Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

1415625 .. 1416566

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1018500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCGGCAAGAAGCTGAAGCTCAGAGAACGCAAAATCTTAAGATGTTTAATGTAAACTTGTTAAGATTGCTTTATTACTTGAAGCTTTGTTGTAATTTGGTTTTTGGTTTTTTTTTTATTACTCCTTCAGATTTGTCTATATATACTAACTTGCACCGGGATTCTGCAGGTAATGCTGACATTATCATGAAACTAGAAGCTGCTGAAGCCAAGCTTCAGGAGCTGCAGTCTACCGTTGCAATATTGGGAAAAGAAGCTAGTGCAGCTATGGCTGCTGTTGAAGGTCAACAACAAAGATTGACTCTTCAGCAGCTTCTTGCAATGGTGGAAGCAGAGCGCAACTATCATCGGAACGTTCTTCAGATACTTGATCAGCTTGAAGGCGAGATTTTGGCAGAAAAGCAGCAAATTGAAGCATCGCATAGTCCACCTACAGAGGACACTATGCCTCCACTACCATCGTATGAGGATCTCAGCCGTAGCTTTGCTTCTGAAACCTATGATGAATTGACAGAGTTGAGGGACTCTTTCTTTGGAGGGGTATCTTTATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

185

Amino Acids

20.77

Weight (kDa)

4.69

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	1 cut(s)	4
AclI	AACGTT	1 cut(s)	354
AclWI	GGATC	1 cut(s)	477
AcuI	CTGAAG	6 cut(s)	36, 111, 200, 225, 290, 344
AflII	CTTAAG	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	82, 281, 380, 413
AlwI	GGATC	1 cut(s)	477
AlwNI	CAGNNNCTG	1 cut(s)	223
ApeKI	GCWGC	6 cut(s)	200, 223, 263, 272, 310, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspLEI	GCGC	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	158
BarI	GAAGNNNNNNTAC	2 cut(s)	472, 504
BbvI	GCAGC	6 cut(s)	187, 210, 259, 275, 322, 415
BccI	CCATC	1 cut(s)	466
BceAI	ACGGC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	158
BfaI	CTAG	2 cut(s)	194, 258
BfmI	CTRYAG	3 cut(s)	165, 224, 432
BfrI	CTTAAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	7 cut(s)	5, 201, 224, 264, 273, 311, 404
BlsI	GCNGC	7 cut(s)	6, 202, 225, 265, 274, 312, 405
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	158
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 433, 463
Bse3DI	GCAATG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	35, 487
BseXI	GCAGC	6 cut(s)	187, 210, 259, 275, 322, 415
BsgI	GTGCAG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	536
Bsp143I	GATC	2 cut(s)	370, 469
BspACI	CCGC	1 cut(s)	4
BspCNI	CTCAG	2 cut(s)	34, 486
BspHI	TCATGA	1 cut(s)	186
BspMAI	CTGCAG	2 cut(s)	169, 228
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	477
BspTI	CTTAAG	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	327
BssMI	GATC	2 cut(s)	370, 469
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	309
BstAFI	CTTAAG	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstDEI	CTNAG	2 cut(s)	21, 473
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	373, 472
BstMBI	GATC	2 cut(s)	370, 469
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 206, 220, 263, 269, 272
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	3 cut(s)	165, 224, 432
BstV1I	GCAGC	6 cut(s)	187, 210, 259, 275, 322, 415
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BtgZI	GCGATG	1 cut(s)	402
BveI	ACCTGC	1 cut(s)	158
CaiI	CAGNNNCTG	1 cut(s)	223
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	1 cut(s)	339
CviAII	CATG	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	21, 473
DpnI	GATC	2 cut(s)	372, 471
DpnII	GATC	2 cut(s)	370, 469
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco57I	CTGAAG	6 cut(s)	36, 111, 200, 225, 290, 344
FaeI	CATG	1 cut(s)	190
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	7 cut(s)	5, 201, 224, 264, 273, 311, 404
Fsp4HI	GCNGC	7 cut(s)	5, 201, 224, 264, 273, 311, 404
FspBI	CTAG	2 cut(s)	194, 258
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	7 cut(s)	5, 201, 224, 264, 273, 311, 404
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	287
HindII	GTYRAC	1 cut(s)	287
HindIII	AAGCTT	2 cut(s)	83, 212
HinfI	GANTC	3 cut(s)	161, 301, 524
HpaII	CCGG	1 cut(s)	157
Hpy166II	GTNNAC	4 cut(s)	55, 231, 287, 428
Hpy188I	TCNGA	5 cut(s)	24, 130, 351, 363, 493
Hpy188III	TCNNGA	2 cut(s)	187, 218
Hpy8I	GTNNAC	4 cut(s)	55, 231, 287, 428
HpyAV	CCTTC	3 cut(s)	135, 275, 374
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	6 cut(s)	154, 167, 226, 239, 263, 320
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 206, 220, 263, 269, 272
HpyF3I	CTNAG	2 cut(s)	21, 473
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	370, 469
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	3 cut(s)	153, 170, 203
Lsp1109I	GCAGC	6 cut(s)	187, 210, 259, 275, 322, 415
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	2 cut(s)	194, 258
MaeII	ACGT	1 cut(s)	354
MalI	GATC	2 cut(s)	372, 471
MboI	GATC	2 cut(s)	370, 469
MboII	GAAGA	2 cut(s)	296, 350
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	3 cut(s)	94, 408, 506
MlyI	GAGTC	2 cut(s)	295, 518
MnlI	CCTC	5 cut(s)	430, 459, 460, 513, 530
MseI	TTAA	3 cut(s)	39, 48, 62
MslI	CAYNNNNRTG	1 cut(s)	185
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	6 cut(s)	173, 206, 220, 263, 269, 272
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	2 cut(s)	370, 469
NlaIII	CATG	1 cut(s)	190
PagI	TCATGA	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	7 cut(s)	6, 202, 225, 265, 274, 312, 405
PleI	GAGTC	2 cut(s)	295, 518
PpsI	GAGTC	2 cut(s)	295, 518
Psp1406I	AACGTT	1 cut(s)	354
PstI	CTGCAG	2 cut(s)	169, 228
PstNI	CAGNNNCTG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	39, 48, 62
SatI	GCNGC	7 cut(s)	5, 201, 224, 264, 273, 311, 404
Sau3AI	GATC	2 cut(s)	370, 469
SchI	GAGTC	2 cut(s)	295, 518
ScrFI	CCNGG	1 cut(s)	158
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	3 cut(s)	165, 224, 432
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	94, 408, 506
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	2 cut(s)	194, 258
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	357
TasI	AATT	3 cut(s)	94, 408, 506
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	3 cut(s)	39, 48, 62
Tru9I	TTAA	3 cut(s)	39, 48, 62
TseI	GCWGC	6 cut(s)	200, 223, 263, 272, 310, 403
TspDTI	ATGAA	2 cut(s)	203, 519
Vha464I	CTTAAG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	2 cut(s)	194, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.