Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008638

Physical Location & Seq

Genomic Coordinates Reverse (-)

17553205 .. 17554791

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14050.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAAGAAGGCAGCTTTGATGATGCAATTTTTGGGTGCCATGGCGTTTTCCACTCTGCTTCCCCTGTTTTAAAACCTTCGTCTGATCCCAAGACAGAAATCCTGGAACCGCCTGCTGAGGGCACATTGAACATGTTGCGTTCGTGGAAGAAAAATCCGTCTCTAAGGCGCGTGGTTCTCACCTCATCTTCTGCAGCTGTAAAGGTGAGACCAGATGGGGATTTCACCTCCAATGTACCACTGGATGAGTCATCTTGGAGCTTGGTCGAACTCTGGGTGACTCTTCAGATTTGGTACCCTATGTTGAAAATTTTAGCTAAGAAAGCAGGATGGGATTTCTGCAAAGAAAATGGGATTGATATGGTTACTGTCCTACCCACCTTCGTGATCGGGCCTTGTTTGCCACCTGAGTTGTGTTCTACTGCATCAGATGTTCTTGGCCTGCTTAGAGGGGAAACAGAGAAATTTAAGTGGCATGGAAGGATGGGGTACGTTCACATTGATGATGTTGCACTCTGTCACATCTTAGTTTATGAGCATGAAAGTGCTCATGGCAAATATGTTTGTAGCTCAACAGTTATGGACAACACTGAGTTGGGTTCCTTATTATCTACAAGATATCCTTCCTTGCCTATCCCCACAAGGTTTGAGCAACTAGGGAGGCCACATTATTATGAGTTGAACACCTCAAAGATGGAGAGTCTAGGGTTCATGTTCAAGAGTATCCAAGAGATGTTTGATGATTGCATTGCCTCTTTGGTGGAGCAAGGCCATCTTCCTGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase UFD1

Protein Analysis

263

Amino Acids

29.27

Weight (kDa)

