Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005850

Physical Location & Seq

Genomic Coordinates Reverse (-)

17419918 .. 17422130

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36945.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAGAGATTCAATTTCTTTAATCTGATGATCATAGCTTTATGTTTATCATCCTTCGTTCACAGTCTCGAGATGGGAGAAACATGTAGTTCGACCAGCGAATGCGACGCCGGATTGAGCTGTCAAAGTTGTCCGGCGAATGGAAATACCGGCTCTACTTGTACCCGGATCCAACCTCTTAACCCGACTTCAAAGGTGAATGGTTTGCCGTTTAACAAGTACTCGTGGCTAACAACACACAATTCGTACGCAATCACGGGGGCAAATTCGGCAACTGGTTCATTCCTTGTCTCTCCAAAGAATCAAGAAGACTCCATCACCAATCAGCTTAAGAATGGTGTGAGAGGTATAATGCTAGATACATATGATTTTCAAAACGATATATGGTTGTGTCATTCCACTGGAGGGACTTGCTTTAACTTCACAGCCTTTCAACCAGCTATCAATGCACTTAAAGAGATCAATGATTTTCTTGAATCAAACTTGTCTGAGATTGTTACTATCATACTTGAAGATTATGTCAAATCTCAAATGGGATTGACTAATGTATTCAATGCATCTGGATTGAGTAAGTTCTTGTTACCAATCTCGAGAATGCCGAAAGACGGTACAGACTGGCCAACGGTTGATGATATGGTGAAGCAGAACCAAAGGCTTGTGGTTTTTACTTCCAAGAAGGATAAAGAAGCTTCTGAAGGTCTTGCTTACCAGTGGAATTACATGGTTGAAAATCAATATGGTAATGATGGAATGAAGGATGGATCATGCTCGAGTCGATCTGAATCTTCTTCACTAGATACCATGTCTCGGTCTTTGGTGTTTCAGAACTACTTTGAAACCAGTCCGAATTCAACGCAAGCGTGTGCGGATAATTCCTCTCCGTTGATCGAAATGATGAGAACTTGCCATGAAGCAGCGGGTAAAAGGTGGCCTAACTTCATAGCTGTTGATTTTTATCAGAGGAGTGATAGTGGAGGAGCTGCCGAAGCTGTAGATGAAGCAAACGGTCGTCTCACATGTGGTTGTGACAGCTTAGTCTATTGCAAGTCAAACGCACCTTTTGGCACTTGTGATGCTCCTCCTCCGAAGTCGTCTCCATCACCAGTCTCCGGAGGGAAGGATACTTCACGGAAACCAAGAAATCTTCCTGCGGGTAATGCTGATTCTACAGCTATTGGATTGTCATCTCTCGTTCTAATCTCTGCGGCGACTCTCTTGCTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

44.33

Weight (kDa)

