Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

1224571 .. 1226860

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01650.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGGCAATCAGGAAGCTCAGAGATCAGGTCGCCAAGCAACAGCAGGCTGTGTTCAAACAATTTTCTGGTGGCATATATGGGGGATCGGATAATGTTGCCTCGGATGAAAATGAATTTCAACAGCATCAGAAACTCGAGAAGCTGTACATATCAACTCGTGCTGCCAAGCATTACCAAAAGGAAATTGTCCGCGGAGTGGAAGGTTACATTGTGGCCGGTTCAAAGCACGTTGAAATAGGTACCAAGCTATCTGAAGATAGCAGGAAATATGGTTCTGAAAAGACTTGCACCAGTGGTAACACACTGTCGAGAGCTGCACTGAGTTTTGGAAGAGCTCGGGCCCAAATGGAAAGAGAGTGCGGAGTTCTACTTAAAGCCCTTGGCACACAGGTTGCAGAGCCTTTAAGAGCAATGATAGTGGGAGCGCCCTTGGAGGATGCTAGACATCTTGCTCAACGATATGCTAGAATGCGGCAAGAAGCTGAAGCTCAGGCTATAGATGTTTCCAGACGCCAGGCCAAAGTACGGGATTCTGCAGCTAATGCTGATATTATCATGAAACTAGAAGCTGCTGAAGCCAAGCTTCAGGAGCTGCAGTCTAGCGTTGCAATATTGGGAAAAGAAGCTAGTGCAGCTATGGCTGCTGTTGAAGGTCAACAACAAAGATTGACTCTTCAGCGGCTTCTTGCGATGATACTTGATCAGCTTGAAGGCGAGATTTTGTCAGAAAAGCAGCGAATTGAAGCATCACCTAGTCCGCCTACAGAGGACACTATGCCTCCGCCACCATCGTATGAGGATCGATCAGCCGTAGCTTTGCTTCTGAAACGTATGATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

282

Amino Acids

31.0

Weight (kDa)

