmiI	GGNNCC	2 cut(s)	172, 272
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	42, 430
Bpu10I	CCTNAGC	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	5 cut(s)	8, 74, 121, 310, 432
BsaWI	WCCGGW	2 cut(s)	221, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 528
Bse118I	RCCGGY	2 cut(s)	146, 221
Bse3DI	GCAATG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	5 cut(s)	8, 74, 121, 310, 432
BseGI	GGATG	2 cut(s)	18, 445
BseLI	CCNNNNNNNGG	2 cut(s)	127, 528
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	242, 506
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	6 cut(s)	57, 232, 559, 582, 631, 647
BsgI	GTGCAG	2 cut(s)	231, 654
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	3 cut(s)	146, 272, 521
BshNI	GGYRCC	1 cut(s)	170
BshTI	ACCGGT	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	2 cut(s)	43, 267
BsiSI	CCGG	3 cut(s)	147, 222, 766
BslI	CCNNNNNNNGG	2 cut(s)	127, 528
BsmAI	GTCTC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	146, 272, 521
BsoBI	CYCGRG	2 cut(s)	43, 267
Bsp120I	GGGCCC	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	268, 274
Bsp13I	TCCGGA	1 cut(s)	765
Bsp1407I	TGTACA	1 cut(s)	53
BspACI	CCGC	5 cut(s)	121, 123, 291, 475, 682
BspANI	GGCC	3 cut(s)	146, 272, 521
BspCNI	CTCAG	2 cut(s)	243, 505
BspEI	TCCGGA	1 cut(s)	765
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	172, 272
BspMAI	CTGCAG	2 cut(s)	541, 600
BspMI	ACCTGC	1 cut(s)	530
BspQI	GCTCTTC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	2 cut(s)	146, 221
BsrGI	TGTACA	1 cut(s)	53
BssAI	RCCGGY	2 cut(s)	146, 221
BssECI	CCNNGG	5 cut(s)	8, 74, 121, 310, 432
BssNI	GRCGYC	1 cut(s)	514
BssSI	CACGAG	2 cut(s)	65, 338
BssT1I	CCWWGG	3 cut(s)	74, 310, 432
Bst2BI	CACGAG	2 cut(s)	65, 338
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	256, 681
BstACI	GRCGYC	1 cut(s)	514
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	251, 492
BstDSI	CCRYGG	1 cut(s)	121
BstEII	GGTNACC	1 cut(s)	322
BstF5I	GGATG	2 cut(s)	18, 445
BstFNI	CGCG	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	7 cut(s)	79, 545, 578, 592, 635, 641, 644
BstNI	CCWGG	1 cut(s)	518
BstPI	GGTNACC	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	516
BstSFI	CTRYAG	3 cut(s)	498, 537, 596
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	6 cut(s)	57, 232, 559, 582, 631, 647
BsuRI	GGCC	3 cut(s)	146, 272, 521
BtgI	CCRYGG	1 cut(s)	121
BtgZI	GCGATG	1 cut(s)	707
BtsCI	GGATG	2 cut(s)	18, 445
BtsIMutI	CAGTG	1 cut(s)	248
BveI	ACCTGC	1 cut(s)	530
CaiI	CAGNNNCTG	1 cut(s)	595
CciI	TCATGA	1 cut(s)	558
Cfr10I	RCCGGY	2 cut(s)	146, 221
Cfr13I	GGNCC	2 cut(s)	270, 271
Cfr42I	CCGCGG	1 cut(s)	124
CseI	GACGC	1 cut(s)	522
Csp6I	GTAC	3 cut(s)	54, 171, 527
CspAI	ACCGGT	1 cut(s)	221
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	2 cut(s)	355, 559
CviQI	GTAC	3 cut(s)	54, 171, 527
DdeI	CTNAG	2 cut(s)	251, 492
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	256, 681
EarI	CTCTTC	2 cut(s)	256, 681
Ecl136II	GAGCTC	1 cut(s)	266
Eco130I	CCWWGG	3 cut(s)	74, 310, 432
Eco24I	GRGCYC	2 cut(s)	268, 274
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	4 cut(s)	507, 572, 597, 662
Eco88I	CYCGRG	2 cut(s)	43, 267
Eco91I	GGTNACC	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	516
EcoT14I	CCWWGG	3 cut(s)	74, 310, 432
EcoT22I	ATGCAT	1 cut(s)	789
EcoT38I	GRGCYC	2 cut(s)	268, 274
ErhI	CCWWGG	3 cut(s)	74, 310, 432
FaeI	CATG	2 cut(s)	358, 562
FaiI	YATR	9 cut(s)	58, 201, 356, 465, 500, 560, 641, 775, 789
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FatI	CATG	2 cut(s)	354, 558
Fnu4HI	GCNGC	8 cut(s)	71, 246, 476, 573, 596, 636, 645, 683
FokI	GGATG	2 cut(s)	25, 452
FriOI	GRGCYC	2 cut(s)	268, 274
Fsp4HI	GCNGC	8 cut(s)	71, 246, 476, 573, 596, 636, 645, 683
FspBI	CTAG	4 cut(s)	468, 566, 603, 630
GluI	GCNGC	8 cut(s)	71, 246, 476, 573, 596, 636, 645, 683
HaeIII	GGCC	3 cut(s)	146, 272, 521
HapII	CCGG	3 cut(s)	147, 222, 766
HgaI	GACGC	1 cut(s)	522
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	2 cut(s)	358, 562
