Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008638

Physical Location & Seq

Genomic Coordinates Reverse (-)

18263131 .. 18269281

Gene Structure 6151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G183600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATCAGAAACTTGAATCGGGCAAAGTTTGCGTTACTGGGGCTTCTGGCTTTCTGGCATCTTGGCTTATTAAACGACTTCTCTTGTCTGGCTATCATGTAACCGGAACTGTTAGAGACCCAGGAAACCAGAAGAAATTGGCGCATTTGTGGAGGCTGGAAGGAGCTAGGGAAAGACTCAGATTGGTGAAGGCTGATTTAATGGAAGAAGGCAGCTTTGATGATGCAATCTTGGGGTGCCATGGTGTCTTCCACTCTGCTTCCCCTGTGCTGAAACCTTCATCTGATCCAAAGACAGAAATCCTGGAACCAGCTGTTGAGGGTACATTGAATGTGCTACGTTCGTGCAAGAAAAATCCGTCTCTAAGGCGTGTGGTTCTAACTTCATCTTCTTCAGCTGTAAGGGTGAGGCCAGATGAGGATTTCGACTCCAATATACCGCTGGATGAGTCGTCGTGGAGCTCTGTCAAAATCTGCGAGACACTTCAGATTTGGTACCCTTTATCGAAAATTTTAGCTGAGAAGGCGGCATGGGATTTCTGCAAAGAAAATGGGATTGATTTGGTAACTGTTCTGCCCTCGTTCGTGATCGGACCTTGTCTGCCATCAGATTTATGTTCTACTGCATCAGACGTACTTGGCCTGCTTAAAGGGGAAACAGAGAAGTTCAAGTGGCATGGAAGGATGGGATATGTTCACATTGATGATGTTGCACTTTGCCACATCTCAGTTTATGAGCATGAAAGTGCTCATGGTCGATACCTTTGCAGCTCAACAGTTTTGGACAACAATGAGTTGGCTTCCTTGTTATCCAGGCAATATCCTTCCTTACCTATCCCCAAAAGGTTTGAGCAACTAGGCAGGCCAAGGTATGATTTGAACACCTCAAAGTTGAAGAGTCTAGGGTTCAAGTTCAAGACTATCCAAGAGATGTTTGATGATTGTATTGCCTCATTGGTTGAGCAAGGTCATCTTACTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase UFD1

Protein Analysis

328

Amino Acids

36.39

Weight (kDa)

