MD02G1173900.v1.1

PI-PLC X domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
15293701 .. 15298060
4360 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1173900.v1.1.491

Sequence Viewer

Length: 1245 bp
ATGGCAACTTTATTAACTAATCTCCAGCTTCAAGCTCTCTTCATTGCAATTTGCCTATTTTCTTCCTCCTTGTGTCTCCAGATCGGAGAGACGTGCTCGAAAGACAGCGACTGCGACGCCGGTCTGAGCTGCCAAACCTGCGCTGCAAATGGCAACACCCGACCCAGATGCACCCGGATTCAACCCACCAGTCCCACATCAAAGGTGAAAGGTCTGCCATTCAATCGGTATTCATGGCTAACCACCCACAACTCATACGCTCAAGCTGGAGTTAGGTCCGCCACCGGTTCCTTAATTGTTGCTCCCATGAACCAGAACGACACCGTTGCCAACCAACTCAAAAATGGTGTCCGAGGGTTGATGCTGGATATGTATGACTTCAACAACGACGTCTGGTTATGTCACTCGTATGGTGGCAAATGTTCCAACTTCACTGCATTTAAACCTGCTATTAACGTGCTGAGAGATATTAAAACCTTTTTGGAATCCAACCCCTCAGAGATTGTCACCATTTTTATCGAAGATTATGTGGAATCTCCATCGGGCCTGACAAAGGTCTTTGAGGCAGCTGACCTCAAAAAATTTTGGTTCCCACTTGCTCAGATGCCAAAGAATGGGAGCGATTGGCCAACTGTTGATGATATGGTCCAGAATAATCAGCGGTTGGTGGTCTTCACCTCTAAGAAAGCTAAGGAGGCTTCAGAGGGAATTGCTTATGAGTGGAACTATGTTGTCGAAAATCAATGTAAATGGAATGGAGGGATGGTACCTGGTTCATGTCCAAGTCGTGCTGAATCATCTCCAATGGACACAATGTCTAAATCACTAGTTCTCGTGAACTATTTTCGCGATCTTCCAAATGCATCAGCATCTTGCATGGAAAATTCAGCTCCCTTACTGAGCGCGTCGAAAACTTGCTATGAAGCAGCTGGGAAACGGTGGCCAAACTTCATTGCTGTTGATTATTATGAGAAAAGTGATGGTGGTGGTGCTCCAGAAGCAGTGGATGAAGCCAGTGGCCATCTGATATGTGGCTGTGACAGAATCACTTACTGCAAGGTAAATGGTGGTAACGTTACATTTGGTTCATGCGACGTCCCAAAACTTGCTCCCCCGCCACCTGCTGCCGCCACCACCACATCCTCTCAACCAGGTTCCGGTAACTTTGTTTCCCGGGGCAAATCAGTCCAGTTGTTGTGGTTGTGCGGAACAATTTTGGCTACAACTCTCTCAATTCAGATGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

44.86

Weight (kDa)

6.34

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 61 - 353 9.8e-158 PI-PLC-like catalytic domain
PI-PLC_X PF26146 102 - 327 1.5e-22 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1129
AatII GACGTC 2 cut(s) 393, 1098
Acc36I ACCTGC 3 cut(s) 146, 454, 1129
Acc65I GGTACC 1 cut(s) 766
AccB1I GGYRCC 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 614
AccII CGCG 2 cut(s) 849, 905
AciI CCGC 5 cut(s) 279, 661, 1115, 1128, 1206
AclI AACGTT 1 cut(s) 1074
AcoI YGGCCR 3 cut(s) 626, 941, 1018
AcsI RAATTY 2 cut(s) 581, 883
AcuI CTGAAG 1 cut(s) 684
AcyI GRCGYC 3 cut(s) 117, 390, 1095
AfaI GTAC 1 cut(s) 768
AfiI CCNNNNNNNGG 3 cut(s) 553, 614, 1157
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 4 cut(s) 32, 182, 223, 382
AhdI GACNNNNNGTC 1 cut(s) 814
AhlI ACTAGT 1 cut(s) 826
AjiI CACGTC 1 cut(s) 93
AjnI CCWGG 2 cut(s) 769, 1150
AluBI AGCT 8 cut(s) 28, 35, 129, 266, 569, 689, 890, 929
AluI AGCT 8 cut(s) 28, 35, 129, 266, 569, 689, 890, 929
Alw21I GWGCWC 2 cut(s) 98, 994
