Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005850

Physical Location & Seq

Genomic Coordinates Forward (+)

17160632 .. 17164754

Gene Structure 4123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGAGCTTTCTCAAAAAGTCCCAAACTTCAAGTTCTGTTCATCATAGCTTGCCTATTCTCTCCCTGTATCAGCCTCAAGATTGGAGAGACGTGTTCCAAAGACACAGATTGCGACGCCGGTTTAAGCTGCCAAACATGCGCTGCAAATGGTAATACCCGACCCAGATGTACCCGGATTCAACCCACCAATCCTACATCTAAGGTGAAAGGTCTTCCCTTTAATAATTACACATGGCTTACGACCCACAACTCGTACGCTCAAGCAGGGGTGCGGTCGTCCACCGGATCGTTGATTATTGCTCCGATGAATCAGAACGACACCGTTACATCTCAGCTCAAAAATGGAGTTCGAGGATTTATGTTGGATATGTATGACTTCAACAACGATATCTGGTTATGTCACTCAACTGGGGGCAAATGTTACAATTTCACAGCATTTAGACCTGCTCTTGACGTGCTGAAAGAAATTCGAGCATTTTTGGAAGCAAATCCCTCAGAAATTGTCACAATTTTTATTGAGGATTATGTAACATCTCCATCAGGCTTGTCAAAAGTCTTTGATTCAGCTGGTTTAAAGACCTATATGTTCCCCCTGGCTCGGATGCCAAAGGATGGAAATGATTGGCCAACTGTTGATGATATGGCTAAAAACAATCAGAGGTTGGTGGTCTTCACCTCTAAGTCATCGAAGGAGGCCTCAGAGGGAATTGCTTACGAGTGGAACTATGTCGTAGAAAATCAATATGGAAATGGCGGGATGGTACCTAATTCATGTCCGAATCGTGCTGAATCATCTCCCATGAACACAACATCAAAGTCACTAGTTCTGGTGAACTACTTCCGTGATATTCCCAATGCATCAGCAACTTGCGCAGACAATTCAGCTCCATTACTGAGCGAGATCAAAACTTGTTATGATGCAGCTGGGAAACGGTGGCCAAACTTTATTGCCGTTGATTATTACCAGAAAAGTGATGGCGGGGGAGCTGCTGAAGCAGTGGATCAATCAAATGGTCAACTGACATGTGGGTGTGACAGCATTACATATTGCAAGGTGAATGCTACAACTGGAAATGCTACATTTGGTTCATGTGATGTCCCAAAACTTGCTCCACCGCCACCTGCTTCCCTCGCCAGCACACCTCCTTCAGGTCCTAGTAGTAACTTTGCTCCTCGGAATAGCAAATCAATCCTGTTGAGGTGGTTGTGTGGAACAATTTTGGCTGCTACTCTCTCAATGCGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

416

Amino Acids

44.96

Weight (kDa)

