Rh6DG249800

Tetraketide alpha-pyrone reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008638
Physical Location & Seq
Reverse (-)
43775970 .. 43778489
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG249800.1

Sequence Viewer

Length: 783 bp
ATGTGTCAGGTATCTAGCAAGATAACATTTCACCTTAGATACCTTGTACACAAATTGAGTATTGTGTTTGTTTTGTGTCATGCAACACAGAAAGAAATCCTAGACCCCGCTATTGAAGGCACGTTGAATGTACTTCGTTCATGTAAGAAGAATCCATCTCTAAGGCGTGTGGTTCTCACCTCATCTTCTTCAGCTGTAAGGGTGAGAGATGGTGATGATTTTGACCCCAATATTCCATTGGATGAGTCATCTTGGAGCTCTGTGGAACTCTGCCAGAAACTGCAGATTTGGTACCCTTTATCAAAAATTTTAGCTGAGAGGGCAGCATCGGATTTCTGCAAAGCAAATGGGATCGATTTAGTAACCGTTCTACCCACATTCGTCGTTGGACCTAGTTTGCCACCTGATTTATGTTCTACTGCATCTGATATACTTGGCCTGCTCAAGGGTGAAACAGAGAGGTTCAAATTGCATGGAAGAATGGGATATGTTCACATCGATGATGTTGCACTTTGCCACATCCTAGTTTATGAGCACAAAAGTGCTCATAGTCGATACATTTGCAACTCGACAGTGCTTGACAACAATGAGTTAGCATCCTTGCTATCCACAAGATATCCTTCCTTACCTATCCCTGAAAGGTTTGAGCAACTGGAAAGGCCACACTATGATTTCAACACCTCAAAGTTGAGGGCTCTAGGATTTAAGTTCAAGACTGTCCGAGAGATGTTTGATGATTGCATTGCCTCTCTGGTGGAGCAAGGCCATCTTTCTCCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase UFD1

Protein Analysis

260

Amino Acids

29.29

Weight (kDa)

