Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

1010414 .. 1013309

Gene Structure 2896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1017700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGGCAATCAGGAAGCTCAGAGATCAGGTCGCCAAGCAACAGCAGGCTGTATTCAAACAATTTTCTGGTGGCATATTTGGGGGATCGGATAATGTTGCCGCAGATGAAAATGAATTCCAACAGCATCAGAAAATCGAGAAGTTGTACATATCAACTCGTGCTGCCAAGCATTACCAAAAGGAAATCGTCCGTGGTGTGGAAGGTTATGTTGTTGCTGGTTCAAAGCAAGTTGAAATAGGTACCAAATTATCAGAAGATAGCAGGAAATATGGTGCTGAAAAAACTTGCACCAGTGGTAACACATTGTCGAGAGCTGCACTGAGTTTTGGAAGAGCCCGTGCCCAAATGGAAAAGGAGCGTGGACTTCTACTGAAAGCTCTTGGCACGCAGGTTGCAGAGCCTTTGAGAGCAATGGTAATGGGAGCGCCCTTGGAGGATGCTCGACATCTTGCTCAACGATATGCTAGAATGCGGCAAGATGCTGAAGCTCAGGCTATAGATGTTTCCAGACGCCAAGCCAAAGTACGGGAATCTGCAGGTAATGCTGATATTATCATGAAACTAGAAGCTGCTGAAGCCAAGCTTCAGGAGCTACAGTCTAACGTTGCAATATTGGGAAAAGAAGCTGGTGCAGCAATGGCTGCTGTTGAAGGTCAACAACAAAGATTGACTCTTCAGCGGCTTCTTGTGATGGTTGAAGCAGAGCGCAATTATCATCAGAACGTTCTTCAGATACTTGACCAGCTTGAAGGCGAGATGTTGTCAGAAAACCAGCGAATTGAAGCATCGCCTAGTCCAGCTACAGAGACATCTATGCCTCCGCCACAATCATATGAGGATCTGGGACATAGCTTTGCTTCTGAAGCCTATGATGAATTGACAGACACAAGGGACTATTTCTTAGGAGAGGTTGTGTACACATTTCAAGCTGTAACTGATGTGGAGTTAAGCTTGTCTTTTGGGGATTATGTCGTTGTCCGGAAGGTATCAAATAATGGTTGGGCTGAAGGTGAATGCAAGGGAAAAGCCGGGTGGTTTCCATTTAATTACATCGAAATGCGGGACCGTGCGCTTGCGAGCAAGGTGGCTGCAGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

368

Amino Acids

40.71

Weight (kDa)