Alw26I GTCTC 2 cut(s) 80, 83
AlwNI CAGNNNCTG 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 1173
AoxI GGCC 4 cut(s) 544, 626, 941, 1018
ApeKI GCWGC 5 cut(s) 129, 143, 566, 926, 1124
ApoI RAATTY 2 cut(s) 581, 883
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AsiGI ACCGGT 1 cut(s) 284
Asp718I GGTACC 1 cut(s) 766
AspLEI GCGC 2 cut(s) 143, 905
AspS9I GGNCC 3 cut(s) 276, 544, 646
AsuC2I CCSGG 3 cut(s) 175, 1174, 1175
AsuHPI GGTGA 3 cut(s) 217, 499, 667
AvaI CYCGRG 1 cut(s) 1173
AvaII GGWCC 2 cut(s) 276, 646
BalI TGGCCA 3 cut(s) 628, 943, 1020
BanI GGYRCC 1 cut(s) 766
BauI CACGAG 1 cut(s) 833
BbsI GAAGAC 1 cut(s) 664
Bbv12I GWGCWC 2 cut(s) 98, 994
BbvI GCAGC 5 cut(s) 116, 130, 578, 938, 1111
BccI CCATC 4 cut(s) 547, 757, 974, 1029
BcgI CGANNNNNNTGC 4 cut(s) 150, 184, 308, 342
BciT130I CCWGG 2 cut(s) 771, 1152
BcnI CCSGG 3 cut(s) 175, 1174, 1175
BcoDI GTCTC 2 cut(s) 80, 83
BcuI ACTAGT 1 cut(s) 826
BfaI CTAG 1 cut(s) 827
BfuAI ACCTGC 3 cut(s) 146, 454, 1129
BisI GCNGC 6 cut(s) 130, 144, 567, 927, 1125, 1128
BlsI GCNGC 6 cut(s) 131, 145, 568, 928, 1126, 1129
Bme1390I CCNGG 5 cut(s) 175, 771, 1152, 1174, 1175
Bme18I GGWCC 2 cut(s) 276, 646
BmeRI GACNNNNNGTC 1 cut(s) 814
BmeT110I CYCGRG 1 cut(s) 1173
BmgBI CACGTC 1 cut(s) 93
BmgT120I GGNCC 3 cut(s) 276, 544, 646
BmiI GGNNCC 4 cut(s) 289, 590, 768, 1156
BmrFI CCNGG 5 cut(s) 175, 771, 1152, 1174, 1175
BmsI GCATC 5 cut(s) 158, 351, 594, 872, 878
BoxI GACNNNNGTC 2 cut(s) 120, 554
BpiI GAAGAC 1 cut(s) 664
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpmI CTGGAG 4 cut(s) 8, 62, 288, 978
Bpu10I CCTNAGC 1 cut(s) 690
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 3 cut(s) 175, 1174, 1175
BsaHI GRCGYC 3 cut(s) 117, 390, 1095
BsaJI CCNNGG 3 cut(s) 352, 1173, 1174
BsaWI WCCGGW 2 cut(s) 284, 1157
BsaXI ACNNNNNCTCC 2 cut(s) 750, 780
Bsc4I CCNNNNNNNGG 3 cut(s) 553, 614, 1157
Bse118I RCCGGY 2 cut(s) 119, 284
Bse1I ACTGG 3 cut(s) 189, 1014, 1189
Bse3DI GCAATG 2 cut(s) 42, 951
BseBI CCWGG 2 cut(s) 771, 1152
BseDI CCNNGG 3 cut(s) 352, 1173, 1174
BseGI GGATG 3 cut(s) 768, 1012, 1139
BseLI CCNNNNNNNGG 3 cut(s) 553, 614, 1157
BseMI GCAATG 2 cut(s) 42, 951
BseMII CTCAG 5 cut(s) 116, 452, 510, 614, 890
BseNI ACTGG 3 cut(s) 189, 1014, 1189
BseXI GCAGC 5 cut(s) 116, 130, 578, 938, 1111
BseYI CCCAGC 1 cut(s) 929
Bsh1236I CGCG 2 cut(s) 849, 905
BshFI GGCC 4 cut(s) 546, 628, 943, 1020
BshNI GGYRCC 1 cut(s) 766
BshTI ACCGGT 1 cut(s) 284
BsiHKAI GWGCWC 2 cut(s) 98, 994
BsiHKCI CYCGRG 1 cut(s) 1173
BsiSI CCGG 5 cut(s) 120, 175, 285, 1158, 1174
