Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008638

Physical Location & Seq

Genomic Coordinates Reverse (-)

28019872 .. 28021618

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1148900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATCGAAAACTCGATTCGAAAGGCAAAGTTTGCGTTACGGGGGCTTTTGGATTTATGGCATCCTGGCTTATAAAGCGGCTTCTCTTGTCCGACTATCATGTAACGGGGACTGTAAGAGATCCAGGAAACGAGAAGAAATTGGCACATTTGTGGAGGCTAGAAGGAGCTAAGGAAAGACTAAGATTGGTGACGGCAGATTTGATGGAAGAAGGCAGCTTTGATGATGCAATTTTTGGGTGCCATGGCACAGAAATCCTGGAACCGCCTGTTGAGGGCACATTGAACGTGTTGCGTTCGTGTAAGAAAAATCCGTCTCTAAGGAGCGTGGTTCTCACCTCATATTCTGCAGCTGTAAGGGTGAGACCAGATGGGGATTTCACCTCCAATGTACCTCTGGGTGACTCTTCAGGTCTAGTTAACAATACTCTCCCTCTGTCCTTGTTAAGGATTTTGCCTTGGTACAGATTGTTTGCTAACTGCAGTATTTGGTACCCTATGTCGAAAATTTTAGCTGAGAAAGCAGGATGGGATTTCTGCAAAGAAAATGCGATTGATATGGTTACTGTCCTACCCTCCTTCGTGATCGGGCCTTGTTTGCCACCTGAGTTGTGTTCTACAGCATCAGATGTTCTTGGCCTGCTTAAAGGGGAAACAGAGAAATTTAAGTGGAATGGAAGGATGGGATATGTTCACATTGATGATGTTGCACTCTGTCACATCTTAGTTTATGAGCATGAAAGTGCTCATGGCAGATGTATTTGTAGCTCAACAGTTATGGACAACACTGAGTTAGGTTCCTTATTATCTACAAGATATCCTTCCTTGCCTATCCCCACAAGGTTTGAGCAACTAGGGAGGCCACGTTATTATGAGTTGAACACCTCAAAGCTGGGGAGAGGGTTCAAGTTTAAGAGTATCCAAGAGATGTTTGATGATTGCATTGCCTCTTTGGTGGAGCAAGGCCATCTTCCTGCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase UFD1

Protein Analysis

328

Amino Acids

36.45

Weight (kDa)