5.76

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_9	PF14604	305 - 353	3.8e-10	Variant SH3 domain
SH3_1	PF00018	306 - 348	9.7e-08	SH3 domain
SH3_2	PF07653	316 - 353	4.1e-07	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	382, 530
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	981
AciI	CCGC	5 cut(s)	102, 475, 682, 824, 1063
AclI	AACGTT	2 cut(s)	606, 726
AclWI	GGATC	2 cut(s)	94, 849
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	7 cut(s)	507, 572, 597, 662, 716, 885, 1029
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	4 cut(s)	149, 244, 528, 920
AfiI	CCNNNNNNNGG	2 cut(s)	199, 528
AgsI	TTSAA	8 cut(s)	58, 225, 236, 653, 701, 752, 785, 929
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	2 cut(s)	94, 849
Aor13HI	TCCGGA	1 cut(s)	981
ApeKI	GCWGC	6 cut(s)	164, 317, 572, 635, 644, 1091
ApoI	RAATTY	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	3 cut(s)	430, 711, 1075
AspS9I	GGNCC	1 cut(s)	1066
AsuC2I	CCSGG	1 cut(s)	1033
AsuHPI	GGTGA	1 cut(s)	1025
AvaII	GGWCC	1 cut(s)	1066
BaeGI	GKGCMC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	340
BauI	CACGAG	1 cut(s)	159
BbvI	GCAGC	6 cut(s)	151, 304, 559, 631, 647, 1078
BccI	CCATC	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	1033
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	3 cut(s)	468, 566, 795
BfmI	CTRYAG	5 cut(s)	498, 537, 596, 804, 1092
BfoI	RGCGCY	1 cut(s)	431
BfuAI	ACCTGC	2 cut(s)	382, 530
BisI	GCNGC	9 cut(s)	102, 165, 318, 476, 573, 636, 645, 683, 1092
BlsI	GCNGC	9 cut(s)	103, 166, 319, 477, 574, 637, 646, 684, 1093
Bme1390I	CCNGG	1 cut(s)	1033
Bme18I	GGWCC	1 cut(s)	1066
BmgT120I	GGNCC	1 cut(s)	1066
BmiI	GGNNCC	2 cut(s)	244, 1067
BmrFI	CCNGG	1 cut(s)	1033
BmsI	GCATC	4 cut(s)	136, 430, 472, 797
Bpu10I	CCTNAGC	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	1033
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	2 cut(s)	193, 432
BsaWI	WCCGGW	1 cut(s)	981
BsaXI	ACNNNNNCTCC	4 cut(s)	584, 614, 900, 930
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 528
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	2 cut(s)	420, 645
BseAI	TCCGGA	1 cut(s)	981
BseDI	CCNNGG	2 cut(s)	193, 432
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	2 cut(s)	199, 528
BseMI	GCAATG	2 cut(s)	420, 645
BseMII	CTCAG	3 cut(s)	34, 314, 506
BseNI	ACTGG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	6 cut(s)	151, 304, 559, 631, 647, 1078
BsgI	GTGCAG	2 cut(s)	303, 654
BshNI	GGYRCC	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	982, 1032
BslFI	GGGAC	3 cut(s)	861, 908, 1079
BslI	CCNNNNNNNGG	2 cut(s)	199, 528
BsmAI	GTCTC	1 cut(s)	803
BsmFI	GGGAC	3 cut(s)	861, 908, 1079
BsmI	GAATGC	2 cut(s)	477, 1022
Bsp1286I	GDGCHC	2 cut(s)	340, 346
Bsp13I	TCCGGA	1 cut(s)	981
Bsp1407I	TGTACA	2 cut(s)	147, 918
Bsp143I	GATC	3 cut(s)	25, 86, 841
BspACI	CCGC	5 cut(s)	102, 475, 682, 824, 1063
BspCNI	CTCAG	3 cut(s)	33, 315, 505
BspEI	TCCGGA	1 cut(s)	981
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	244, 1067
BspMAI	CTGCAG	2 cut(s)	541, 1096
BspMI	ACCTGC	2 cut(s)	382, 530
BspPI	GGATC	2 cut(s)	94, 849
BspQI	GCTCTTC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	2 cut(s)	420, 645
