Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

1444568 .. 1445821

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1019500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGATGCAATCCGGAAGCTCAGAGATCAGGTCGCCAAGCAACAGCAGGCCGTGTTCAAACAATTTTCTGGTGGCATATATGGGGGATCGGATAATGTTGCCTCGGATGAAAATGAATTTCAACAGCATCAGAAACTCGAGAAGCTGTACATATCAACTCGTGCTGCCAAGCATTACCAAAAGGAAATTGTCCGCGGAGTGGAAGGTTACATTGTGGCCGGTTCAAAGCACGTTGAAATAGGTACGAAGCTATCAGAAGATAGCAGGAAATATGGTTCTGAAAAGACTTGCACCAGTGGTAACACATTGTCGAGAGCTGCACTGAGTTTTGGAAGAGCTCGGGCCCAAATGGAAAAAGAGTGCGGAGTTCTACTTAAAGCCCTTGGCACACAGGTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

134

Amino Acids

14.66

Weight (kDa)

9.39

Isoelectric Point (pI)

28.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	12
AciI	CCGC	3 cut(s)	193, 195, 363
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	2 cut(s)	149, 244
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	58, 122, 225, 236
AloI	GAACNNNNNNTCC	2 cut(s)	259, 291
AluBI	AGCT	5 cut(s)	19, 145, 250, 317, 338
AluI	AGCT	5 cut(s)	19, 145, 250, 317, 338
Alw21I	GWGCWC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	2 cut(s)	137, 339
Aor13HI	TCCGGA	1 cut(s)	12
AoxI	GGCC	3 cut(s)	48, 216, 342
ApaI	GGGCCC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	164, 317
ApoI	RAATTY	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	342, 343
AvaI	CYCGRG	2 cut(s)	137, 339
BaeGI	GKGCMC	1 cut(s)	346
BanII	GRGCYC	2 cut(s)	340, 346
BauI	CACGAG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	151, 304
BceAI	ACGGC	1 cut(s)	35
BisI	GCNGC	2 cut(s)	165, 318
BlsI	GCNGC	2 cut(s)	166, 319
BmeT110I	CYCGRG	2 cut(s)	137, 339
BmgT120I	GGNCC	2 cut(s)	342, 343
BmiI	GGNNCC	1 cut(s)	344
BmsI	GCATC	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	102, 193, 382
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	294
BseAI	TCCGGA	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	102, 193, 382
BseGI	GGATG	2 cut(s)	10, 112
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	34, 314
BseNI	ACTGG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	151, 304
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	50, 218, 344
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	2 cut(s)	137, 339
BsiSI	CCGG	2 cut(s)	13, 219
BslI	CCNNNNNNNGG	1 cut(s)	199
BsnI	GGCC	3 cut(s)	50, 218, 344
BsoBI	CYCGRG	2 cut(s)	137, 339
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	340, 346
Bsp13I	TCCGGA	1 cut(s)	12
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	25, 86
BspACI	CCGC	3 cut(s)	193, 195, 363
BspANI	GGCC	3 cut(s)	50, 218, 344
BspCNI	CTCAG	2 cut(s)	33, 315
BspEI	TCCGGA	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	102, 193, 382
BssMI	GATC	2 cut(s)	25, 86
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	382
Bst2BI	CACGAG	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	328
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	20, 323
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	10, 112
BstFNI	CGCG	1 cut(s)	195
BstKTI	GATC	2 cut(s)	28, 89
BstMBI	GATC	2 cut(s)	25, 86
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	151, 304
BsuRI	GGCC	3 cut(s)	50, 218, 344
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	10, 112
BtsIMutI	CAGTG	2 cut(s)	301, 320
Cac8I	GCNNGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	342, 343
Cfr42I	CCGCGG	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	148, 243
CviJI	RGCY	9 cut(s)	19, 50, 145, 218, 250, 317, 338, 344, 380
CviKI_1	RGCY	9 cut(s)	19, 50, 145, 218, 250, 317, 338, 344, 380
CviQI	GTAC	2 cut(s)	148, 243
DdeI	CTNAG	2 cut(s)	20, 323
DpnI	GATC	2 cut(s)	27, 88
DpnII	GATC	2 cut(s)	25, 86
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	2 cut(s)	340, 346
Eco53kI	GAGCTC	1 cut(s)	338
Eco88I	CYCGRG	2 cut(s)	137, 339
EcoICRI	GAGCTC	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	2 cut(s)	340, 346
ErhI	CCWWGG	1 cut(s)	382
FaiI	YATR	6 cut(s)	77, 79, 81, 152, 273, 400
Fnu4HI	GCNGC	2 cut(s)	165, 318
FokI	GGATG	2 cut(s)	17, 119
FriOI	GRGCYC	2 cut(s)	340, 346
Fsp4HI	GCNGC	2 cut(s)	165, 318
GluI	GCNGC	2 cut(s)	165, 318
HaeIII	GGCC	3 cut(s)	50, 218, 344
HapII	CCGG	2 cut(s)	13, 219
HpaII	CCGG	2 cut(s)	13, 219
Hpy188I	TCNGA	6 cut(s)	23, 91, 106, 132, 256, 280
Hpy188III	TCNNGA	3 cut(s)	13, 139, 312
HpyAV	CCTTC	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	8, 291, 320, 398
HpyF3I	CTNAG	2 cut(s)	20, 323
HpySE526I	ACGT	1 cut(s)	231
Kpn2I	TCCGGA	1 cut(s)	12
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	25, 86
LguI	GCTCTTC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	14, 26, 32, 54, 232, 250, 307, 377
Lsp1109I	GCAGC	2 cut(s)	151, 304
LweI	GCATC	1 cut(s)	136
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	206, 299
MalI	GATC	2 cut(s)	27, 88
MboI	GATC	2 cut(s)	25, 86
MboII	GAAGA	2 cut(s)	269, 345
MhlI	GDGCHC	2 cut(s)	340, 346
MluCI	AATT	3 cut(s)	62, 116, 186
MnlI	CCTC	1 cut(s)	112
MroI	TCCGGA	1 cut(s)	12
MseI	TTAA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	2 cut(s)	13, 219
MvnI	CGCG	1 cut(s)	195
NdeII	GATC	2 cut(s)	25, 86
NlaIV	GGNNCC	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	166, 319
Psp124BI	GAGCTC	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	344
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	342, 343
RsaI	GTAC	2 cut(s)	149, 244
RsaNI	GTAC	2 cut(s)	148, 243
SacI	GAGCTC	1 cut(s)	340
SacII	CCGCGG	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	2 cut(s)	165, 318
Sau3AI	GATC	2 cut(s)	25, 86
Sau96I	GGNCC	2 cut(s)	342, 343
SduI	GDGCHC	2 cut(s)	340, 346
SfaNI	GCATC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	137
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	62, 116, 186
SsiI	CCGC	3 cut(s)	193, 195, 363
SstI	GAGCTC	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	382
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	138, 311
TasI	AATT	3 cut(s)	62, 116, 186
TatI	WGTACW	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	301, 327
TseI	GCWGC	2 cut(s)	164, 317
TspDTI	ATGAA	2 cut(s)	123, 129
TspRI	CASTG	2 cut(s)	301, 327
XapI	RAATTY	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.