6.71

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35420
fragaria_vesca	FvH4_2g17230
malus_domestica	MD05G1145800.v1.1 MD05G1148800.v1.1 MD05G1148900.v1.1 MD10G1145200.v1.1 MD10G1145300.v1.1
prunus_persica	Prupe.8G183600_v2.0.a1 Prupe.8G183600_v2.0.a1
pyrus_communis	pycom05g14050 pycom10g12510 pycom10g12520
rosa_chinensis	RchiOBHm_Chr6g0281711
rosa_laevigata	RLG00000012944 RLG00000012947
rosa_multiflora	Rmu_sc0037975.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186890
rosa_rugosa	Rorug06G0142700
rosa_samantha	Rh6AG255700 Rh6BG258800 Rh6CG257700 Rh6DG249800
rosa_wichuraiana	Rw6G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	492
AccB1I	GGYRCC	2 cut(s)	240, 492
AciI	CCGC	2 cut(s)	79, 266
AclWI	GGATC	2 cut(s)	12, 116
AcsI	RAATTY	2 cut(s)	507, 662
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	3 cut(s)	393, 464, 494
AfiI	CCNNNNNNNGG	2 cut(s)	275, 447
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	286, 880, 907
AjnI	CCWGG	3 cut(s)	65, 124, 258
AleI	CACNNNNGTG	1 cut(s)	151
AluBI	AGCT	6 cut(s)	170, 219, 353, 515, 768, 892
AluI	AGCT	6 cut(s)	170, 219, 353, 515, 768, 892
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	2 cut(s)	321, 358
AlwI	GGATC	2 cut(s)	12, 116
AoxI	GGCC	4 cut(s)	590, 637, 860, 964
ApeKI	GCWGC	2 cut(s)	216, 350
ApoI	RAATTY	2 cut(s)	507, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
Asp718I	GGTACC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	5 cut(s)	202, 328, 373, 373, 413
AsuII	TTCGAA	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	2 cut(s)	240, 492
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	2 cut(s)	228, 362
BccI	CCATC	5 cut(s)	199, 365, 522, 676, 975
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	3 cut(s)	67, 126, 260
BciVI	GTATCC	1 cut(s)	929
BcoDI	GTCTC	2 cut(s)	321, 358
BfaI	CTAG	3 cut(s)	161, 416, 854
BfmI	CTRYAG	3 cut(s)	348, 481, 618
BfuI	GTATCC	1 cut(s)	929
BisI	GCNGC	3 cut(s)	80, 217, 351
BlsI	GCNGC	3 cut(s)	81, 218, 352
Bme1390I	CCNGG	3 cut(s)	67, 126, 260
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	4 cut(s)	242, 264, 494, 799
BmrFI	CCNGG	3 cut(s)	67, 126, 260
BmsI	GCATC	3 cut(s)	71, 217, 632
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	244, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	850, 880
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 447
Bse3DI	GCAATG	1 cut(s)	942
BseBI	CCWGG	3 cut(s)	67, 126, 260
BseDI	CCNNGG	2 cut(s)	244, 458
BseGI	GGATG	3 cut(s)	62, 533, 687
BseLI	CCNNNNNNNGG	2 cut(s)	275, 447
BseMI	GCAATG	1 cut(s)	942
BseMII	CTCAG	3 cut(s)	507, 597, 780
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	228, 362
BseYI	CCCAGC	1 cut(s)	892
BshFI	GGCC	4 cut(s)	592, 639, 862, 966
BshNI	GGYRCC	2 cut(s)	240, 492
BsiHKAI	GWGCWC	1 cut(s)	748
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	275, 447
BsmAI	GTCTC	2 cut(s)	321, 358
BsmBI	CGTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	4 cut(s)	592, 639, 862, 966
Bso31I	GGTCTC	1 cut(s)	358
Bsp119I	TTCGAA	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	281, 748
Bsp143I	GATC	3 cut(s)	4, 121, 585
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	2 cut(s)	79, 266
BspANI	GGCC	4 cut(s)	592, 639, 862, 966
BspCNI	CTCAG	3 cut(s)	508, 598, 781
BspLI	GGNNCC	4 cut(s)	242, 264, 494, 799
BspMAI	CTGCAG	2 cut(s)	352, 485
BspPI	GGATC	2 cut(s)	12, 116
BspT104I	TTCGAA	1 cut(s)	20
BspT107I	GGYRCC	2 cut(s)	240, 492
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	942
BssECI	CCNNGG	2 cut(s)	244, 458
BssMI	GATC	3 cut(s)	4, 121, 585
BssT1I	CCWWGG	2 cut(s)	244, 458
Bst2UI	CCWGG	3 cut(s)	67, 126, 260
Bst4CI	ACNGT	3 cut(s)	115, 568, 775
Bst6I	CTCTTC	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	7 cut(s)	171, 182, 320, 516, 606, 724, 789
BstDSI	CCRYGG	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	445
BstF5I	GGATG	3 cut(s)	62, 533, 687
BstKTI	GATC	3 cut(s)	7, 124, 588
BstMAI	GTCTC	2 cut(s)	321, 358
BstMBI	GATC	3 cut(s)	4, 121, 585
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 76, 521, 598
BstNI	CCWGG	3 cut(s)	67, 126, 260
BstSCI	CCNGG	3 cut(s)	65, 124, 258
BstSFI	CTRYAG	3 cut(s)	348, 481, 618
BstSLI	GKGCMC	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	228, 362
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	929
BsuRI	GGCC	4 cut(s)	592, 639, 862, 966
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	62, 533, 687
BtsIMutI	CAGTG	1 cut(s)	786
Cac8I	GCNNGC	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	590