4.99

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	58 - 349	3.5e-159	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	97 - 327	3.9e-24	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36945
fragaria_vesca	FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200
malus_domestica	MD02G1173900.v1.1
prunus_persica	Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1
pyrus_communis	pycom02g14020 pycom15g24810
rosa_chinensis	RchiOBHm_Chr2g0105901
rosa_laevigata	RLG00000017468
rosa_multiflora	Rmu_sc0004367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00137590 Rroxscaffold_2G00137740
rosa_rugosa	Rorug02G0131700 Rorug02G0131800
rosa_samantha	Rh2AG182300 Rh2BG192300 Rh2CG186900 Rh2DG188800
rosa_wichuraiana	Rw2G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1034
AccIII	TCCGGA	1 cut(s)	1109
AciI	CCGC	4 cut(s)	866, 917, 1151, 1205
AclWI	GGATC	3 cut(s)	163, 176, 769
AcoI	YGGCCR	1 cut(s)	617
AcsI	RAATTY	2 cut(s)	265, 847
AcuI	CTGAAG	1 cut(s)	714
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	4 cut(s)	163, 221, 248, 610
AfiI	CCNNNNNNNGG	5 cut(s)	140, 405, 605, 807, 1109
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	2 cut(s)	83, 1016
Alw26I	GTCTC	6 cut(s)	71, 295, 810, 1016, 1098, 1111
AlwI	GGATC	3 cut(s)	163, 176, 769
Ama87I	CYCGRG	3 cut(s)	68, 589, 769
Aor13HI	TCCGGA	1 cut(s)	1109
AoxI	GGCC	2 cut(s)	617, 929
ApeKI	GCWGC	2 cut(s)	914, 980
ApoI	RAATTY	2 cut(s)	265, 847
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	4 cut(s)	208, 310, 649, 1092
AvaI	CYCGRG	3 cut(s)	68, 589, 769
BalI	TGGCCA	1 cut(s)	619
BamHI	GGATCC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	926, 967
BccI	CCATC	5 cut(s)	67, 323, 740, 752, 1105
BceAI	ACGGC	1 cut(s)	193
BcgI	CGANNNNNNTGC	1 cut(s)	1198
BciVI	GTATCC	1 cut(s)	1114
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	6 cut(s)	71, 295, 810, 1016, 1098, 1111
BfaI	CTAG	2 cut(s)	356, 794
BfmI	CTRYAG	2 cut(s)	990, 1167
BfrI	CTTAAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	1114
BisI	GCNGC	3 cut(s)	915, 981, 1206
BlsI	GCNGC	3 cut(s)	916, 982, 1207
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	166
BmeT110I	CYCGRG	3 cut(s)	68, 589, 769
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	2 cut(s)	566, 1063
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	166
BsaBI	GATNNNNATC	3 cut(s)	781, 954, 1183
BsaHI	GRCGYC	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	1109
BsaXI	ACNNNNNCTCC	2 cut(s)	955, 985
Bsc4I	CCNNNNNNNGG	5 cut(s)	140, 405, 605, 807, 1109
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	6 cut(s)	280, 406, 620, 709, 840, 1103
Bse8I	GATNNNNATC	3 cut(s)	781, 954, 1183
BseAI	TCCGGA	1 cut(s)	1109
BseGI	GGATG	2 cut(s)	50, 763
BseJI	GATNNNNATC	3 cut(s)	781, 954, 1183
BseLI	CCNNNNNNNGG	5 cut(s)	140, 405, 605, 807, 1109
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	6 cut(s)	280, 406, 620, 709, 840, 1103
BseRI	GAGGAG	4 cut(s)	976, 990, 1068, 1071
BseXI	GCAGC	2 cut(s)	926, 967
Bsh1285I	CGRYCG	1 cut(s)	1009
BshFI	GGCC	2 cut(s)	619, 931
BsiEI	CGRYCG	1 cut(s)	1009
BsiHKCI	CYCGRG	3 cut(s)	68, 589, 769
BsiSI	CCGG	5 cut(s)	111, 134, 150, 166, 1110
BsiWI	CGTACG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	5 cut(s)	140, 405, 605, 807, 1109
BsmAI	GTCTC	6 cut(s)	71, 295, 810, 1016, 1098, 1111
BsmBI	CGTCTC	2 cut(s)	1016, 1098