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	4 cut(s)	334, 385, 533, 673
HpaII	CCGG	3 cut(s)	147, 222, 766
HphI	GGTGA	2 cut(s)	316, 392
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	4 cut(s)	12, 38, 184, 208
Hpy188III	TCNNGA	8 cut(s)	45, 240, 338, 510, 559, 590, 748, 766
Hpy8I	GTNNAC	1 cut(s)	659
HpyAV	CCTTC	4 cut(s)	125, 647, 718, 763
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	159, 756
HpyCH4V	TGCA	8 cut(s)	219, 248, 398, 539, 598, 611, 635, 787
HpyF10VI	GCNNNNNNNGC	7 cut(s)	79, 545, 578, 592, 635, 641, 644
HpyF3I	CTNAG	2 cut(s)	251, 492
HpySE526I	ACGT	2 cut(s)	159, 756
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	2 cut(s)	358, 562
Kpn2I	TCCGGA	1 cut(s)	765
KpnI	GGTACC	1 cut(s)	174
KspI	CCGCGG	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	6 cut(s)	57, 232, 559, 582, 631, 647
LweI	GCATC	2 cut(s)	42, 430
MaeI	CTAG	4 cut(s)	468, 566, 603, 630
MaeII	ACGT	2 cut(s)	159, 756
MaeIII	GTNAC	5 cut(s)	134, 227, 322, 335, 718
MboII	GAAGA	3 cut(s)	197, 273, 668
MhlI	GDGCHC	2 cut(s)	268, 274
MluCI	AATT	6 cut(s)	22, 114, 350, 374, 389, 751
MlyI	GAGTC	3 cut(s)	343, 394, 667
MnlI	CCTC	2 cut(s)	18, 430
Mph1103I	ATGCAT	1 cut(s)	789
MroI	TCCGGA	1 cut(s)	765
MseI	TTAA	2 cut(s)	407, 734
MslI	CAYNNNNRTG	2 cut(s)	342, 557
MspA1I	CMGCKG	2 cut(s)	123, 682
MspI	CCGG	3 cut(s)	147, 222, 766
MspR9I	CCNGG	1 cut(s)	518
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	518
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	7 cut(s)	79, 545, 578, 592, 635, 641, 644
NlaIII	CATG	2 cut(s)	358, 562
NlaIV	GGNNCC	2 cut(s)	172, 272
NmuCI	GTSAC	2 cut(s)	322, 335
NsiI	ATGCAT	1 cut(s)	789
OliI	CACNNNNGTG	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	43
PagI	TCATGA	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	753
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	533
PinAI	ACCGGT	1 cut(s)	221
PkrI	GCNGC	8 cut(s)	72, 247, 477, 574, 597, 637, 646, 684
PleI	GAGTC	3 cut(s)	342, 393, 667
PpsI	GAGTC	3 cut(s)	342, 393, 667
Psp124BI	GAGCTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	516
PspEI	GGTNACC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	2 cut(s)	172, 272
PspOMI	GGGCCC	1 cut(s)	270
PspPI	GGNCC	2 cut(s)	270, 271
PstI	CTGCAG	2 cut(s)	541, 600
PstNI	CAGNNNCTG	1 cut(s)	595
RsaI	GTAC	3 cut(s)	55, 172, 528
RsaNI	GTAC	3 cut(s)	54, 171, 527
RseI	CAYNNNNRTG	2 cut(s)	342, 557
SacI	GAGCTC	1 cut(s)	268
SacII	CCGCGG	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	407, 734
SatI	GCNGC	8 cut(s)	71, 246, 476, 573, 596, 636, 645, 683
Sau96I	GGNCC	2 cut(s)	270, 271
SchI	GAGTC	3 cut(s)	343, 394, 667
ScrFI	CCNGG	1 cut(s)	518
SduI	GDGCHC	2 cut(s)	268, 274
SfaNI	GCATC	2 cut(s)	42, 430
SfcI	CTRYAG	3 cut(s)	498, 537, 596
Sfr274I	CTCGAG	1 cut(s)	43
Sfr303I	CCGCGG	1 cut(s)	124
SgrAI	CRCCGGYG	1 cut(s)	221
SgrBI	CCGCGG	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	43
SmiMI	CAYNNNNRTG	2 cut(s)	342, 557
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	6 cut(s)	22, 114, 350, 374, 389, 751
SsiI	CCGC	5 cut(s)	121, 123, 291, 475, 682
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	4 cut(s)	468, 566, 603, 630
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	516
StyI	CCWWGG	3 cut(s)	74, 310, 432
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	2 cut(s)	162, 759
TaqI	TCGA	3 cut(s)	44, 239, 445
TasI	AATT	6 cut(s)	22, 114, 350, 374, 389, 751
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	2 cut(s)	478, 685
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	2 cut(s)	407, 734
Tru9I	TTAA	2 cut(s)	407, 734
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	2 cut(s)	322, 335
TseI	GCWGC	6 cut(s)	70, 245, 572, 595, 635, 644
Tsp45I	GTSAC	2 cut(s)	322, 335
TspDTI	ATGAA	4 cut(s)	29, 35, 343, 575
TspRI	CASTG	1 cut(s)	255
XapI	RAATTY	3 cut(s)	22, 350, 374
XhoI	CTCGAG	1 cut(s)	43
XspI	CTAG	4 cut(s)	468, 566, 603, 630
Zsp2I	ATGCAT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.