6.56

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35420
fragaria_vesca	FvH4_2g17230
malus_domestica	MD05G1145800.v1.1 MD05G1148800.v1.1 MD05G1148900.v1.1 MD10G1145200.v1.1 MD10G1145300.v1.1
prunus_persica	Prupe.8G183600_v2.0.a1 Prupe.8G183600_v2.0.a1
pyrus_communis	pycom05g14050 pycom10g12510 pycom10g12520
rosa_chinensis	RchiOBHm_Chr6g0281711
rosa_laevigata	RLG00000012944 RLG00000012947
rosa_multiflora	Rmu_sc0037975.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186890
rosa_rugosa	Rorug06G0142700
rosa_samantha	Rh6AG255700 Rh6BG258800 Rh6CG257700 Rh6DG249800
rosa_wichuraiana	Rw6G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	2 cut(s)	237, 495
AciI	CCGC	2 cut(s)	440, 527
AclWI	GGATC	2 cut(s)	12, 281
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	2 cut(s)	378, 470
AfaI	GTAC	3 cut(s)	325, 497, 636
AgsI	TTSAA	7 cut(s)	17, 331, 670, 880, 895, 910, 916
AjnI	CCWGG	3 cut(s)	121, 303, 812
AluBI	AGCT	7 cut(s)	167, 216, 314, 398, 462, 518, 771
AluI	AGCT	7 cut(s)	167, 216, 314, 398, 462, 518, 771
Alw21I	GWGCWC	2 cut(s)	464, 751
Alw26I	GTCTC	3 cut(s)	111, 366, 473
AlwI	GGATC	2 cut(s)	12, 281
AoxI	GGCC	3 cut(s)	410, 640, 863
ApeKI	GCWGC	2 cut(s)	213, 768
ApoI	RAATTY	1 cut(s)	510
Asp718I	GGTACC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	199, 418
AvaII	GGWCC	1 cut(s)	593
BanI	GGYRCC	2 cut(s)	237, 495
BanII	GRGCYC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	2 cut(s)	464, 751
BbvI	GCAGC	2 cut(s)	225, 780
BccI	CCATC	2 cut(s)	613, 679
BcgI	CGANNNNNNTGC	2 cut(s)	747, 781
BciT130I	CCWGG	3 cut(s)	123, 305, 814
BcoDI	GTCTC	3 cut(s)	111, 366, 473
BfaI	CTAG	4 cut(s)	168, 857, 902, 982
BisI	GCNGC	3 cut(s)	214, 528, 769
BlsI	GCNGC	3 cut(s)	215, 529, 770
Bme1390I	CCNGG	3 cut(s)	123, 305, 814
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	3 cut(s)	239, 309, 497
BmrFI	CCNGG	3 cut(s)	123, 305, 814
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	3 cut(s)	68, 214, 635
BmuI	ACTGGG	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	121, 241, 866
BsaWI	WCCGGW	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	3 cut(s)	123, 305, 814
BseDI	CCNNGG	3 cut(s)	121, 241, 866
BseGI	GGATG	2 cut(s)	451, 690
BseMII	CTCAG	3 cut(s)	193, 510, 741
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	225, 780
BshFI	GGCC	3 cut(s)	412, 642, 865
BshNI	GGYRCC	2 cut(s)	237, 495
BsiHKAI	GWGCWC	2 cut(s)	464, 751
BsiSI	CCGG	1 cut(s)	105
BsmAI	GTCTC	3 cut(s)	111, 366, 473
BsmBI	CGTCTC	1 cut(s)	366
BsnI	GGCC	3 cut(s)	412, 642, 865
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	464, 751
Bsp143I	GATC	3 cut(s)	4, 286, 588
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	2 cut(s)	440, 527
BspANI	GGCC	3 cut(s)	412, 642, 865
BspCNI	CTCAG	3 cut(s)	192, 511, 740
BspLI	GGNNCC	3 cut(s)	239, 309, 497
BspPI	GGATC	2 cut(s)	12, 281
BspT107I	GGYRCC	2 cut(s)	237, 495
BspTNI	GGTCTC	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	121, 241, 866
BssMI	GATC	3 cut(s)	4, 286, 588
BssT1I	CCWWGG	2 cut(s)	241, 866
Bst2UI	CCWGG	3 cut(s)	123, 305, 814
Bst4CI	ACNGT	3 cut(s)	112, 571, 778
Bst6I	CTCTTC	1 cut(s)	890
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	644, 863
BstDEI	CTNAG	4 cut(s)	179, 365, 519, 727
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	451, 690
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	3 cut(s)	7, 289, 591
BstMAI	GTCTC	3 cut(s)	111, 366, 473
BstMBI	GATC	3 cut(s)	4, 286, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 524
BstNI	CCWGG	3 cut(s)	123, 305, 814
BstSCI	CCNGG	3 cut(s)	121, 303, 812
BstV1I	GCAGC	2 cut(s)	225, 780
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	412, 642, 865
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	451, 690
Cac8I	GCNNGC	2 cut(s)	644, 863
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	593
Csp6I	GTAC	3 cut(s)	324, 496, 635
CviAII	CATG	6 cut(s)	98, 242, 531, 677, 740, 752
CviQI	GTAC	3 cut(s)	324, 496, 635
DdeI	CTNAG	4 cut(s)	179, 365, 519, 727
DpnI	GATC	3 cut(s)	6, 288, 590
DpnII	GATC	3 cut(s)	4, 286, 588
Eam1104I	CTCTTC	1 cut(s)	890
EarI	CTCTTC	1 cut(s)	890
Ecl136II	GAGCTC	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	241, 866
