Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008638

Physical Location & Seq

Genomic Coordinates Reverse (-)

14909082 .. 14911385

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATCAAAATCTTGAATCCAAAGGCAGAGTTTGCGTTACGGGAGCTTCTGGCTTTCTAGCATCTTGGCTTATTAAGCGACTTCTCTTGTCAGGATATCATGTCACTGGAACTGTCAGAGATCCAGGCAACCAGAAGAAACTGGCACATTTGTGGAGGCTGGAAGGAGCTAAAGAAAGACTGAGATTGGTGAAGGCTGACTTAGTTGAAGAAGGTAGCTTTGATGATGCAATCTTGGGGTGCCATGGTGTTTTCCACTCAGCTTCTCCTGTACTCAAACCTTCATCTGATCCAAAGAAAGAAATATTGGATCCGGCTATTAAGGGCACGTTGAATGTGCTTCGTTCATGTAAGAAGAATCCATCTCTAAGGCGTGTGGTTCTCACTTCGTCTACTTCAGCTGTAAGGGTGAGAGCTGGTGATGATTTTGACCCCAATATCCCATTGGATGAGTCATCTTGGAGCTCTGTAGAACTCTGCGAGAAACTTCAGATTTGGTACCCTTTATCAAAAATTTTAGCTGAGAAGGCAGCATGGGAATTTTGCAAAGCAAATGGGATCGATTTAGTATCCGTTCTACCCACATTTGTCATCGGACCTAGTTTGCCACCTGATCTATGTTCTACTGCATCTGATATACTTGGCCTGCTCAAGGGTGAAACAGAGAAGTTCAATTGGCATGGAAGAATGGGATATGTTCACATCGATGATGTTGCCCTTTGCCACATCCTAGTTTATGAGCATGAAAGTGCTCACGGTCGATACATTTGCAACTCGACAGTGCTTGACAACAATGAGTTAGCATCCTTGCTATGCACACGATATCCTTCCTTACCTATCCCCGAAAGGTTTGAGGAACTGGAAAGGCCACACTATGATTTGAGCACTTCAAAGTTGAAGAGTCTAGGATTCAAGTTCAAGACCATCCAAGAGATGTTTGATGATTGCATTGCCTCTCTGGTGGAGCAAGGACATCTTTCTCCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase UFD1

Protein Analysis

330

Amino Acids

36.55

Weight (kDa)