8.74

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccII	CGCG	1 cut(s)	195
AciI	CCGC	7 cut(s)	193, 195, 363, 475, 682, 761, 785
AclWI	GGATC	2 cut(s)	94, 810
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	5 cut(s)	276, 507, 572, 597, 662
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	3 cut(s)	149, 244, 528
AfiI	CCNNNNNNNGG	2 cut(s)	199, 528
AgsI	TTSAA	7 cut(s)	58, 122, 225, 236, 653, 713, 746
AjnI	CCWGG	1 cut(s)	516
AloI	GAACNNNNNNTCC	2 cut(s)	259, 291
Alw21I	GWGCWC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	94, 810
AlwNI	CAGNNNCTG	1 cut(s)	595
Ama87I	CYCGRG	2 cut(s)	137, 339
AoxI	GGCC	3 cut(s)	216, 342, 519
ApaI	GGGCCC	1 cut(s)	346
ApeKI	GCWGC	8 cut(s)	164, 317, 539, 572, 595, 635, 644, 736
ApoI	RAATTY	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	342, 343
AsuHPI	GGTGA	1 cut(s)	744
AvaI	CYCGRG	2 cut(s)	137, 339
BaeGI	GKGCMC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	340, 346
BarI	GAAGNNNNNNTAC	2 cut(s)	807, 839
BauI	CACGAG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	8 cut(s)	151, 304, 551, 559, 582, 631, 647, 748
BccI	CCATC	1 cut(s)	799
BceAI	ACGGC	1 cut(s)	797
BciT130I	CCWGG	1 cut(s)	518
BclI	TGATCA	1 cut(s)	703
BfaI	CTAG	6 cut(s)	444, 468, 566, 603, 630, 756
BfmI	CTRYAG	4 cut(s)	498, 537, 596, 765
BfoI	RGCGCY	1 cut(s)	431
Bme1390I	CCNGG	1 cut(s)	518
BmeT110I	CYCGRG	2 cut(s)	137, 339
BmgT120I	GGNCC	2 cut(s)	342, 343
BmiI	GGNNCC	2 cut(s)	244, 344
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	3 cut(s)	136, 430, 758
Bpu10I	CCTNAGC	1 cut(s)	492
Bsa29I	ATCGAT	1 cut(s)	805
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	4 cut(s)	102, 193, 382, 432
BsaXI	ACNNNNNCTCC	4 cut(s)	584, 614, 766, 796
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 528
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	518
BseCI	ATCGAT	1 cut(s)	805
BseDI	CCNNGG	4 cut(s)	102, 193, 382, 432
BseGI	GGATG	2 cut(s)	112, 445
BseLI	CCNNNNNNNGG	2 cut(s)	199, 528
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	3 cut(s)	34, 314, 506
BseNI	ACTGG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	8 cut(s)	151, 304, 551, 559, 582, 631, 647, 748
BsgI	GTGCAG	2 cut(s)	303, 654
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	218, 344, 521
BshNI	GGYRCC	1 cut(s)	242
BshVI	ATCGAT	1 cut(s)	805
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	2 cut(s)	137, 339
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	199, 528
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	218, 344, 521
BsoBI	CYCGRG	2 cut(s)	137, 339
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	340, 346
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	5 cut(s)	25, 86, 703, 802, 806
BspACI	CCGC	7 cut(s)	193, 195, 363, 475, 682, 761, 785
BspANI	GGCC	3 cut(s)	218, 344, 521
BspCNI	CTCAG	3 cut(s)	33, 315, 505
BspDI	ATCGAT	1 cut(s)	805
BspFNI	CGCG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	244, 344
BspMAI	CTGCAG	2 cut(s)	541, 600
BspPI	GGATC	2 cut(s)	94, 810
BspQI	GCTCTTC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	4 cut(s)	102, 193, 382, 432
BssMI	GATC	5 cut(s)	25, 86, 703, 802, 806
BssNI	GRCGYC	1 cut(s)	514
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	2 cut(s)	382, 432
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	2 cut(s)	328, 681
BstACI	GRCGYC	1 cut(s)	514
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	20, 323, 492
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	112, 445
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	5 cut(s)	28, 89, 706, 805, 809
BstMBI	GATC	5 cut(s)	25, 86, 703, 802, 806
BstMWI	GCNNNNNNNGC	6 cut(s)	545, 578, 592, 635, 641, 644
BstNI	CCWGG	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	516
BstSFI	CTRYAG	4 cut(s)	498, 537, 596, 765
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	8 cut(s)	151, 304, 551, 559, 582, 631, 647, 748
Bsu15I	ATCGAT	1 cut(s)	805
BsuRI	GGCC	3 cut(s)	218, 344, 521
BsuTUI	ATCGAT	1 cut(s)	805
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	707
BtsCI	GGATG	2 cut(s)	112, 445
BtsIMutI	CAGTG	3 cut(s)	301, 305, 320
Cac8I	GCNNGC	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	595
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	342, 343
Cfr42I	CCGCGG	1 cut(s)	196
ClaI	ATCGAT	1 cut(s)	805
CseI	GACGC	1 cut(s)	522
Csp6I	GTAC	3 cut(s)	148, 243, 527
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	1 cut(s)	559
CviQI	GTAC	3 cut(s)	148, 243, 527
DdeI	CTNAG	3 cut(s)	20, 323, 492
DpnI	GATC	5 cut(s)	27, 88, 705, 804, 808