BslFI GGGAC 2 cut(s) 177, 1082
BslI CCNNNNNNNGG 3 cut(s) 553, 614, 1157
BsmAI GTCTC 2 cut(s) 80, 83
BsmBI CGTCTC 1 cut(s) 83
BsmFI GGGAC 2 cut(s) 177, 1082
BsnI GGCC 4 cut(s) 546, 628, 943, 1020
BsoBI CYCGRG 1 cut(s) 1173
Bsp1286I GDGCHC 2 cut(s) 98, 994
Bsp143I GATC 2 cut(s) 81, 850
Bsp68I TCGCGA 1 cut(s) 849
BspACI CCGC 5 cut(s) 279, 661, 1115, 1128, 1206
BspANI GGCC 4 cut(s) 546, 628, 943, 1020
BspCNI CTCAG 5 cut(s) 117, 453, 509, 613, 891
BspFNI CGCG 2 cut(s) 849, 905
BspLI GGNNCC 4 cut(s) 289, 590, 768, 1156
BspMI ACCTGC 3 cut(s) 146, 454, 1129
BspT107I GGYRCC 1 cut(s) 766
BsrDI GCAATG 2 cut(s) 42, 951
BsrFI RCCGGY 2 cut(s) 119, 284
BsrI ACTGG 3 cut(s) 189, 1014, 1189
BssAI RCCGGY 2 cut(s) 119, 284
BssECI CCNNGG 3 cut(s) 352, 1173, 1174
BssMI GATC 2 cut(s) 81, 850
BssNI GRCGYC 3 cut(s) 117, 390, 1095
BssSI CACGAG 1 cut(s) 833
Bst2BI CACGAG 1 cut(s) 833
Bst2UI CCWGG 2 cut(s) 771, 1152
Bst4CI ACNGT 3 cut(s) 325, 634, 939
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 3 cut(s) 117, 390, 1095
BstDEI CTNAG 7 cut(s) 125, 461, 496, 600, 681, 690, 899
BstENI CCTNNNNNAGG 1 cut(s) 551
BstF5I GGATG 3 cut(s) 768, 1012, 1139
BstFNI CGCG 2 cut(s) 849, 905
BstHHI GCGC 2 cut(s) 143, 905
BstKTI GATC 2 cut(s) 84, 853
BstMAI GTCTC 2 cut(s) 80, 83
BstMBI GATC 2 cut(s) 81, 850
BstMWI GCNNNNNNNGC 3 cut(s) 138, 695, 998
BstNI CCWGG 2 cut(s) 771, 1152
BstPAI GACNNNNGTC 2 cut(s) 120, 554
BstSCI CCNGG 5 cut(s) 173, 769, 1150, 1172, 1173
BstUI CGCG 2 cut(s) 849, 905
BstV1I GCAGC 5 cut(s) 116, 130, 578, 938, 1111
BstV2I GAAGAC 1 cut(s) 664
BsuRI GGCC 4 cut(s) 546, 628, 943, 1020
BtrI CACGTC 1 cut(s) 93
BtsCI GGATG 3 cut(s) 768, 1012, 1139
BtsI GCAGTG 2 cut(s) 432, 1008
BtsIMutI CAGTG 3 cut(s) 432, 1008, 1021
BtuMI TCGCGA 1 cut(s) 849
BveI ACCTGC 3 cut(s) 146, 454, 1129
CaiI CAGNNNCTG 1 cut(s) 111
CfoI GCGC 2 cut(s) 143, 905
Cfr10I RCCGGY 2 cut(s) 119, 284
Cfr13I GGNCC 3 cut(s) 276, 544, 646
Cfr9I CCCGGG 1 cut(s) 1173
CseI GACGC 2 cut(s) 125, 894
CsiI ACCWGGT 2 cut(s) 769, 1150
Csp6I GTAC 1 cut(s) 767
CspAI ACCGGT 1 cut(s) 284
CviAII CATG 5 cut(s) 234, 307, 777, 877, 1089
CviQI GTAC 1 cut(s) 767
DdeI CTNAG 7 cut(s) 125, 461, 496, 600, 681, 690, 899
DpnI GATC 2 cut(s) 83, 852
DpnII GATC 2 cut(s) 81, 850
DraI TTTAAA 1 cut(s) 442
DriI GACNNNNNGTC 1 cut(s) 814
EaeI YGGCCR 3 cut(s) 626, 941, 1018
Eam1104I CTCTTC 1 cut(s) 44
Eam1105I GACNNNNNGTC 1 cut(s) 814
EarI CTCTTC 1 cut(s) 44
EciI GGCGGA 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 276, 646
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 1173