8.05

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	61 - 352	6.1e-162	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	100 - 328	1.3e-25	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36945
fragaria_vesca	FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200
malus_domestica	MD02G1173900.v1.1
prunus_persica	Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1
pyrus_communis	pycom02g14020 pycom15g24810
rosa_chinensis	RchiOBHm_Chr2g0105901
rosa_laevigata	RLG00000017468
rosa_multiflora	Rmu_sc0004367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00137590 Rroxscaffold_2G00137740
rosa_rugosa	Rorug02G0131700 Rorug02G0131800
rosa_samantha	Rh2AG182300 Rh2BG192300 Rh2CG186900 Rh2DG188800
rosa_wichuraiana	Rw2G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1132
Acc16I	TGCGCA	1 cut(s)	874
Acc36I	ACCTGC	2 cut(s)	454, 1132
Acc65I	GGTACC	1 cut(s)	763
AccB1I	GGYRCC	1 cut(s)	763
AccB7I	CCANNNNNTGG	1 cut(s)	614
AciI	CCGC	5 cut(s)	274, 756, 981, 1118, 1243
AclWI	GGATC	2 cut(s)	295, 1011
AcoI	YGGCCR	2 cut(s)	626, 938
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	2 cut(s)	1014, 1134
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	3 cut(s)	172, 257, 765
AfiI	CCNNNNNNNGG	3 cut(s)	600, 614, 1151
AflIII	ACRYGT	2 cut(s)	92, 1025
AgsI	TTSAA	3 cut(s)	32, 182, 382
AhlI	ACTAGT	1 cut(s)	823
AjiI	CACGTC	2 cut(s)	93, 457
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	8 cut(s)	8, 50, 129, 337, 569, 887, 926, 989
AluI	AGCT	8 cut(s)	8, 50, 129, 337, 569, 887, 926, 989
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	295, 1011
AoxI	GGCC	3 cut(s)	626, 696, 938
ApeKI	GCWGC	5 cut(s)	129, 143, 923, 989, 1226
ApoI	RAATTY	1 cut(s)	468
Asp700I	GAANNNNTTC	1 cut(s)	839
Asp718I	GGTACC	1 cut(s)	763
AspLEI	GCGC	2 cut(s)	143, 875
AspS9I	GGNCC	1 cut(s)	1154
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	4 cut(s)	217, 667, 844, 1069
AvaII	GGWCC	1 cut(s)	1154
BalI	TGGCCA	2 cut(s)	628, 940
BanI	GGYRCC	1 cut(s)	763
BbsI	GAAGAC	2 cut(s)	206, 664
BbvI	GCAGC	5 cut(s)	116, 130, 935, 976, 1213
BccI	CCATC	4 cut(s)	547, 608, 754, 971
BceAI	ACGGC	1 cut(s)	938
BciT130I	CCWGG	1 cut(s)	596
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	83
BcuI	ACTAGT	1 cut(s)	823
BfaI	CTAG	2 cut(s)	824, 1158
BfuAI	ACCTGC	2 cut(s)	454, 1132
BisI	GCNGC	5 cut(s)	130, 144, 924, 990, 1227
BlsI	GCNGC	5 cut(s)	131, 145, 925, 991, 1228
Bme1390I	CCNGG	2 cut(s)	175, 596
Bme18I	GGWCC	1 cut(s)	1154
BmgBI	CACGTC	2 cut(s)	93, 457
BmgT120I	GGNCC	1 cut(s)	1154
BmiI	GGNNCC	1 cut(s)	765
BmrFI	CCNGG	2 cut(s)	175, 596
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	3 cut(s)	594, 869, 910
BmuI	ACTGGG	1 cut(s)	420
BpiI	GAAGAC	2 cut(s)	206, 664
BpuEI	CTTGAG	2 cut(s)	62, 246
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	594, 1175
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	3 cut(s)	600, 614, 1151
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	415, 1075
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	594, 1175
