Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454099.1

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Reverse (-)

30 .. 1744

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454099.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 641 bp

gttcggataatgttgtcgcggacgaaacagaactccaacagcatcagaagctcgagaagctgttcatatcaactcgtgccggcaagcattaccaaagggatattgtgcgtggtgtggaaagttatattgtaactggttcaaagctagttgaaataggtaccaagttatcagaagatagcaggaaatatggtgctgaaaaaacttgcaccactggtaacacattatcccgcgctgcactgagttttggaagagctcgtgcccagatggaaaaggagtgtggaattctattgaaagcccttggcacacaggttgcagagcctttaagagcgatggtagtgggtgcacccttggaggatgctcgacatcttgctcaacgatacagtagaatgcgacaagaagctgaagctcaggctattgatgtttccagacgccaagtcaaagtacgggaatccgcaggtaatatagatattatcatgaaactagaagctgctgaagccaaacttcaggagctaaagttcaatgttgcaatattgggaaaagaagctgctgcagcaatggcagctgtagaaggtcaacaacagaggttgactcttcagcgacttattgccatggtaattcattcacatctccttcctacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

212

Amino Acids

23.39

Weight (kDa)

9.25

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	445
Acc65I	GGTACC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	157
AccII	CGCG	2 cut(s)	19, 230
AciI	CCGC	3 cut(s)	19, 228, 452
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	4 cut(s)	422, 487, 512, 577
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	2 cut(s)	159, 443
AgsI	TTSAA	4 cut(s)	140, 151, 291, 519
AhdI	GACNNNNNGTC	1 cut(s)	433
AloI	GAACNNNNNNTCC	2 cut(s)	499, 531
Alw21I	GWGCWC	2 cut(s)	255, 345
Alw44I	GTGCAC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	52
ApaLI	GTGCAC	1 cut(s)	341
ApeKI	GCWGC	6 cut(s)	232, 487, 544, 547, 550, 559
ApoI	RAATTY	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	61
Asp718I	GGTACC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	52
BaeGI	GKGCMC	2 cut(s)	261, 345
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	2 cut(s)	74, 254
Bbv12I	GWGCWC	2 cut(s)	255, 345
BbvI	GCAGC	6 cut(s)	219, 474, 531, 534, 562, 571
BccI	CCATC	2 cut(s)	258, 324
BfaI	CTAG	2 cut(s)	145, 481
BfmI	CTRYAG	2 cut(s)	548, 563
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	6 cut(s)	233, 488, 545, 548, 551, 560
BlsI	GCNGC	6 cut(s)	234, 489, 546, 549, 552, 561
BmeRI	GACNNNNNGTC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	2 cut(s)	51, 345
BplI	GAGNNNNNCTC	2 cut(s)	573, 605
Bpu10I	CCTNAGC	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	297, 347, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	138, 216
Bse3DI	GCAATG	1 cut(s)	560
BseDI	CCNNGG	3 cut(s)	297, 347, 608
BseGI	GGATG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	2 cut(s)	229, 421
BseNI	ACTGG	2 cut(s)	138, 216
BseSI	GKGCMC	2 cut(s)	261, 345
BseXI	GCAGC	6 cut(s)	219, 474, 531, 534, 562, 571
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	2 cut(s)	19, 230
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	255, 345
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	3 cut(s)	255, 261, 345
Bsp19I	CCATGG	1 cut(s)	608
BspACI	CCGC	3 cut(s)	19, 228, 452
BspCNI	CTCAG	2 cut(s)	230, 420
BspFNI	CGCG	2 cut(s)	19, 230
BspHI	TCATGA	1 cut(s)	473
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	552
BspMI	ACCTGC	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	138, 216
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	297, 347, 608
BssNI	GRCGYC	1 cut(s)	429
BssSI	CACGAG	2 cut(s)	74, 254
BssT1I	CCWWGG	3 cut(s)	297, 347, 608
Bst2BI	CACGAG	2 cut(s)	74, 254
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	2 cut(s)	243, 596
BstACI	GRCGYC	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	81, 85
BstDEI	CTNAG	2 cut(s)	238, 407
BstDSI	CCRYGG	1 cut(s)	608
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	2 cut(s)	19, 230
BstHHI	GCGC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 57, 493, 550, 556, 559
BstSFI	CTRYAG	2 cut(s)	548, 563
BstSLI	GKGCMC	2 cut(s)	261, 345
BstUI	CGCG	2 cut(s)	19, 230
BstV1I	GCAGC	6 cut(s)	219, 474, 531, 534, 562, 571
BtgI	CCRYGG	1 cut(s)	608
BtgZI	GCGATG	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	209, 235