5.36

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35420
fragaria_vesca	FvH4_2g17230
malus_domestica	MD05G1145800.v1.1 MD05G1148800.v1.1 MD05G1148900.v1.1 MD10G1145200.v1.1 MD10G1145300.v1.1
prunus_persica	Prupe.8G183600_v2.0.a1 Prupe.8G183600_v2.0.a1
pyrus_communis	pycom05g14050 pycom10g12510 pycom10g12520
rosa_chinensis	RchiOBHm_Chr6g0281711
rosa_laevigata	RLG00000012944 RLG00000012947
rosa_multiflora	Rmu_sc0037975.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186890
rosa_rugosa	Rorug06G0142700
rosa_samantha	Rh6AG255700 Rh6BG258800 Rh6CG257700 Rh6DG249800
rosa_wichuraiana	Rw6G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	294
AccB1I	GGYRCC	2 cut(s)	36, 294
AccII	CGCG	1 cut(s)	171
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	309, 464
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	3 cut(s)	237, 296, 491
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	4 cut(s)	130, 307, 682, 718
AjnI	CCWGG	1 cut(s)	102
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	5 cut(s)	15, 197, 261, 317, 570
AluI	AGCT	5 cut(s)	15, 197, 261, 317, 570
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	2 cut(s)	165, 202
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	4 cut(s)	392, 439, 662, 769
ApeKI	GCWGC	2 cut(s)	12, 194
ApoI	RAATTY	2 cut(s)	309, 464
Asp718I	GGTACC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	4 cut(s)	172, 217, 217, 289
BaeGI	GKGCMC	1 cut(s)	125
BanI	GGYRCC	2 cut(s)	36, 294
Bbv12I	GWGCWC	1 cut(s)	550
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	24, 206
BccI	CCATC	5 cut(s)	209, 324, 478, 688, 780
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	734
BcoDI	GTCTC	2 cut(s)	165, 202
BfaI	CTAG	2 cut(s)	656, 704
BfmI	CTRYAG	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	734
BisI	GCNGC	2 cut(s)	13, 195
BlsI	GCNGC	2 cut(s)	14, 196
Bme1390I	CCNGG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	4 cut(s)	38, 108, 296, 601
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	13, 434
Bpu10I	CCTNAGC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	3 cut(s)	250, 335, 489
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	3 cut(s)	108, 399, 582
BseNI	ACTGG	1 cut(s)	246
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	24, 206
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	4 cut(s)	394, 441, 664, 771
BshNI	GGYRCC	2 cut(s)	36, 294
BsiHKAI	GWGCWC	1 cut(s)	550
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	165, 202
BsmBI	CGTCTC	1 cut(s)	165
BsnI	GGCC	4 cut(s)	394, 441, 664, 771
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	125, 550
Bsp143I	GATC	2 cut(s)	85, 387
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	4 cut(s)	394, 441, 664, 771
BspCNI	CTCAG	3 cut(s)	109, 400, 583
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	4 cut(s)	38, 108, 296, 601
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	80
BspT107I	GGYRCC	2 cut(s)	36, 294
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	85, 387
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	370, 577
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	114, 443
BstDEI	CTNAG	7 cut(s)	117, 164, 318, 408, 446, 526, 591
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	3 cut(s)	250, 335, 489
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	2 cut(s)	88, 390
BstMAI	GTCTC	2 cut(s)	165, 202
BstMBI	GATC	2 cut(s)	85, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 400
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	125
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	24, 206
BsuI	GTATCC	1 cut(s)	734
BsuRI	GGCC	4 cut(s)	394, 441, 664, 771
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	250, 335, 489
BtsIMutI	CAGTG	2 cut(s)	239, 588
Cac8I	GCNNGC	2 cut(s)	114, 443
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	236, 295, 490
CspCI	CAANNNNNGTGG	4 cut(s)	393, 428, 628, 663
CviAII	CATG	6 cut(s)	41, 133, 476, 539, 551, 712
CviJI	RGCY	9 cut(s)	15, 197, 261, 317, 394, 441, 570, 664, 771
CviKI_1	RGCY	9 cut(s)	15, 197, 261, 317, 394, 441, 570, 664, 771
CviQI	GTAC	3 cut(s)	236, 295, 490
DdeI	CTNAG	7 cut(s)	117, 164, 318, 408, 446, 526, 591
DpnI	GATC	2 cut(s)	87, 389
DpnII	GATC	2 cut(s)	85, 387
DraI	TTTAAA	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	6 cut(s)	44, 136, 479, 542, 554, 715
FalI	AAGNNNNNCTT	3 cut(s)	607, 639, 759
FatI	CATG	6 cut(s)	40, 132, 475, 538, 550, 711
Fnu4HI	GCNGC	2 cut(s)	13, 195
FokI	GGATG	3 cut(s)	257, 342, 496
Fsp4HI	GCNGC	2 cut(s)	13, 195
FspBI	CTAG	2 cut(s)	656, 704
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	13, 195
HaeIII	GGCC	4 cut(s)	394, 441, 664, 771
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	6 cut(s)	44, 136, 479, 542, 554, 715
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	248, 280, 700
HphI	GGTGA	4 cut(s)	172, 217, 217, 289
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	3 cut(s)	85, 288, 430
Hpy188III	TCNNGA	2 cut(s)	385, 718
Hpy8I	GTNNAC	1 cut(s)	496
HpyAV	CCTTC	4 cut(s)	87, 391, 474, 633
HpyCH4III	ACNGT	2 cut(s)	370, 577
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	7 cut(s)	26, 194, 342, 425, 512, 747, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 400
HpyF3I	CTNAG	7 cut(s)	117, 164, 318, 408, 446, 526, 591
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	6 cut(s)	44, 136, 479, 542, 554, 715
HspAI	GCGC	1 cut(s)	169
KpnI	GGTACC	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	85, 387
LmnI	GCTCC	2 cut(s)	258, 763
Lsp1109I	GCAGC	2 cut(s)	24, 206
LweI	GCATC	2 cut(s)	13, 434
MaeI	CTAG	2 cut(s)	656, 704
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	277, 364, 518
MalI	GATC	2 cut(s)	87, 389
MboI	GATC	2 cut(s)	85, 387
MboII	GAAGA	5 cut(s)	17, 160, 180, 275, 767
MhlI	GDGCHC	2 cut(s)	125, 550
MluCI	AATT	3 cut(s)	27, 309, 464
MlyI	GAGTC	3 cut(s)	257, 274, 709
MnlI	CCTC	7 cut(s)	112, 193, 238, 443, 654, 697, 763
MseI	TTAA	2 cut(s)	71, 468
MslI	CAYNNNNRTG	4 cut(s)	383, 501, 543, 672
MspA1I	CMGCKG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	323, 400
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	2 cut(s)	85, 387
NlaIII	CATG	6 cut(s)	44, 136, 479, 542, 554, 715
NlaIV	GGNNCC	4 cut(s)	38, 108, 296, 601
NmuCI	GTSAC	2 cut(s)	277, 518
NspI	RCATGY	1 cut(s)	136
OliI	CACNNNNGTG	1 cut(s)	383
PciI	ACATGT	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	14, 196
PleI	GAGTC	3 cut(s)	256, 274, 708
PpsI	GAGTC	3 cut(s)	256, 274, 708
PscI	ACATGT	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	4 cut(s)	38, 108, 296, 601
PspPI	GGNCC	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	3 cut(s)	237, 296, 491
RsaNI	GTAC	3 cut(s)	236, 295, 490
RseI	CAYNNNNRTG	4 cut(s)	383, 501, 543, 672
SaqAI	TTAA	2 cut(s)	71, 468
SatI	GCNGC	2 cut(s)	13, 195
Sau3AI	GATC	2 cut(s)	85, 387
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	3 cut(s)	257, 274, 709
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	125, 550
SfaNI	GCATC	2 cut(s)	13, 434
SfcI	CTRYAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	4 cut(s)	383, 501, 543, 672
Sse9I	AATT	3 cut(s)	27, 309, 464
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	2 cut(s)	656, 704
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	370, 577
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	27, 309, 464
Tru1I	TTAA	2 cut(s)	71, 468
Tru9I	TTAA	2 cut(s)	71, 468
TscAI	CASTG	2 cut(s)	246, 595
TseFI	GTSAC	2 cut(s)	277, 518
TseI	GCWGC	2 cut(s)	12, 194
Tsp45I	GTSAC	2 cut(s)	277, 518
TspDTI	ATGAA	2 cut(s)	555, 700
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	246, 595
XapI	RAATTY	2 cut(s)	309, 464
XceI	RCATGY	1 cut(s)	136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XspI	CTAG	2 cut(s)	656, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.