BseGI	GGATG	3 cut(s)	609, 619, 765
BseLI	CCNNNNNNNGG	3 cut(s)	600, 614, 1151
BseMII	CTCAG	4 cut(s)	347, 510, 714, 887
BseNI	ACTGG	2 cut(s)	415, 1075
BseRI	GAGGAG	1 cut(s)	1164
BseXI	GCAGC	5 cut(s)	116, 130, 935, 976, 1213
BseYI	CCCAGC	1 cut(s)	926
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	3 cut(s)	628, 698, 940
BshNI	GGYRCC	1 cut(s)	763
BsiEI	CGRYCG	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	120, 175, 285
BsiWI	CGTACG	1 cut(s)	255
BslFI	GGGAC	2 cut(s)	6, 1085
BslI	CCNNNNNNNGG	3 cut(s)	600, 614, 1151
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	6, 1085
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	3 cut(s)	628, 698, 940
Bsp143I	GATC	3 cut(s)	287, 903, 1003
BspACI	CCGC	5 cut(s)	274, 756, 981, 1118, 1243
BspANI	GGCC	3 cut(s)	628, 698, 940
BspCNI	CTCAG	4 cut(s)	346, 509, 713, 888
BspLI	GGNNCC	1 cut(s)	765
BspMI	ACCTGC	2 cut(s)	454, 1132
BspPI	GGATC	2 cut(s)	295, 1011
BspT107I	GGYRCC	1 cut(s)	763
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	415, 1075
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	594, 1175
BssMI	GATC	3 cut(s)	287, 903, 1003
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	3 cut(s)	325, 634, 936
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	52, 1138
BstDEI	CTNAG	6 cut(s)	201, 333, 496, 681, 700, 896
BstENI	CCTNNNNNAGG	1 cut(s)	1149
BstF5I	GGATG	3 cut(s)	609, 619, 765
BstHHI	GCGC	2 cut(s)	143, 875
BstKTI	GATC	3 cut(s)	290, 906, 1006
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	3 cut(s)	287, 903, 1003
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 872, 995, 1133
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	2 cut(s)	141, 1029
BstSCI	CCNGG	2 cut(s)	173, 594
BstV1I	GCAGC	5 cut(s)	116, 130, 935, 976, 1213
BstV2I	GAAGAC	2 cut(s)	206, 664
BsuRI	GGCC	3 cut(s)	628, 698, 940
BtrI	CACGTC	2 cut(s)	93, 457
BtsCI	GGATG	3 cut(s)	609, 619, 765
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	1 cut(s)	1005
BveI	ACCTGC	2 cut(s)	454, 1132
Cac8I	GCNNGC	2 cut(s)	52, 1138
CfoI	GCGC	2 cut(s)	143, 875
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	1154
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	171, 256, 764
CviAII	CATG	6 cut(s)	138, 234, 774, 802, 1026, 1092
CviQI	GTAC	3 cut(s)	171, 256, 764
DdeI	CTNAG	6 cut(s)	201, 333, 496, 681, 700, 896
DpnI	GATC	3 cut(s)	289, 905, 1005
DpnII	GATC	3 cut(s)	287, 903, 1003
DraI	TTTAAA	1 cut(s)	576
EaeI	YGGCCR	2 cut(s)	626, 938
Eco147I	AGGCCT	1 cut(s)	698
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	1154
Eco57I	CTGAAG	2 cut(s)	1014, 1134
EcoNI	CCTNNNNNAGG	1 cut(s)	1149
EcoO109I	RGGNCCY	1 cut(s)	1154
EcoRII	CCWGG	1 cut(s)	594
EcoRV	GATATC	1 cut(s)	391
EcoT22I	ATGCAT	1 cut(s)	862
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	6 cut(s)	141, 237, 777, 805, 1029, 1095
FaqI	GGGAC	2 cut(s)	6, 1085
FatI	CATG	6 cut(s)	137, 233, 773, 801, 1025, 1091
FauI	CCCGC	2 cut(s)	749, 974
Fnu4HI	GCNGC	5 cut(s)	130, 144, 924, 990, 1227