DpnII	GATC	5 cut(s)	25, 86, 703, 802, 806
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	328, 681
EarI	CTCTTC	2 cut(s)	328, 681
EciI	GGCGGA	2 cut(s)	750, 774
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	382, 432
Eco24I	GRGCYC	2 cut(s)	340, 346
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	5 cut(s)	276, 507, 572, 597, 662
Eco88I	CYCGRG	2 cut(s)	137, 339
EcoICRI	GAGCTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	516
EcoT14I	CCWWGG	2 cut(s)	382, 432
EcoT38I	GRGCYC	2 cut(s)	340, 346
ErhI	CCWWGG	2 cut(s)	382, 432
FaeI	CATG	1 cut(s)	562
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FatI	CATG	1 cut(s)	558
FbaI	TGATCA	1 cut(s)	703
FokI	GGATG	2 cut(s)	119, 452
FriOI	GRGCYC	2 cut(s)	340, 346
FspBI	CTAG	6 cut(s)	444, 468, 566, 603, 630, 756
GlaI	GCGC	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	3 cut(s)	218, 344, 521
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	522
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	1 cut(s)	562
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	2 cut(s)	533, 673
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	744
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	8 cut(s)	23, 91, 106, 132, 256, 280, 730, 828
Hpy188III	TCNNGA	6 cut(s)	13, 139, 312, 510, 559, 590
Hpy8I	GTNNAC	1 cut(s)	659
HpyAV	CCTTC	3 cut(s)	197, 647, 707
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4IV	ACGT	2 cut(s)	231, 832
HpyCH4V	TGCA	7 cut(s)	291, 320, 398, 539, 598, 611, 635
HpyF10VI	GCNNNNNNNGC	6 cut(s)	545, 578, 592, 635, 641, 644
HpyF3I	CTNAG	3 cut(s)	20, 323, 492
HpySE526I	ACGT	2 cut(s)	231, 832
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	1 cut(s)	562
HspAI	GCGC	1 cut(s)	428
KpnI	GGTACC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	703
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	5 cut(s)	25, 86, 703, 802, 806
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	425, 592
Lsp1109I	GCAGC	8 cut(s)	151, 304, 551, 559, 582, 631, 647, 748
LweI	GCATC	3 cut(s)	136, 430, 758
MaeI	CTAG	6 cut(s)	444, 468, 566, 603, 630, 756
MaeII	ACGT	2 cut(s)	231, 832
MaeIII	GTNAC	2 cut(s)	206, 299
MalI	GATC	5 cut(s)	27, 88, 705, 804, 808
MboI	GATC	5 cut(s)	25, 86, 703, 802, 806
MboII	GAAGA	3 cut(s)	269, 345, 668
MhlI	GDGCHC	2 cut(s)	340, 346
MluCI	AATT	5 cut(s)	62, 116, 186, 741, 841
MlyI	GAGTC	1 cut(s)	667
MnlI	CCTC	5 cut(s)	112, 430, 763, 792, 793
MseI	TTAA	2 cut(s)	375, 407
MspA1I	CMGCKG	2 cut(s)	195, 682
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	518
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	518
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	6 cut(s)	545, 578, 592, 635, 641, 644
NdeII	GATC	5 cut(s)	25, 86, 703, 802, 806
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	2 cut(s)	244, 344
PaeR7I	CTCGAG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	328
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	533
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	2 cut(s)	244, 344
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	342, 343
PstI	CTGCAG	2 cut(s)	541, 600
PstNI	CAGNNNCTG	1 cut(s)	595
RsaI	GTAC	3 cut(s)	149, 244, 528
RsaNI	GTAC	3 cut(s)	148, 243, 527
SacI	GAGCTC	1 cut(s)	340
SacII	CCGCGG	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	375, 407
Sau3AI	GATC	5 cut(s)	25, 86, 703, 802, 806
Sau96I	GGNCC	2 cut(s)	342, 343
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	1 cut(s)	518
SduI	GDGCHC	2 cut(s)	340, 346
SfaNI	GCATC	3 cut(s)	136, 430, 758
SfcI	CTRYAG	4 cut(s)	498, 537, 596, 765
Sfr274I	CTCGAG	1 cut(s)	137
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	5 cut(s)	62, 116, 186, 741, 841
SsiI	CCGC	7 cut(s)	193, 195, 363, 475, 682, 761, 785
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	6 cut(s)	444, 468, 566, 603, 630, 756
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	516
StyI	CCWWGG	2 cut(s)	382, 432
TaaI	ACNGT	1 cut(s)	309
TaiI	ACGT	2 cut(s)	234, 835
TaqI	TCGA	3 cut(s)	138, 311, 805
TasI	AATT	5 cut(s)	62, 116, 186, 741, 841
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	478, 685
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	2 cut(s)	375, 407
Tru9I	TTAA	2 cut(s)	375, 407
TscAI	CASTG	3 cut(s)	301, 312, 327
TseI	GCWGC	8 cut(s)	164, 317, 539, 572, 595, 635, 644, 736
TspDTI	ATGAA	3 cut(s)	123, 129, 575
TspRI	CASTG	3 cut(s)	301, 312, 327
XapI	RAATTY	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	137
XspI	CTAG	6 cut(s)	444, 468, 566, 603, 630, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.