BsrGI	TGTACA	2 cut(s)	147, 918
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	2 cut(s)	193, 432
BssMI	GATC	3 cut(s)	25, 86, 841
BssNI	GRCGYC	1 cut(s)	514
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	600, 1070
Bst6I	CTCTTC	2 cut(s)	328, 681
BstACI	GRCGYC	1 cut(s)	514
BstAPI	GCANNNNNTGC	2 cut(s)	545, 644
BstAUI	TGTACA	2 cut(s)	147, 918
BstC8I	GCNNGC	4 cut(s)	48, 389, 1077, 1081
BstDEI	CTNAG	4 cut(s)	20, 323, 492, 904
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	3 cut(s)	430, 711, 1075
BstKTI	GATC	3 cut(s)	28, 89, 844
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	3 cut(s)	25, 86, 841
BstMWI	GCNNNNNNNGC	7 cut(s)	545, 578, 592, 635, 641, 644, 866
BstSCI	CCNGG	1 cut(s)	1031
BstSFI	CTRYAG	5 cut(s)	498, 537, 596, 804, 1092
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	6 cut(s)	151, 304, 559, 631, 647, 1078
BstX2I	RGATCY	1 cut(s)	841
BstYI	RGATCY	1 cut(s)	841
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	774
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	301, 320
BveI	ACCTGC	2 cut(s)	382, 530
Cac8I	GCNNGC	4 cut(s)	48, 389, 1077, 1081
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	3 cut(s)	430, 711, 1075
Cfr13I	GGNCC	1 cut(s)	1066
CseI	GACGC	1 cut(s)	522
Csp6I	GTAC	4 cut(s)	148, 243, 527, 919
CviAII	CATG	1 cut(s)	559
CviQI	GTAC	4 cut(s)	148, 243, 527, 919
DdeI	CTNAG	4 cut(s)	20, 323, 492, 904
DpnI	GATC	3 cut(s)	27, 88, 843
DpnII	GATC	3 cut(s)	25, 86, 841
Eam1104I	CTCTTC	2 cut(s)	328, 681
EarI	CTCTTC	2 cut(s)	328, 681
EciI	GGCGGA	1 cut(s)	813
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	1066
Eco57I	CTGAAG	7 cut(s)	507, 572, 597, 662, 716, 885, 1029
EcoRI	GAATTC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	1 cut(s)	562
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 943, 975
FaqI	GGGAC	3 cut(s)	861, 908, 1079
FatI	CATG	1 cut(s)	558
FauI	CCCGC	1 cut(s)	1056
FauNDI	CATATG	1 cut(s)	835
Fnu4HI	GCNGC	9 cut(s)	102, 165, 318, 476, 573, 636, 645, 683, 1092
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	9 cut(s)	102, 165, 318, 476, 573, 636, 645, 683, 1092
FspBI	CTAG	3 cut(s)	468, 566, 795
GlaI	GCGC	3 cut(s)	429, 710, 1074
GluI	GCNGC	9 cut(s)	102, 165, 318, 476, 573, 636, 645, 683, 1092
HaeII	RGCGCY	1 cut(s)	431
HapII	CCGG	2 cut(s)	982, 1032
HgaI	GACGC	1 cut(s)	522
HhaI	GCGC	3 cut(s)	430, 711, 1075
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	1 cut(s)	562
Hin6I	GCGC	3 cut(s)	428, 709, 1073
HinP1I	GCGC	3 cut(s)	428, 709, 1073
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HindIII	AAGCTT	2 cut(s)	584, 952
HinfI	GANTC	2 cut(s)	533, 673
HpaII	CCGG	2 cut(s)	982, 1032
HphI	GGTGA	1 cut(s)	1025
Hpy166II	GTNNAC	4 cut(s)	365, 659, 919, 921
Hpy188I	TCNGA	8 cut(s)	23, 91, 132, 256, 723, 735, 769, 865
Hpy188III	TCNNGA	7 cut(s)	13, 139, 312, 510, 559, 590, 982
Hpy8I	GTNNAC	4 cut(s)	365, 659, 919, 921
HpyAV	CCTTC	5 cut(s)	197, 647, 746, 979, 1004
HpyCH4III	ACNGT	2 cut(s)	600, 1070
HpyCH4IV	ACGT	2 cut(s)	606, 726
HpyCH4V	TGCA	8 cut(s)	291, 320, 398, 539, 611, 635, 1020, 1094
HpyF10VI	GCNNNNNNNGC	7 cut(s)	545, 578, 592, 635, 641, 644, 866