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	81, 85
CciI	TCATGA	1 cut(s)	473
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	79
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	2 cut(s)	158, 442
CviAII	CATG	2 cut(s)	474, 609
CviQI	GTAC	2 cut(s)	158, 442
DdeI	CTNAG	2 cut(s)	238, 407
DriI	GACNNNNNGTC	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	243, 596
Eam1105I	GACNNNNNGTC	1 cut(s)	433
EarI	CTCTTC	2 cut(s)	243, 596
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	3 cut(s)	297, 347, 608
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	4 cut(s)	422, 487, 512, 577
Eco88I	CYCGRG	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	281
EcoT14I	CCWWGG	3 cut(s)	297, 347, 608
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	3 cut(s)	297, 347, 608
FaeI	CATG	2 cut(s)	477, 612
FaiI	YATR	6 cut(s)	67, 125, 188, 463, 475, 610
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	2 cut(s)	473, 608
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	6 cut(s)	233, 488, 545, 548, 551, 560
FokI	GGATG	1 cut(s)	367
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	6 cut(s)	233, 488, 545, 548, 551, 560
FspBI	CTAG	2 cut(s)	145, 481
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	6 cut(s)	233, 488, 545, 548, 551, 560
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	477, 612
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	2 cut(s)	574, 587
HindII	GTYRAC	2 cut(s)	574, 587
HinfI	GANTC	2 cut(s)	448, 588
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	343, 574, 587
Hpy188I	TCNGA	3 cut(s)	6, 47, 171
Hpy188III	TCNNGA	4 cut(s)	54, 425, 474, 505
Hpy8I	GTNNAC	3 cut(s)	343, 574, 587
HpyAV	CCTTC	2 cut(s)	562, 640
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	6 cut(s)	206, 235, 313, 343, 526, 550
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 57, 493, 550, 556, 559
HpyF3I	CTNAG	2 cut(s)	238, 407
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	477, 612
HspAI	GCGC	1 cut(s)	230
KpnI	GGTACC	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	507
Lsp1109I	GCAGC	6 cut(s)	219, 474, 531, 534, 562, 571
LweI	GCATC	2 cut(s)	51, 345
MaeI	CTAG	2 cut(s)	145, 481
MaeIII	GTNAC	2 cut(s)	129, 214
MboII	GAAGA	3 cut(s)	184, 260, 583
MhlI	GDGCHC	3 cut(s)	255, 261, 345
MluCI	AATT	2 cut(s)	281, 614
MlyI	GAGTC	1 cut(s)	582
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	2 cut(s)	345, 575
MroNI	GCCGGC	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	392
MvnI	CGCG	2 cut(s)	19, 230
MwoI	GCNNNNNNNGC	6 cut(s)	48, 57, 493, 550, 556, 559
NaeI	GCCGGC	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	608
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	477, 612
NlaIV	GGNNCC	1 cut(s)	159
PaeR7I	CTCGAG	1 cut(s)	52
PagI	TCATGA	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	243
PctI	GAATGC	1 cut(s)	392
PdiI	GCCGGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	6 cut(s)	234, 489, 546, 549, 552, 561
PleI	GAGTC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	582
Psp124BI	GAGCTC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	552
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	2 cut(s)	159, 443
RsaNI	GTAC	2 cut(s)	158, 442
SacI	GAGCTC	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	6 cut(s)	233, 488, 545, 548, 551, 560
SchI	GAGTC	1 cut(s)	582
SduI	GDGCHC	3 cut(s)	255, 261, 345
SfaNI	GCATC	2 cut(s)	51, 345
SfcI	CTRYAG	2 cut(s)	548, 563
Sfr274I	CTCGAG	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	281, 614
SsiI	CCGC	3 cut(s)	19, 228, 452
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	2 cut(s)	145, 481
SstI	GAGCTC	1 cut(s)	255
StyI	CCWWGG	3 cut(s)	297, 347, 608
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	53, 360
TasI	AATT	2 cut(s)	281, 614
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TscAI	CASTG	2 cut(s)	216, 242
TseI	GCWGC	6 cut(s)	232, 487, 544, 547, 550, 559
TspDTI	ATGAA	3 cut(s)	54, 490, 607
TspRI	CASTG	2 cut(s)	216, 242
VneI	GTGCAC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	2 cut(s)	145, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.