Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008638

Physical Location & Seq

Genomic Coordinates Reverse (-)

16833933 .. 16835619

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATCAAGCAAAGGGAAAAGTCTGTGTTACTGGTGCTTCAGGCTTCTTGGCTTCTTGGCTTGTAAAGAGGCTTCTACTTGAAGGATATGAAGTTATCGGAACAGTCAGAGATCCAGGAAATGAGAAGAAACTTGCGCACCTATGGAAGTTGGAAGGGGCAAAGGAGAGACTACGGTTGGTGAAGGCTGATTTAATGGAAGAAGGAAGTTTTGATAACGCCATAATGGGATGCCAAGGAGTGTTCCATACTGCTTCTCCGGTGCTTAAACCTACCTCTAATCCAGAGGAGGAGATTCTGAGACCAGCTATAGAAGGAACCCTGAATGTACTGCGATCATGCAGGAAGAATCCTTCCCTGAAGCGCGTGGTTCTCACCTCATCCTCTTCAACAGTCAGGATCAGAGATGATTTTGATCCCAAAATCCCTCTTGACGAATCAATTTGGACGTCTGTGGAACTCTGCAAGCGCTTCCAGGTCTGGTATGCCTTATCAAAGACATTAGCGGAACAAGCTGCATGGAAATTCTCTGAAGAAAATGGTATTGACCTCGTCACTGTTCTACCATCCTTCCTCGTTGGACCCAGTCTGCCTCCTGATTTATGTTCTACAGCTTCCGATGTCCTCGGATTACTGAAAGGAGAAACAGAGAAGTTCCAATGGCATGGACAAATGGGGTATGTTCATATCGATGACGTTGCACGAACCCACATAGTCGTTTTCGAACACGAAGCAGCTCAAGGCAGATACATTTGTAGCTCTAACGTTATCAGTCTAGAGGAACTCGTTTCATTCCTATCTGCTCGTTACCCATCACTCCCTATCCCCAAGAGGTTTGAGAAACTAAATAGGTTGCATTACGACTTTGACACCTCGAAGATACAGAGTCTCGGGCTCAAGTTCAAGTCCCTTGAAGAGATGTTCGATGACTGCATTGCCTCATTAGTCGAGCAAGGCTATTTATCTACTGTTCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009653 GO:0009791 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016043 GO:0019438 GO:0022414 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0080110 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase UFD1

Protein Analysis

326

Amino Acids

36.46

Weight (kDa)