EcoNI CCTNNNNNAGG 1 cut(s) 551
EcoRII CCWGG 2 cut(s) 769, 1150
EcoT22I ATGCAT 1 cut(s) 865
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 5 cut(s) 237, 310, 780, 880, 1092
FaqI GGGAC 2 cut(s) 177, 1082
FatI CATG 5 cut(s) 233, 306, 776, 876, 1088
FauI CCCGC 1 cut(s) 1122
Fnu4HI GCNGC 6 cut(s) 130, 144, 567, 927, 1125, 1128
FokI GGATG 3 cut(s) 775, 1019, 1126
Fsp4HI GCNGC 6 cut(s) 130, 144, 567, 927, 1125, 1128
FspBI CTAG 1 cut(s) 827
GlaI GCGC 2 cut(s) 142, 904
GluI GCNGC 6 cut(s) 130, 144, 567, 927, 1125, 1128
GsaI CCCAGC 1 cut(s) 933
GsuI CTGGAG 4 cut(s) 8, 62, 288, 978
HaeIII GGCC 4 cut(s) 546, 628, 943, 1020
HapII CCGG 5 cut(s) 120, 175, 285, 1158, 1174
HgaI GACGC 2 cut(s) 125, 894
HhaI GCGC 2 cut(s) 143, 905
Hin1I GRCGYC 3 cut(s) 117, 390, 1095
Hin1II CATG 5 cut(s) 237, 310, 780, 880, 1092
Hin6I GCGC 2 cut(s) 141, 903
HinP1I GCGC 2 cut(s) 141, 903
HinfI GANTC 5 cut(s) 178, 485, 533, 794, 1044
HpaII CCGG 5 cut(s) 120, 175, 285, 1158, 1174
HphI GGTGA 3 cut(s) 217, 499, 667
Hpy166II GTNNAC 1 cut(s) 838
Hpy188I TCNGA 8 cut(s) 86, 126, 353, 499, 603, 703, 1026, 1239
Hpy188III TCNNGA 5 cut(s) 79, 649, 835, 848, 995
Hpy8I GTNNAC 1 cut(s) 838
Hpy99I CGWCG 4 cut(s) 119, 392, 910, 1097
HpyCH4III ACNGT 3 cut(s) 325, 634, 939
HpyCH4IV ACGT 5 cut(s) 92, 390, 456, 1074, 1095
HpyCH4V TGCA 7 cut(s) 47, 146, 171, 437, 863, 876, 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 695, 998
HpyF3I CTNAG 7 cut(s) 125, 461, 496, 600, 681, 690, 899
HpySE526I ACGT 5 cut(s) 92, 390, 456, 1074, 1095
Hsp92I GRCGYC 3 cut(s) 117, 390, 1095
Hsp92II CATG 5 cut(s) 237, 310, 780, 880, 1092
HspAI GCGC 2 cut(s) 141, 903
KpnI GGTACC 1 cut(s) 770
Kzo9I GATC 2 cut(s) 81, 850
LmnI GCTCC 5 cut(s) 307, 618, 895, 997, 1114
Lsp1109I GCAGC 5 cut(s) 116, 130, 578, 938, 1111
LweI GCATC 5 cut(s) 158, 351, 594, 872, 878
MabI ACCWGGT 2 cut(s) 769, 1150
MaeI CTAG 1 cut(s) 827
MaeII ACGT 5 cut(s) 92, 390, 456, 1074, 1095
MaeIII GTNAC 6 cut(s) 401, 505, 1037, 1070, 1075, 1160
MalI GATC 2 cut(s) 83, 852
MboI GATC 2 cut(s) 81, 850
MboII GAAGA 5 cut(s) 31, 54, 533, 664, 845
MhlI GDGCHC 2 cut(s) 98, 994
MlsI TGGCCA 3 cut(s) 628, 943, 1020
MluCI AATT 7 cut(s) 48, 294, 581, 708, 883, 1212, 1233
MluNI TGGCCA 3 cut(s) 628, 943, 1020
MmeI TCCRAC 2 cut(s) 450, 513
Mox20I TGGCCA 3 cut(s) 628, 943, 1020
Mph1103I ATGCAT 1 cut(s) 865
MscI TGGCCA 3 cut(s) 628, 943, 1020
MseI TTAA 5 cut(s) 14, 293, 441, 453, 471
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 3 cut(s) 628, 943, 1020
MspA1I CMGCKG 3 cut(s) 569, 661, 929
MspI CCGG 5 cut(s) 120, 175, 285, 1158, 1174