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	2 cut(s)	107, 600
BsnI	GGCC	2 cut(s)	619, 931
BsoBI	CYCGRG	3 cut(s)	68, 589, 769
Bsp13I	TCCGGA	1 cut(s)	1109
Bsp143I	GATC	6 cut(s)	30, 168, 459, 761, 776, 885
BspACI	CCGC	4 cut(s)	866, 917, 1151, 1205
BspANI	GGCC	2 cut(s)	619, 931
BspCNI	CTCAG	1 cut(s)	481
BspEI	TCCGGA	1 cut(s)	1109
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	3 cut(s)	163, 176, 769
BspTI	CTTAAG	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	6 cut(s)	280, 406, 620, 709, 840, 1103
BssAI	RCCGGY	1 cut(s)	149
BssMI	GATC	6 cut(s)	30, 168, 459, 761, 776, 885
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	223
Bst2BI	CACGAG	1 cut(s)	223
Bst4CI	ACNGT	4 cut(s)	65, 608, 625, 1007
BstACI	GRCGYC	1 cut(s)	108
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	858
BstDEI	CTNAG	2 cut(s)	489, 1033
BstF5I	GGATG	2 cut(s)	50, 763
BstKTI	GATC	6 cut(s)	33, 171, 462, 764, 779, 888
BstMAI	GTCTC	6 cut(s)	71, 295, 810, 1016, 1098, 1111
BstMBI	GATC	6 cut(s)	30, 168, 459, 761, 776, 885
BstMCI	CGRYCG	1 cut(s)	1009
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 446, 986, 1157
BstNSI	RCATGY	2 cut(s)	87, 1020
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	2 cut(s)	990, 1167
BstV1I	GCAGC	2 cut(s)	926, 967
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	1114
BsuRI	GGCC	2 cut(s)	619, 931
BtsCI	GGATG	2 cut(s)	50, 763
BtsIMutI	CAGTG	2 cut(s)	399, 716
Cac8I	GCNNGC	1 cut(s)	858
Cfr10I	RCCGGY	1 cut(s)	149
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	4 cut(s)	162, 220, 247, 609
CviAII	CATG	6 cut(s)	84, 721, 765, 802, 908, 1017
CviQI	GTAC	4 cut(s)	162, 220, 247, 609
DdeI	CTNAG	2 cut(s)	489, 1033
DpnI	GATC	6 cut(s)	32, 170, 461, 763, 778, 887
DpnII	GATC	6 cut(s)	30, 168, 459, 761, 776, 885
DrdI	GACNNNNNNGTC	1 cut(s)	1034
DseDI	GACNNNNNNGTC	1 cut(s)	1034
EaeI	YGGCCR	1 cut(s)	617
Eco57I	CTGAAG	1 cut(s)	714
Eco88I	CYCGRG	3 cut(s)	68, 589, 769
EcoRI	GAATTC	1 cut(s)	847
EcoT22I	ATGCAT	1 cut(s)	559
Esp3I	CGTCTC	2 cut(s)	1016, 1098
FaeI	CATG	6 cut(s)	87, 724, 768, 805, 911, 1020
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	6 cut(s)	83, 720, 764, 801, 907, 1016
FauI	CCCGC	2 cut(s)	910, 1144
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	915, 981, 1206
FokI	GGATG	2 cut(s)	37, 770
Fsp4HI	GCNGC	3 cut(s)	915, 981, 1206
FspBI	CTAG	2 cut(s)	356, 794
GluI	GCNGC	3 cut(s)	915, 981, 1206
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	619, 931
HapII	CCGG	5 cut(s)	111, 134, 150, 166, 1110
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	6 cut(s)	87, 724, 768, 805, 911, 1020
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	8 cut(s)	9, 301, 311, 476, 772, 782, 1163, 1210
HpaII	CCGG	5 cut(s)	111, 134, 150, 166, 1110
HphI	GGTGA	4 cut(s)	208, 310, 649, 1092
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	8 cut(s)	27, 490, 694, 781, 825, 846, 960, 1086
Hpy188III	TCNNGA	8 cut(s)	68, 70, 305, 473, 561, 589, 591, 1110
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	5 cut(s)	64, 670, 689, 748, 1111
HpyCH4III	ACNGT	4 cut(s)	65, 608, 625, 1007
HpyCH4V	TGCA	3 cut(s)	449, 557, 1044
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 446, 986, 1157
HpyF3I	CTNAG	2 cut(s)	489, 1033
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	6 cut(s)	87, 724, 768, 805, 911, 1020
Kpn2I	TCCGGA	1 cut(s)	1109