5.88

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 86	3e-06	NmrA-like family
Epimerase	PF01370	8 - 246	5.1e-27	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	10 - 187	2.8e-14	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	10 - 264	5.3e-13	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	10 - 198	1.3e-12	Male sterility protein
NAD_binding_10	PF13460	12 - 132	1.9e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35420
fragaria_vesca	FvH4_2g17230
malus_domestica	MD05G1145800.v1.1 MD05G1148800.v1.1 MD05G1148900.v1.1 MD10G1145200.v1.1 MD10G1145300.v1.1
prunus_persica	Prupe.8G183600_v2.0.a1 Prupe.8G183600_v2.0.a1
pyrus_communis	pycom05g14050 pycom10g12510 pycom10g12520
rosa_chinensis	RchiOBHm_Chr6g0281711
rosa_laevigata	RLG00000012944 RLG00000012947
rosa_multiflora	Rmu_sc0037975.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186890
rosa_rugosa	Rorug06G0142700
rosa_samantha	Rh6AG255700 Rh6BG258800 Rh6CG257700 Rh6DG249800
rosa_wichuraiana	Rw6G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	452
Acc16I	TGCGCA	1 cut(s)	138
AccII	CGCG	1 cut(s)	366
AciI	CCGC	1 cut(s)	506
AclI	AACGTT	1 cut(s)	765
AclWI	GGATC	4 cut(s)	12, 107, 407, 410
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	3 cut(s)	24, 380, 552
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	1 cut(s)	330
AfeI	AGCGCT	1 cut(s)	470
AgsI	TTSAA	4 cut(s)	83, 390, 904, 914
AjnI	CCWGG	2 cut(s)	115, 474
AluBI	AGCT	5 cut(s)	308, 515, 614, 737, 759
AluI	AGCT	5 cut(s)	308, 515, 614, 737, 759
Alw26I	GTCTC	3 cut(s)	163, 295, 893
AlwI	GGATC	4 cut(s)	12, 107, 407, 410
Ama87I	CYCGRG	1 cut(s)	890
Aor51HI	AGCGCT	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	515, 734
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	3 cut(s)	139, 366, 471
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	193, 367
AsuII	TTCGAA	1 cut(s)	723
AvaI	CYCGRG	1 cut(s)	890
AvaII	GGWCC	1 cut(s)	581
BaeI	ACNNNNGTAYC	2 cut(s)	739, 772
BanII	GRGCYC	1 cut(s)	897
BarI	GAAGNNNNNNTAC	2 cut(s)	57, 89
BbvI	GCAGC	2 cut(s)	502, 746
BccI	CCATC	2 cut(s)	574, 820
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BciT130I	CCWGG	2 cut(s)	117, 476
BcoDI	GTCTC	3 cut(s)	163, 295, 893
BfaI	CTAG	1 cut(s)	776
BfmI	CTRYAG	2 cut(s)	309, 609
BfoI	RGCGCY	1 cut(s)	472
BisI	GCNGC	2 cut(s)	516, 735
BlsI	GCNGC	2 cut(s)	517, 736
Bme1390I	CCNGG	2 cut(s)	117, 476
Bme18I	GGWCC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	890
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	2 cut(s)	319, 583
BmrFI	CCNGG	2 cut(s)	117, 476
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	723
BpuEI	CTTGAG	2 cut(s)	723, 881
Bsa29I	ATCGAT	1 cut(s)	690
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	235, 625
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bse1I	ACTGG	2 cut(s)	37, 585
Bse3DI	GCAATG	1 cut(s)	933
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	117, 476
BseCI	ATCGAT	1 cut(s)	690
BseDI	CCNNGG	2 cut(s)	235, 625
BseGI	GGATG	3 cut(s)	236, 380, 566
BseJI	GATNNNNATC	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	37, 585
BseRI	GAGGAG	2 cut(s)	302, 305
BseXI	GCAGC	2 cut(s)	502, 746
Bsh1236I	CGCG	1 cut(s)	366
BshVI	ATCGAT	1 cut(s)	690
BsiHKCI	CYCGRG	1 cut(s)	890
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	892
BsmAI	GTCTC	3 cut(s)	163, 295, 893
BsmFI	GGGAC	1 cut(s)	892
Bso31I	GGTCTC	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	890
Bsp119I	TTCGAA	1 cut(s)	723
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	5 cut(s)	4, 112, 335, 399, 415
BspACI	CCGC	1 cut(s)	506
BspCNI	CTCAG	1 cut(s)	291
BspDI	ATCGAT	1 cut(s)	690
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	319, 583
BspPI	GGATC	4 cut(s)	12, 107, 407, 410
BspT104I	TTCGAA	1 cut(s)	723
BspTNI	GGTCTC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	933
BsrI	ACTGG	2 cut(s)	37, 585
BssECI	CCNNGG	2 cut(s)	235, 625
BssMI	GATC	5 cut(s)	4, 112, 335, 399, 415
BssNI	GRCGYC	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	117, 476
Bst4CI	ACNGT	5 cut(s)	106, 177, 394, 559, 970
Bst6I	CTCTTC	2 cut(s)	391, 909
BstACI	GRCGYC	1 cut(s)	449
BstBI	TTCGAA	1 cut(s)	723
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	1 cut(s)	299
BstF5I	GGATG	3 cut(s)	236, 380, 566
BstFNI	CGCG	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	3 cut(s)	139, 366, 471
BstKTI	GATC	5 cut(s)	7, 115, 338, 402, 418
BstMAI	GTCTC	3 cut(s)	163, 295, 893
BstMBI	GATC	5 cut(s)	4, 112, 335, 399, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	2 cut(s)	117, 476
BstSCI	CCNGG	2 cut(s)	115, 474
BstSFI	CTRYAG	2 cut(s)	309, 609
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	502, 746
BstX2I	RGATCY	1 cut(s)	112