MspR9I CCNGG 5 cut(s) 175, 771, 1152, 1174, 1175
MvaI CCWGG 2 cut(s) 771, 1152
MvnI CGCG 2 cut(s) 849, 905
MwoI GCNNNNNNNGC 3 cut(s) 138, 695, 998
NciI CCSGG 3 cut(s) 175, 1174, 1175
NdeII GATC 2 cut(s) 81, 850
NlaIII CATG 5 cut(s) 237, 310, 780, 880, 1092
NlaIV GGNNCC 4 cut(s) 289, 590, 768, 1156
NmuCI GTSAC 3 cut(s) 401, 505, 1037
NruI TCGCGA 1 cut(s) 849
NsiI ATGCAT 1 cut(s) 865
PaqCI CACCTGC 1 cut(s) 1129
PfeI GAWTC 5 cut(s) 178, 485, 533, 794, 1044
PflMI CCANNNNNTGG 1 cut(s) 614
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 6 cut(s) 131, 145, 568, 928, 1126, 1129
PshAI GACNNNNGTC 2 cut(s) 120, 554
Psp1406I AACGTT 1 cut(s) 1074
Psp6I CCWGG 2 cut(s) 769, 1150
PspFI CCCAGC 1 cut(s) 929
PspGI CCWGG 2 cut(s) 769, 1150
PspN4I GGNNCC 4 cut(s) 289, 590, 768, 1156
PspPI GGNCC 3 cut(s) 276, 544, 646
PstNI CAGNNNCTG 1 cut(s) 111
PvuII CAGCTG 2 cut(s) 569, 929
RruI TCGCGA 1 cut(s) 849
RsaI GTAC 1 cut(s) 768
RsaNI GTAC 1 cut(s) 767
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 5 cut(s) 14, 293, 441, 453, 471
SatI GCNGC 6 cut(s) 130, 144, 567, 927, 1125, 1128
Sau3AI GATC 2 cut(s) 81, 850
Sau96I GGNCC 3 cut(s) 276, 544, 646
ScrFI CCNGG 5 cut(s) 175, 771, 1152, 1174, 1175
SduI GDGCHC 2 cut(s) 98, 994
SexAI ACCWGGT 2 cut(s) 769, 1150
SfaNI GCATC 5 cut(s) 158, 351, 594, 872, 878
SinI GGWCC 2 cut(s) 276, 646
SmaI CCCGGG 1 cut(s) 1175
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
SpeI ACTAGT 1 cut(s) 826
Sse9I AATT 7 cut(s) 48, 294, 581, 708, 883, 1212, 1233
SsiI CCGC 5 cut(s) 279, 661, 1115, 1128, 1206
SspMI CTAG 1 cut(s) 827
StyD4I CCNGG 5 cut(s) 173, 769, 1150, 1172, 1173
TaaI ACNGT 3 cut(s) 325, 634, 939
TaiI ACGT 5 cut(s) 95, 393, 459, 1077, 1098
TaqI TCGA 4 cut(s) 98, 519, 735, 908
TasI AATT 7 cut(s) 48, 294, 581, 708, 883, 1212, 1233
TauI GCSGC 1 cut(s) 1130
TfiI GAWTC 5 cut(s) 178, 485, 533, 794, 1044
Tru1I TTAA 5 cut(s) 14, 293, 441, 453, 471
Tru9I TTAA 5 cut(s) 14, 293, 441, 453, 471
TscAI CASTG 3 cut(s) 439, 1008, 1021
TseFI GTSAC 3 cut(s) 401, 505, 1037
TseI GCWGC 5 cut(s) 129, 143, 566, 926, 1124
Tsp45I GTSAC 3 cut(s) 401, 505, 1037
TspDTI ATGAA 8 cut(s) 31, 222, 323, 765, 936, 940, 1023, 1077
TspMI CCCGGG 1 cut(s) 1173
TspRI CASTG 3 cut(s) 439, 1008, 1021
Van91I CCANNNNNTGG 1 cut(s) 614
VpaK11BI GGWCC 2 cut(s) 276, 646
XagI CCTNNNNNAGG 1 cut(s) 551
XapI RAATTY 2 cut(s) 581, 883
XcmI CCANNNNNNNNNTGG 2 cut(s) 341, 1028
XmaI CCCGGG 1 cut(s) 1173
XspI CTAG 1 cut(s) 827
ZraI GACGTC 2 cut(s) 391, 1096
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.