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	6 cut(s)	30, 168, 459, 761, 776, 885
LmnI	GCTCC	2 cut(s)	977, 1081
Lsp1109I	GCAGC	2 cut(s)	926, 967
LweI	GCATC	2 cut(s)	566, 1063
MaeI	CTAG	2 cut(s)	356, 794
MaeIII	GTNAC	3 cut(s)	496, 579, 1025
MalI	GATC	6 cut(s)	32, 170, 461, 763, 778, 887
MboI	GATC	6 cut(s)	30, 168, 459, 761, 776, 885
MboII	GAAGA	5 cut(s)	320, 524, 777, 780, 1136
MflI	RGATCY	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	619
MluCI	AATT	6 cut(s)	13, 241, 265, 715, 847, 871
MluNI	TGGCCA	1 cut(s)	619
MlyI	GAGTC	3 cut(s)	305, 781, 1204
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	9 cut(s)	186, 338, 398, 886, 954, 968, 1089, 1092, 1106
Mox20I	TGGCCA	1 cut(s)	619
Mph1103I	ATGCAT	1 cut(s)	559
MroI	TCCGGA	1 cut(s)	1109
MscI	TGGCCA	1 cut(s)	619
MseI	TTAA	6 cut(s)	21, 180, 213, 330, 417, 453
Msp20I	TGGCCA	1 cut(s)	619
MspA1I	CMGCKG	1 cut(s)	917
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	5 cut(s)	111, 134, 150, 166, 1110
MspR9I	CCNGG	1 cut(s)	166
Mva1269I	GAATGC	2 cut(s)	107, 600
MwoI	GCNNNNNNNGC	4 cut(s)	269, 446, 986, 1157
NciI	CCSGG	1 cut(s)	166
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	6 cut(s)	30, 168, 459, 761, 776, 885
NlaIII	CATG	6 cut(s)	87, 724, 768, 805, 911, 1020
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	1025
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	2 cut(s)	87, 1020
PaeR7I	CTCGAG	3 cut(s)	68, 589, 769
PciI	ACATGT	2 cut(s)	83, 1016
PcsI	WCGNNNNNNNCGW	1 cut(s)	596
PctI	GAATGC	2 cut(s)	107, 600
PfeI	GAWTC	5 cut(s)	9, 301, 476, 782, 1163
Pfl23II	CGTACG	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	916, 982, 1207
PleI	GAGTC	3 cut(s)	305, 780, 1204
PpsI	GAGTC	3 cut(s)	305, 780, 1204
PscI	ACATGT	2 cut(s)	83, 1016
PspLI	CGTACG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	170
PspXI	VCTCGAGB	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	4 cut(s)	163, 221, 248, 610
RsaNI	GTAC	4 cut(s)	162, 220, 247, 609
SaqAI	TTAA	6 cut(s)	21, 180, 213, 330, 417, 453
SatI	GCNGC	3 cut(s)	915, 981, 1206
Sau3AI	GATC	6 cut(s)	30, 168, 459, 761, 776, 885
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	3 cut(s)	305, 781, 1204
ScrFI	CCNGG	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	566, 1063
SfcI	CTRYAG	2 cut(s)	990, 1167
Sfr274I	CTCGAG	3 cut(s)	68, 589, 769
SlaI	CTCGAG	3 cut(s)	68, 589, 769
SmlI	CTYRAG	4 cut(s)	68, 329, 589, 769
SmoI	CTYRAG	4 cut(s)	68, 329, 589, 769
Sse9I	AATT	6 cut(s)	13, 241, 265, 715, 847, 871
SsiI	CCGC	4 cut(s)	866, 917, 1151, 1205
SspMI	CTAG	2 cut(s)	356, 794
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	4 cut(s)	65, 608, 625, 1007
TaqI	TCGA	6 cut(s)	69, 92, 590, 770, 775, 888
TaqII	GACCGA	1 cut(s)	798
TasI	AATT	6 cut(s)	13, 241, 265, 715, 847, 871
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	1208
TfiI	GAWTC	5 cut(s)	9, 301, 476, 782, 1163
Tru1I	TTAA	6 cut(s)	21, 180, 213, 330, 417, 453
Tru9I	TTAA	6 cut(s)	21, 180, 213, 330, 417, 453
TscAI	CASTG	2 cut(s)	406, 716
TseFI	GTSAC	1 cut(s)	1025
TseI	GCWGC	2 cut(s)	914, 980
Tsp45I	GTSAC	1 cut(s)	1025
TspDTI	ATGAA	5 cut(s)	270, 767, 924, 928, 1011
TspGWI	ACGGA	2 cut(s)	870, 1144
TspRI	CASTG	2 cut(s)	406, 716
Vha464I	CTTAAG	1 cut(s)	329
XapI	RAATTY	2 cut(s)	265, 847
XceI	RCATGY	2 cut(s)	87, 1020
XhoI	CTCGAG	3 cut(s)	68, 589, 769
XspI	CTAG	2 cut(s)	356, 794
ZrmI	AGTACT	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.