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	690
BsuTUI	ATCGAT	1 cut(s)	690
BtsCI	GGATG	3 cut(s)	236, 380, 566
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	1 cut(s)	467
CfoI	GCGC	3 cut(s)	139, 366, 471
Cfr13I	GGNCC	1 cut(s)	581
ClaI	ATCGAT	1 cut(s)	690
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	3 cut(s)	339, 519, 665
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	5 cut(s)	6, 114, 337, 401, 417
DpnII	GATC	5 cut(s)	4, 112, 335, 399, 415
Eam1104I	CTCTTC	2 cut(s)	391, 909
EarI	CTCTTC	2 cut(s)	391, 909
Eco130I	CCWWGG	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	897
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	581
Eco47III	AGCGCT	1 cut(s)	470
Eco57I	CTGAAG	3 cut(s)	24, 380, 552
Eco88I	CYCGRG	1 cut(s)	890
EcoRII	CCWGG	2 cut(s)	115, 474
EcoT14I	CCWWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	897
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	3 cut(s)	342, 522, 668
FaqI	GGGAC	1 cut(s)	892
FatI	CATG	3 cut(s)	338, 518, 664
Fnu4HI	GCNGC	2 cut(s)	516, 735
FokI	GGATG	3 cut(s)	243, 367, 553
FriOI	GRGCYC	1 cut(s)	897
Fsp4HI	GCNGC	2 cut(s)	516, 735
FspBI	CTAG	1 cut(s)	776
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	3 cut(s)	138, 365, 470
GluI	GCNGC	2 cut(s)	516, 735
HaeII	RGCGCY	1 cut(s)	472
HapII	CCGG	1 cut(s)	260
HhaI	GCGC	3 cut(s)	139, 366, 471
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	3 cut(s)	342, 522, 668
Hin6I	GCGC	3 cut(s)	137, 364, 469
HinP1I	GCGC	3 cut(s)	137, 364, 469
HinfI	GANTC	4 cut(s)	295, 349, 437, 886
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	2 cut(s)	193, 367
Hpy188I	TCNGA	7 cut(s)	101, 110, 300, 404, 532, 619, 629
Hpy188III	TCNNGA	5 cut(s)	284, 397, 431, 596, 776
HpyAV	CCTTC	7 cut(s)	77, 149, 178, 197, 308, 363, 580
HpyCH4III	ACNGT	5 cut(s)	106, 177, 394, 559, 970
HpyCH4IV	ACGT	3 cut(s)	449, 696, 765
HpyCH4V	TGCA	6 cut(s)	342, 465, 518, 701, 856, 933
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	3 cut(s)	449, 696, 765
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	3 cut(s)	342, 522, 668
HspAI	GCGC	3 cut(s)	137, 364, 469
Kzo9I	GATC	5 cut(s)	4, 112, 335, 399, 415
Lsp1109I	GCAGC	2 cut(s)	502, 746
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	776
MaeII	ACGT	3 cut(s)	449, 696, 765
MaeIII	GTNAC	3 cut(s)	28, 553, 806
MalI	GATC	5 cut(s)	6, 114, 337, 401, 417
MboI	GATC	5 cut(s)	4, 112, 335, 399, 415
MboII	GAAGA	8 cut(s)	139, 212, 358, 378, 545, 889, 926, 965
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	2 cut(s)	441, 524
MlyI	GAGTC	1 cut(s)	895
MmeI	TCCRAC	2 cut(s)	132, 559
MseI	TTAA	2 cut(s)	194, 267
MslI	CAYNNNNRTG	1 cut(s)	690
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	117, 476
MvaI	CCWGG	2 cut(s)	117, 476
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	5 cut(s)	4, 112, 335, 399, 415
NlaIII	CATG	3 cut(s)	342, 522, 668
NlaIV	GGNNCC	2 cut(s)	319, 583
NmuCI	GTSAC	1 cut(s)	553
NsbI	TGCGCA	1 cut(s)	138
NspV	TTCGAA	1 cut(s)	723
PfeI	GAWTC	3 cut(s)	295, 349, 437
PflFI	GACNNNGTC	2 cut(s)	551, 585
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	517, 736
PleI	GAGTC	1 cut(s)	894
PpsI	GAGTC	1 cut(s)	894
Psp1406I	AACGTT	1 cut(s)	765
Psp6I	CCWGG	2 cut(s)	115, 474
PspGI	CCWGG	2 cut(s)	115, 474
PspN4I	GGNNCC	2 cut(s)	319, 583
PspPI	GGNCC	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	112
PsyI	GACNNNGTC	2 cut(s)	551, 585
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	194, 267
SatI	GCNGC	2 cut(s)	516, 735
Sau3AI	GATC	5 cut(s)	4, 112, 335, 399, 415
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	1 cut(s)	895
ScrFI	CCNGG	2 cut(s)	117, 476
SduI	GDGCHC	1 cut(s)	897
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	2 cut(s)	309, 609
SfuI	TTCGAA	1 cut(s)	723
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	690
SmlI	CTYRAG	2 cut(s)	738, 896
SmoI	CTYRAG	2 cut(s)	738, 896
Sse9I	AATT	2 cut(s)	441, 524
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	1 cut(s)	776
StyD4I	CCNGG	2 cut(s)	115, 474
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	5 cut(s)	106, 177, 394, 559, 970
TaiI	ACGT	3 cut(s)	452, 699, 768
TaqI	TCGA	5 cut(s)	690, 723, 875, 924, 948
TasI	AATT	2 cut(s)	441, 524
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	3 cut(s)	295, 349, 437
Tru1I	TTAA	2 cut(s)	194, 267
Tru9I	TTAA	2 cut(s)	194, 267
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	2 cut(s)	515, 734
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	3 cut(s)	105, 674, 780
TspRI	CASTG	1 cut(s)	562
Tth111I	GACNNNGTC	2 cut(s)	551, 585
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	1 cut(s)	524
XbaI	TCTAGA	1 cut(s)	775
XspI	CTAG	1 cut(s)	776
ZraI	GACGTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.