Eco24I	GRGCYC	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	593
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	2 cut(s)	378, 470
EcoICRI	GAGCTC	1 cut(s)	462
EcoRII	CCWGG	3 cut(s)	121, 303, 812
EcoT14I	CCWWGG	2 cut(s)	241, 866
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	2 cut(s)	241, 866
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	6 cut(s)	101, 245, 534, 680, 743, 755
FalI	AAGNNNNNCTT	1 cut(s)	957
FatI	CATG	6 cut(s)	97, 241, 530, 676, 739, 751
Fnu4HI	GCNGC	3 cut(s)	214, 528, 769
FokI	GGATG	2 cut(s)	458, 697
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	214, 528, 769
FspBI	CTAG	4 cut(s)	168, 857, 902, 982
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	3 cut(s)	214, 528, 769
HaeIII	GGCC	3 cut(s)	412, 642, 865
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	6 cut(s)	101, 245, 534, 680, 743, 755
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	5 cut(s)	17, 177, 428, 449, 898
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	2 cut(s)	199, 418
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	7 cut(s)	9, 182, 286, 489, 593, 610, 631
Hpy188III	TCNNGA	2 cut(s)	586, 916
Hpy8I	GTNNAC	1 cut(s)	697
Hpy99I	CGWCG	1 cut(s)	457
HpyAV	CCTTC	7 cut(s)	155, 184, 203, 288, 517, 675, 834
HpyCH4III	ACNGT	3 cut(s)	112, 571, 778
HpyCH4IV	ACGT	2 cut(s)	340, 633
HpyCH4V	TGCA	6 cut(s)	227, 348, 543, 626, 713, 768
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 524
HpyF3I	CTNAG	4 cut(s)	179, 365, 519, 727
HpySE526I	ACGT	2 cut(s)	340, 633
Hsp92II	CATG	6 cut(s)	101, 245, 534, 680, 743, 755
HspAI	GCGC	1 cut(s)	143
KpnI	GGTACC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	4, 286, 588
LmnI	GCTCC	2 cut(s)	164, 459
Lsp1109I	GCAGC	2 cut(s)	225, 780
LweI	GCATC	3 cut(s)	68, 214, 635
MaeI	CTAG	4 cut(s)	168, 857, 902, 982
MaeII	ACGT	2 cut(s)	340, 633
MaeIII	GTNAC	3 cut(s)	34, 100, 565
MalI	GATC	3 cut(s)	6, 288, 590
MboI	GATC	3 cut(s)	4, 286, 588
MboII	GAAGA	6 cut(s)	145, 218, 241, 381, 384, 907
MhlI	GDGCHC	2 cut(s)	464, 751
MluCI	AATT	2 cut(s)	137, 510
MlyI	GAGTC	4 cut(s)	171, 422, 458, 907
MnlI	CCTC	7 cut(s)	147, 313, 402, 412, 589, 895, 961
MseI	TTAA	3 cut(s)	72, 200, 648
MslI	CAYNNNNRTG	2 cut(s)	702, 744
MspA1I	CMGCKG	3 cut(s)	314, 398, 442
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	123, 305, 814
MvaI	CCWGG	3 cut(s)	123, 305, 814
MwoI	GCNNNNNNNGC	2 cut(s)	30, 524
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	3 cut(s)	4, 286, 588
NlaIII	CATG	6 cut(s)	101, 245, 534, 680, 743, 755
NlaIV	GGNNCC	3 cut(s)	239, 309, 497
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	597
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	3 cut(s)	215, 529, 770
PleI	GAGTC	4 cut(s)	171, 422, 457, 906
PpsI	GAGTC	4 cut(s)	171, 422, 457, 906
Psp124BI	GAGCTC	1 cut(s)	464
Psp6I	CCWGG	3 cut(s)	121, 303, 812
PspGI	CCWGG	3 cut(s)	121, 303, 812
PspN4I	GGNNCC	3 cut(s)	239, 309, 497
PspPI	GGNCC	1 cut(s)	593
PsyI	GACNNNGTC	1 cut(s)	597
PvuII	CAGCTG	2 cut(s)	314, 398
RsaI	GTAC	3 cut(s)	325, 497, 636
RsaNI	GTAC	3 cut(s)	324, 496, 635
RseI	CAYNNNNRTG	2 cut(s)	702, 744
SacI	GAGCTC	1 cut(s)	464
SaqAI	TTAA	3 cut(s)	72, 200, 648
SatI	GCNGC	3 cut(s)	214, 528, 769
Sau3AI	GATC	3 cut(s)	4, 286, 588
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	4 cut(s)	171, 422, 458, 907
ScrFI	CCNGG	3 cut(s)	123, 305, 814
SduI	GDGCHC	2 cut(s)	464, 751
SfaNI	GCATC	3 cut(s)	68, 214, 635
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	2 cut(s)	702, 744
Sse9I	AATT	2 cut(s)	137, 510
SsiI	CCGC	2 cut(s)	440, 527
SspMI	CTAG	4 cut(s)	168, 857, 902, 982
SstI	GAGCTC	1 cut(s)	464
StyD4I	CCNGG	3 cut(s)	121, 303, 812
StyI	CCWWGG	2 cut(s)	241, 866
TaaI	ACNGT	3 cut(s)	112, 571, 778
TaiI	ACGT	2 cut(s)	343, 636
TaqI	TCGA	3 cut(s)	426, 506, 757
TasI	AATT	2 cut(s)	137, 510
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	72, 200, 648
Tru9I	TTAA	3 cut(s)	72, 200, 648
TseI	GCWGC	2 cut(s)	213, 768
TspDTI	ATGAA	3 cut(s)	270, 375, 756
TspGWI	ACGGA	1 cut(s)	348
Tth111I	GACNNNGTC	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	1 cut(s)	510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	4 cut(s)	168, 857, 902, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.