6.27

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	11 - 252	4.4e-23	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	13 - 187	1.1e-12	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	13 - 203	1.8e-11	Male sterility protein
GDP_Man_Dehyd	PF16363	13 - 135	5e-09	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	15 - 138	5.2e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35420
fragaria_vesca	FvH4_2g17230
malus_domestica	MD05G1145800.v1.1 MD05G1148800.v1.1 MD05G1148900.v1.1 MD10G1145200.v1.1 MD10G1145300.v1.1
prunus_persica	Prupe.8G183600_v2.0.a1 Prupe.8G183600_v2.0.a1
pyrus_communis	pycom05g14050 pycom10g12510 pycom10g12520
rosa_chinensis	RchiOBHm_Chr6g0281711
rosa_laevigata	RLG00000012944 RLG00000012947
rosa_multiflora	Rmu_sc0037975.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186890
rosa_rugosa	Rorug06G0142700
rosa_samantha	Rh6AG255700 Rh6BG258800 Rh6CG257700 Rh6DG249800
rosa_wichuraiana	Rw6G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	498
AccB1I	GGYRCC	2 cut(s)	240, 498
AccI	GTMKAC	1 cut(s)	392
AclWI	GGATC	6 cut(s)	12, 116, 284, 305, 318, 566
AcsI	RAATTY	2 cut(s)	513, 539
AcuI	CTGAAG	2 cut(s)	381, 473
AfaI	GTAC	2 cut(s)	273, 500
AfiI	CCNNNNNNNGG	1 cut(s)	652
AgsI	TTSAA	8 cut(s)	17, 209, 334, 673, 891, 898, 913, 919
AjnI	CCWGG	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AleI	CACNNNNGTG	1 cut(s)	151
AluBI	AGCT	8 cut(s)	47, 170, 219, 263, 401, 416, 465, 521
AluI	AGCT	8 cut(s)	47, 170, 219, 263, 401, 416, 465, 521
Alw21I	GWGCWC	3 cut(s)	467, 754, 887
AlwI	GGATC	6 cut(s)	12, 116, 284, 305, 318, 566
AoxI	GGCC	2 cut(s)	643, 866
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	2 cut(s)	513, 539
Asp718I	GGTACC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	4 cut(s)	202, 421, 431, 668
AvaII	GGWCC	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	2 cut(s)	240, 498
BanII	GRGCYC	1 cut(s)	467
Bbv12I	GWGCWC	3 cut(s)	467, 754, 887
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	2 cut(s)	370, 932
BcgI	CGANNNNNNTGC	4 cut(s)	695, 729, 750, 784
BciT130I	CCWGG	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	580
BfaI	CTAG	5 cut(s)	59, 600, 731, 905, 988
BfmI	CTRYAG	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	580
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	3 cut(s)	242, 312, 500
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	4 cut(s)	71, 217, 638, 812
BpuEI	CTTGAG	1 cut(s)	635
Bsa29I	ATCGAT	2 cut(s)	561, 705
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	3 cut(s)	112, 147, 864
Bse3DI	GCAATG	1 cut(s)	948
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	126
BseCI	ATCGAT	2 cut(s)	561, 705
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	4 cut(s)	454, 726, 803, 924
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	3 cut(s)	173, 273, 513
BseNI	ACTGG	3 cut(s)	112, 147, 864
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	542
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	2 cut(s)	645, 868
BshNI	GGYRCC	2 cut(s)	240, 498
BshVI	ATCGAT	2 cut(s)	561, 705
BsiEI	CGRYCG	1 cut(s)	760
BsiHKAI	GWGCWC	3 cut(s)	467, 754, 887
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	652
BsnI	GGCC	2 cut(s)	645, 868
Bsp1286I	GDGCHC	4 cut(s)	329, 467, 754, 887
Bsp143I	GATC	6 cut(s)	4, 121, 289, 310, 558, 613
Bsp19I	CCATGG	1 cut(s)	244
BspANI	GGCC	2 cut(s)	645, 868
BspCNI	CTCAG	3 cut(s)	174, 272, 514
BspDI	ATCGAT	2 cut(s)	561, 705
BspLI	GGNNCC	3 cut(s)	242, 312, 500
BspPI	GGATC	6 cut(s)	12, 116, 284, 305, 318, 566
BspT107I	GGYRCC	2 cut(s)	240, 498
BsrDI	GCAATG	1 cut(s)	948
BsrI	ACTGG	3 cut(s)	112, 147, 864
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	6 cut(s)	4, 121, 289, 310, 558, 613
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	3 cut(s)	115, 758, 781
Bst6I	CTCTTC	1 cut(s)	893
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	647
BstDEI	CTNAG	5 cut(s)	182, 202, 259, 368, 522
BstDSI	CCRYGG	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	650
BstF5I	GGATG	4 cut(s)	454, 726, 803, 924
BstKTI	GATC	6 cut(s)	7, 124, 292, 313, 561, 616
BstMBI	GATC	6 cut(s)	4, 121, 289, 310, 558, 613
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 76, 527
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	542
BstX2I	RGATCY	2 cut(s)	121, 310
BstYI	RGATCY	2 cut(s)	121, 310
Bsu15I	ATCGAT	2 cut(s)	561, 705
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	645, 868
BsuTUI	ATCGAT	2 cut(s)	561, 705
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	4 cut(s)	454, 726, 803, 924
BtsIMutI	CAGTG	2 cut(s)	105, 786
Cac8I	GCNNGC	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	596
ClaI	ATCGAT	2 cut(s)	561, 705