6.79

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 29 - 182 1.2e-09 NAD dependent epimerase/dehydratase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 291
AciI CCGC 1 cut(s) 108
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 3 cut(s) 48, 132, 293
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 5 cut(s) 116, 127, 466, 676, 712
AleI CACNNNNGTG 1 cut(s) 540
AluBI AGCT 3 cut(s) 194, 258, 314
AluI AGCT 3 cut(s) 194, 258, 314
Alw21I GWGCWC 3 cut(s) 260, 537, 547
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 280
AoxI GGCC 3 cut(s) 436, 659, 763
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 306
Asp718I GGTACC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 5 cut(s) 23, 169, 214, 224, 461
AvaII GGWCC 1 cut(s) 389
BanI GGYRCC 1 cut(s) 291
BanII GRGCYC 2 cut(s) 260, 697
Bbv12I GWGCWC 3 cut(s) 260, 537, 547
BbvI GCAGC 1 cut(s) 335
BccI CCATC 3 cut(s) 163, 203, 774
BcgI CGANNNNNNTGC 4 cut(s) 488, 522, 543, 577
BfaI CTAG 5 cut(s) 15, 101, 393, 524, 698
BfmI CTRYAG 1 cut(s) 281
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 293
BmsI GCATC 3 cut(s) 335, 431, 605
BpuEI CTTGAG 1 cut(s) 428
Bsa29I ATCGAT 2 cut(s) 354, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 657
Bse3DI GCAATG 1 cut(s) 741
BseCI ATCGAT 2 cut(s) 354, 498
BseGI GGATG 3 cut(s) 247, 519, 596
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 657
BseXI GCAGC 1 cut(s) 335
BshFI GGCC 3 cut(s) 438, 661, 765
BshNI GGYRCC 1 cut(s) 291
BshVI ATCGAT 2 cut(s) 354, 498
BsiHKAI GWGCWC 3 cut(s) 260, 537, 547
BslI CCNNNNNNNGG 1 cut(s) 445
BsnI GGCC 3 cut(s) 438, 661, 765
Bsp1286I GDGCHC 4 cut(s) 260, 537, 547, 697
Bsp1407I TGTACA 1 cut(s) 46
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 1 cut(s) 108
BspANI GGCC 3 cut(s) 438, 661, 765
BspCNI CTCAG 1 cut(s) 307
BspDI ATCGAT 2 cut(s) 354, 498
BspLI GGNNCC 1 cut(s) 293
BspMAI CTGCAG 1 cut(s) 285
BspPI GGATC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 741
BsrGI TGTACA 1 cut(s) 46
BsrI ACTGG 1 cut(s) 657
BssMI GATC 1 cut(s) 351
Bst4CI ACNGT 3 cut(s) 367, 574, 718
BstAUI TGTACA 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 3 cut(s) 35, 161, 315
BstENI CCTNNNNNAGG 1 cut(s) 443
BstF5I GGATG 3 cut(s) 247, 519, 596
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 335
Bsu15I ATCGAT 2 cut(s) 354, 498
BsuRI GGCC 3 cut(s) 438, 661, 765
BsuTUI ATCGAT 2 cut(s) 354, 498
BtsCI GGATG 3 cut(s) 247, 519, 596
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 1 cut(s) 440
CaiI CAGNNNCTG 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 389
ClaI ATCGAT 2 cut(s) 354, 498
Csp6I GTAC 3 cut(s) 47, 131, 292
CviAII CATG 3 cut(s) 80, 141, 473
CviJI RGCY 7 cut(s) 194, 258, 314, 438, 661, 695, 765
CviKI_1 RGCY 7 cut(s) 194, 258, 314, 438, 661, 695, 765
CviQI GTAC 3 cut(s) 47, 131, 292
DdeI CTNAG 3 cut(s) 35, 161, 315
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Ecl136II GAGCTC 1 cut(s) 258
Eco24I GRGCYC 2 cut(s) 260, 697
Eco32I GATATC 1 cut(s) 617
Eco47I GGWCC 1 cut(s) 389
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 258
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoRV GATATC 1 cut(s) 617
EcoT38I GRGCYC 2 cut(s) 260, 697
FaeI CATG 3 cut(s) 83, 144, 476
FaiI YATR 9 cut(s) 81, 142, 412, 431, 474, 489, 531, 549, 669
FalI AAGNNNNNCTT 3 cut(s) 604, 636, 753
FatI CATG 3 cut(s) 79, 140, 472
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 3 cut(s) 254, 506, 583
FriOI GRGCYC 2 cut(s) 260, 697
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 5 cut(s) 15, 101, 393, 524, 698
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 3 cut(s) 438, 661, 765
Hin1II CATG 3 cut(s) 83, 144, 476
HinfI GANTC 2 cut(s) 151, 245
HphI GGTGA 5 cut(s) 23, 169, 214, 224, 461
Hpy166II GTNNAC 2 cut(s) 49, 493
Hpy188I TCNGA 3 cut(s) 331, 427, 722
Hpy188III TCNNGA 1 cut(s) 712
Hpy8I GTNNAC 2 cut(s) 49, 493
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 110, 630
HpyCH4III ACNGT 3 cut(s) 367, 574, 718
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 8 cut(s) 83, 283, 339, 422, 472, 509, 564, 741
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 3 cut(s) 35, 161, 315
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 3 cut(s) 83, 144, 476
KpnI GGTACC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 255, 757
LpnPI CCDG 6 cut(s) 287, 417, 452, 638, 648, 737
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 3 cut(s) 335, 431, 605
MaeI CTAG 5 cut(s) 15, 101, 393, 524, 698
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 361
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 4 cut(s) 160, 177, 180, 489
MhlI GDGCHC 4 cut(s) 260, 537, 547, 697
MluCI AATT 3 cut(s) 53, 306, 467
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 6 cut(s) 190, 312, 453, 684, 691, 757
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 2 cut(s) 498, 540
MspA1I CMGCKG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 1 cut(s) 351
NlaIII CATG 3 cut(s) 83, 144, 476
NlaIV GGNNCC 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 540
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 389
PstI CTGCAG 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 3 cut(s) 48, 132, 293
RsaNI GTAC 3 cut(s) 47, 131, 292
RseI CAYNNNNRTG 2 cut(s) 498, 540
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 4 cut(s) 260, 537, 547, 697
SfaNI GCATC 3 cut(s) 335, 431, 605
SfcI CTRYAG 1 cut(s) 281
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 2 cut(s) 498, 540
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 3 cut(s) 53, 306, 467
SsiI CCGC 1 cut(s) 108
SspI AATATT 1 cut(s) 232
SspMI CTAG 5 cut(s) 15, 101, 393, 524, 698
SstI GAGCTC 1 cut(s) 260
TaaI ACNGT 3 cut(s) 367, 574, 718
TaiI ACGT 1 cut(s) 125
TaqI TCGA 4 cut(s) 354, 498, 553, 569
TasI AATT 3 cut(s) 53, 306, 467
TatI WGTACW 2 cut(s) 46, 130
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 1 cut(s) 579
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 389
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 1 cut(s) 306
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XspI CTAG 5 cut(s) 15, 101, 393, 524, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.