Csp6I	GTAC	3 cut(s)	392, 463, 493
CspCI	CAANNNNNGTGG	4 cut(s)	591, 626, 826, 861
CviAII	CATG	4 cut(s)	101, 245, 737, 749
CviQI	GTAC	3 cut(s)	392, 463, 493
DdeI	CTNAG	7 cut(s)	171, 182, 320, 516, 606, 724, 789
DpnI	GATC	3 cut(s)	6, 123, 587
DpnII	GATC	3 cut(s)	4, 121, 585
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	244, 458
Eco31I	GGTCTC	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	818
Eco57I	CTGAAG	1 cut(s)	393
EcoNI	CCTNNNNNAGG	1 cut(s)	445
EcoRII	CCWGG	3 cut(s)	65, 124, 258
EcoRV	GATATC	1 cut(s)	818
EcoT14I	CCWWGG	2 cut(s)	244, 458
ErhI	CCWWGG	2 cut(s)	244, 458
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	4 cut(s)	104, 248, 740, 752
FalI	AAGNNNNNCTT	3 cut(s)	805, 837, 954
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	4 cut(s)	100, 244, 736, 748
Fnu4HI	GCNGC	3 cut(s)	80, 217, 351
FokI	GGATG	3 cut(s)	49, 540, 694
Fsp4HI	GCNGC	3 cut(s)	80, 217, 351
FspBI	CTAG	3 cut(s)	161, 416, 854
GluI	GCNGC	3 cut(s)	80, 217, 351
GsaI	CCCAGC	1 cut(s)	896
HaeIII	GGCC	4 cut(s)	592, 639, 862, 966
Hin1II	CATG	4 cut(s)	104, 248, 740, 752
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	17, 404
HpaI	GTTAAC	1 cut(s)	421
HphI	GGTGA	5 cut(s)	202, 328, 373, 373, 413
Hpy166II	GTNNAC	2 cut(s)	421, 694
Hpy188I	TCNGA	2 cut(s)	94, 628
Hpy188III	TCNNGA	1 cut(s)	583
Hpy8I	GTNNAC	2 cut(s)	421, 694
HpyAV	CCTTC	5 cut(s)	158, 206, 589, 672, 831
HpyCH4III	ACNGT	3 cut(s)	115, 568, 775
HpyCH4IV	ACGT	2 cut(s)	288, 865
HpyCH4V	TGCA	7 cut(s)	230, 350, 483, 540, 710, 942, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 76, 521, 598
HpyF3I	CTNAG	7 cut(s)	171, 182, 320, 516, 606, 724, 789
HpySE526I	ACGT	2 cut(s)	288, 865
Hsp92II	CATG	4 cut(s)	104, 248, 740, 752
KpnI	GGTACC	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	4, 121, 585
LmnI	GCTCC	3 cut(s)	167, 324, 958
Lsp1109I	GCAGC	2 cut(s)	228, 362
LweI	GCATC	3 cut(s)	71, 217, 632
MaeI	CTAG	3 cut(s)	161, 416, 854
MaeII	ACGT	2 cut(s)	288, 865
MaeIII	GTNAC	6 cut(s)	37, 103, 190, 401, 562, 716
MalI	GATC	3 cut(s)	6, 123, 587
MboI	GATC	3 cut(s)	4, 121, 585
MboII	GAAGA	4 cut(s)	148, 221, 399, 962
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	281, 748
MluCI	AATT	4 cut(s)	140, 231, 507, 662
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	117
MseI	TTAA	5 cut(s)	420, 446, 645, 666, 912
MslI	CAYNNNNRTG	3 cut(s)	151, 699, 741
MspA1I	CMGCKG	1 cut(s)	353
MspR9I	CCNGG	3 cut(s)	67, 126, 260
MvaI	CCWGG	3 cut(s)	67, 126, 260
MwoI	GCNNNNNNNGC	4 cut(s)	33, 76, 521, 598
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	3 cut(s)	4, 121, 585
NlaIII	CATG	4 cut(s)	104, 248, 740, 752
NlaIV	GGNNCC	4 cut(s)	242, 264, 494, 799
NmuCI	GTSAC	3 cut(s)	190, 401, 716
NspV	TTCGAA	1 cut(s)	20
OliI	CACNNNNGTG	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	17
PfoI	TCCNGGA	2 cut(s)	124, 258
PkrI	GCNGC	3 cut(s)	81, 218, 352
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PsiI	TTATAA	1 cut(s)	74
Psp6I	CCWGG	3 cut(s)	65, 124, 258
PspFI	CCCAGC	1 cut(s)	892
PspGI	CCWGG	3 cut(s)	65, 124, 258
PspN4I	GGNNCC	4 cut(s)	242, 264, 494, 799
PspPI	GGNCC	1 cut(s)	590
PstI	CTGCAG	2 cut(s)	352, 485
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	3 cut(s)	393, 464, 494
RsaNI	GTAC	3 cut(s)	392, 463, 493
RseI	CAYNNNNRTG	3 cut(s)	151, 699, 741
SaqAI	TTAA	5 cut(s)	420, 446, 645, 666, 912
SatI	GCNGC	3 cut(s)	80, 217, 351
Sau3AI	GATC	3 cut(s)	4, 121, 585
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	3 cut(s)	67, 126, 260
SduI	GDGCHC	2 cut(s)	281, 748
SfaNI	GCATC	3 cut(s)	71, 217, 632
SfcI	CTRYAG	3 cut(s)	348, 481, 618
SfuI	TTCGAA	1 cut(s)	20
SmiMI	CAYNNNNRTG	3 cut(s)	151, 699, 741
Sse9I	AATT	4 cut(s)	140, 231, 507, 662
SsiI	CCGC	2 cut(s)	79, 266
SspMI	CTAG	3 cut(s)	161, 416, 854
StyD4I	CCNGG	3 cut(s)	65, 124, 258
StyI	CCWWGG	2 cut(s)	244, 458
TaaI	ACNGT	3 cut(s)	115, 568, 775
TaiI	ACGT	2 cut(s)	291, 868
TaqI	TCGA	4 cut(s)	7, 15, 20, 503
TasI	AATT	4 cut(s)	140, 231, 507, 662
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	5 cut(s)	420, 446, 645, 666, 912
Tru9I	TTAA	5 cut(s)	420, 446, 645, 666, 912
TscAI	CASTG	1 cut(s)	793
TseFI	GTSAC	3 cut(s)	190, 401, 716
TseI	GCWGC	2 cut(s)	216, 350
Tsp45I	GTSAC	3 cut(s)	190, 401, 716
TspDTI	ATGAA	1 cut(s)	753
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	793
XagI	CCTNNNNNAGG	1 cut(s)	445
XapI	RAATTY	2 cut(s)	507, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XspI	CTAG	3 cut(s)	161, 416, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.