Csp6I	GTAC	2 cut(s)	272, 499
CviAII	CATG	6 cut(s)	101, 245, 348, 534, 680, 743
CviQI	GTAC	2 cut(s)	272, 499
DdeI	CTNAG	5 cut(s)	182, 202, 259, 368, 522
DpnI	GATC	6 cut(s)	6, 123, 291, 312, 560, 615
DpnII	GATC	6 cut(s)	4, 121, 289, 310, 558, 613
Eam1104I	CTCTTC	1 cut(s)	893
EarI	CTCTTC	1 cut(s)	893
Ecl136II	GAGCTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	467
Eco32I	GATATC	2 cut(s)	98, 824
Eco47I	GGWCC	1 cut(s)	596
Eco53kI	GAGCTC	1 cut(s)	465
Eco57I	CTGAAG	2 cut(s)	381, 473
EcoICRI	GAGCTC	1 cut(s)	465
EcoNI	CCTNNNNNAGG	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	124
EcoRV	GATATC	2 cut(s)	98, 824
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	6 cut(s)	104, 248, 351, 537, 683, 746
FalI	AAGNNNNNCTT	3 cut(s)	185, 217, 960
FatI	CATG	6 cut(s)	100, 244, 347, 533, 679, 742
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	4 cut(s)	461, 713, 790, 911
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	531
FspBI	CTAG	5 cut(s)	59, 600, 731, 905, 988
GluI	GCNGC	1 cut(s)	531
HaeIII	GGCC	2 cut(s)	645, 868
HapII	CCGG	1 cut(s)	314
Hin1II	CATG	6 cut(s)	104, 248, 351, 537, 683, 746
HinfI	GANTC	5 cut(s)	17, 358, 452, 901, 909
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	4 cut(s)	202, 421, 431, 668
Hpy166II	GTNNAC	2 cut(s)	393, 700
Hpy188I	TCNGA	5 cut(s)	119, 289, 492, 596, 634
Hpy188III	TCNNGA	3 cut(s)	14, 93, 919
Hpy8I	GTNNAC	2 cut(s)	393, 700
HpyAV	CCTTC	6 cut(s)	158, 187, 206, 291, 520, 837
HpyCH4III	ACNGT	3 cut(s)	115, 758, 781
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	6 cut(s)	230, 546, 629, 771, 816, 948
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 76, 527
HpyF3I	CTNAG	5 cut(s)	182, 202, 259, 368, 522
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	6 cut(s)	104, 248, 351, 537, 683, 746
KpnI	GGTACC	1 cut(s)	502
Kzo9I	GATC	6 cut(s)	4, 121, 289, 310, 558, 613
LmnI	GCTCC	4 cut(s)	44, 167, 462, 964
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	4 cut(s)	71, 217, 638, 812
MaeI	CTAG	5 cut(s)	59, 600, 731, 905, 988
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	37, 103
MalI	GATC	6 cut(s)	6, 123, 291, 312, 560, 615
MboI	GATC	6 cut(s)	4, 121, 289, 310, 558, 613
MboII	GAAGA	5 cut(s)	148, 221, 367, 696, 910
MfeI	CAATTG	1 cut(s)	673
MflI	RGATCY	2 cut(s)	121, 310
MhlI	GDGCHC	4 cut(s)	329, 467, 754, 887
MluCI	AATT	3 cut(s)	513, 539, 673
MlyI	GAGTC	2 cut(s)	461, 910
MnlI	CCTC	3 cut(s)	150, 847, 964
MseI	TTAA	2 cut(s)	75, 321
MslI	CAYNNNNRTG	3 cut(s)	151, 705, 747
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	673
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	33, 76, 527
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	6 cut(s)	4, 121, 289, 310, 558, 613
NlaIII	CATG	6 cut(s)	104, 248, 351, 537, 683, 746
NlaIV	GGNNCC	3 cut(s)	242, 312, 500
NmuCI	GTSAC	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	151
PfeI	GAWTC	3 cut(s)	17, 358, 909
PkrI	GCNGC	1 cut(s)	532
PleI	GAGTC	2 cut(s)	460, 909
PpsI	GAGTC	2 cut(s)	460, 909
Psp124BI	GAGCTC	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	3 cut(s)	242, 312, 500
PspPI	GGNCC	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	121, 310
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	273, 500
RsaNI	GTAC	2 cut(s)	272, 499
RseI	CAYNNNNRTG	3 cut(s)	151, 705, 747
SacI	GAGCTC	1 cut(s)	467
SaqAI	TTAA	2 cut(s)	75, 321
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	6 cut(s)	4, 121, 289, 310, 558, 613
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	2 cut(s)	461, 910
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	4 cut(s)	329, 467, 754, 887
SfaNI	GCATC	4 cut(s)	71, 217, 638, 812
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	3 cut(s)	151, 705, 747
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	3 cut(s)	513, 539, 673
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	5 cut(s)	59, 600, 731, 905, 988
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	3 cut(s)	115, 758, 781
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	4 cut(s)	561, 705, 760, 776
TasI	AATT	3 cut(s)	513, 539, 673
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	17, 358, 909
Tru1I	TTAA	2 cut(s)	75, 321
Tru9I	TTAA	2 cut(s)	75, 321
TscAI	CASTG	2 cut(s)	112, 786
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	530
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	3 cut(s)	273, 336, 759
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	2 cut(s)	112, 786
VpaK11BI	GGWCC	1 cut(s)	596
XagI	CCTNNNNNAGG	1 cut(s)	650
XapI	RAATTY	2 cut(s)	513, 539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	5 cut(s)	59, 600, 731, 905, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.