HpyF3I	CTNAG	4 cut(s)	20, 323, 492, 904
HpySE526I	ACGT	2 cut(s)	606, 726
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	1 cut(s)	562
HspAI	GCGC	3 cut(s)	428, 709, 1073
Kpn2I	TCCGGA	1 cut(s)	981
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	25, 86, 841
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	358, 425, 592
Lsp1109I	GCAGC	6 cut(s)	151, 304, 559, 631, 647, 1078
LweI	GCATC	4 cut(s)	136, 430, 472, 797
MaeI	CTAG	3 cut(s)	468, 566, 795
MaeII	ACGT	2 cut(s)	606, 726
MaeIII	GTNAC	2 cut(s)	299, 934
MalI	GATC	3 cut(s)	27, 88, 843
MboI	GATC	3 cut(s)	25, 86, 841
MboII	GAAGA	4 cut(s)	269, 345, 668, 722
MflI	RGATCY	1 cut(s)	841
MhlI	GDGCHC	2 cut(s)	340, 346
MluCI	AATT	7 cut(s)	62, 116, 248, 712, 780, 878, 1048
MlyI	GAGTC	1 cut(s)	667
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	430, 831, 832, 904
MroI	TCCGGA	1 cut(s)	981
MseI	TTAA	3 cut(s)	950, 1047, 1102
MslI	CAYNNNNRTG	1 cut(s)	1058
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	2 cut(s)	982, 1032
MspR9I	CCNGG	1 cut(s)	1033
Mva1269I	GAATGC	2 cut(s)	477, 1022
MwoI	GCNNNNNNNGC	7 cut(s)	545, 578, 592, 635, 641, 644, 866
NciI	CCSGG	1 cut(s)	1033
NdeI	CATATG	1 cut(s)	835
NdeII	GATC	3 cut(s)	25, 86, 841
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	2 cut(s)	244, 1067
PagI	TCATGA	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	328
PctI	GAATGC	2 cut(s)	477, 1022
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	9 cut(s)	103, 166, 319, 477, 574, 637, 646, 684, 1093
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
Psp1406I	AACGTT	2 cut(s)	606, 726
PspN4I	GGNNCC	2 cut(s)	244, 1067
PspPI	GGNCC	1 cut(s)	1066
PstI	CTGCAG	2 cut(s)	541, 1096
PsuI	RGATCY	1 cut(s)	841
RsaI	GTAC	4 cut(s)	149, 244, 528, 920
RsaNI	GTAC	4 cut(s)	148, 243, 527, 919
RseI	CAYNNNNRTG	1 cut(s)	1058
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	3 cut(s)	950, 1047, 1102
SatI	GCNGC	9 cut(s)	102, 165, 318, 476, 573, 636, 645, 683, 1092
Sau3AI	GATC	3 cut(s)	25, 86, 841
Sau96I	GGNCC	1 cut(s)	1066
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	1 cut(s)	1033
SduI	GDGCHC	2 cut(s)	340, 346
SfaNI	GCATC	4 cut(s)	136, 430, 472, 797
SfcI	CTRYAG	5 cut(s)	498, 537, 596, 804, 1092
SinI	GGWCC	1 cut(s)	1066
SmiMI	CAYNNNNRTG	1 cut(s)	1058
Sse9I	AATT	7 cut(s)	62, 116, 248, 712, 780, 878, 1048
SsiI	CCGC	5 cut(s)	102, 475, 682, 824, 1063
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	3 cut(s)	468, 566, 795
StyD4I	CCNGG	1 cut(s)	1031
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	600, 1070
TaiI	ACGT	2 cut(s)	609, 729
TaqI	TCGA	4 cut(s)	138, 311, 445, 1056
TasI	AATT	7 cut(s)	62, 116, 248, 712, 780, 878, 1048
TatI	WGTACW	2 cut(s)	147, 918
TauI	GCSGC	3 cut(s)	104, 478, 685
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	3 cut(s)	950, 1047, 1102
Tru9I	TTAA	3 cut(s)	950, 1047, 1102
TscAI	CASTG	2 cut(s)	301, 327
TseI	GCWGC	6 cut(s)	164, 317, 572, 635, 644, 1091
TspDTI	ATGAA	4 cut(s)	123, 129, 575, 891
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	301, 327
VpaK11BI	GGWCC	1 cut(s)	1066
XapI	RAATTY	1 cut(s)	116
XspI	CTAG	3 cut(s)	468, 566, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.