FokI	GGATG	3 cut(s)	616, 626, 772
Fsp4HI	GCNGC	5 cut(s)	130, 144, 924, 990, 1227
FspBI	CTAG	2 cut(s)	824, 1158
FspI	TGCGCA	1 cut(s)	874
GlaI	GCGC	2 cut(s)	142, 874
GluI	GCNGC	5 cut(s)	130, 144, 924, 990, 1227
GsaI	CCCAGC	1 cut(s)	930
HaeIII	GGCC	3 cut(s)	628, 698, 940
HapII	CCGG	3 cut(s)	120, 175, 285
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	143, 875
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	6 cut(s)	141, 237, 777, 805, 1029, 1095
Hin6I	GCGC	2 cut(s)	141, 873
HinP1I	GCGC	2 cut(s)	141, 873
HincII	GTYRAC	1 cut(s)	1019
HindII	GTYRAC	1 cut(s)	1019
HinfI	GANTC	5 cut(s)	178, 310, 563, 781, 791
HpaII	CCGG	3 cut(s)	120, 175, 285
HphI	GGTGA	4 cut(s)	217, 667, 844, 1069
Hpy166II	GTNNAC	3 cut(s)	282, 835, 1019
Hpy188I	TCNGA	8 cut(s)	306, 315, 499, 603, 660, 703, 780, 1179
Hpy188III	TCNNGA	2 cut(s)	79, 452
Hpy8I	GTNNAC	3 cut(s)	282, 835, 1019
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	685, 1158
HpyCH4III	ACNGT	3 cut(s)	325, 634, 936
HpyCH4IV	ACGT	2 cut(s)	92, 456
HpyCH4V	TGCA	4 cut(s)	146, 860, 923, 1053
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 872, 995, 1133
HpyF3I	CTNAG	6 cut(s)	201, 333, 496, 681, 700, 896
HpySE526I	ACGT	2 cut(s)	92, 456
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	6 cut(s)	141, 237, 777, 805, 1029, 1095
HspAI	GCGC	2 cut(s)	141, 873
KpnI	GGTACC	1 cut(s)	767
Kzo9I	GATC	3 cut(s)	287, 903, 1003
LmnI	GCTCC	6 cut(s)	5, 307, 892, 986, 1117, 1177
Lsp1109I	GCAGC	5 cut(s)	116, 130, 935, 976, 1213
LweI	GCATC	3 cut(s)	594, 869, 910
MaeI	CTAG	2 cut(s)	824, 1158
MaeII	ACGT	2 cut(s)	92, 456
MaeIII	GTNAC	8 cut(s)	325, 401, 422, 505, 529, 819, 1034, 1163
MalI	GATC	3 cut(s)	289, 905, 1005
MboI	GATC	3 cut(s)	287, 903, 1003
MboII	GAAGA	2 cut(s)	206, 664
MlsI	TGGCCA	2 cut(s)	628, 940
MluCI	AATT	9 cut(s)	226, 427, 468, 501, 510, 708, 769, 880, 1218
MluNI	TGGCCA	2 cut(s)	628, 940
MmeI	TCCRAC	1 cut(s)	345
Mox20I	TGGCCA	2 cut(s)	628, 940
Mph1103I	ATGCAT	1 cut(s)	862
MroXI	GAANNNNTTC	1 cut(s)	839
MscI	TGGCCA	2 cut(s)	628, 940
MseI	TTAA	3 cut(s)	125, 222, 575
MslI	CAYNNNNRTG	1 cut(s)	1030
Msp20I	TGGCCA	2 cut(s)	628, 940
MspA1I	CMGCKG	2 cut(s)	569, 926
MspI	CCGG	3 cut(s)	120, 175, 285
MspR9I	CCNGG	2 cut(s)	175, 596
Mva1269I	GAATGC	1 cut(s)	1066
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	4 cut(s)	138, 872, 995, 1133
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	3 cut(s)	287, 903, 1003
NlaIII	CATG	6 cut(s)	141, 237, 777, 805, 1029, 1095
NlaIV	GGNNCC	1 cut(s)	765
NmuCI	GTSAC	4 cut(s)	401, 505, 819, 1034
NsbI	TGCGCA	1 cut(s)	874
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	2 cut(s)	141, 1029
PaqCI	CACCTGC	1 cut(s)	1132
PceI	AGGCCT	1 cut(s)	698
PciI	ACATGT	1 cut(s)	1025
PctI	GAATGC	1 cut(s)	1066
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	5 cut(s)	178, 310, 563, 781, 791
Pfl23II	CGTACG	1 cut(s)	255
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	5 cut(s)	131, 145, 925, 991, 1228
PpuMI	RGGWCCY	1 cut(s)	1154
PscI	ACATGT	1 cut(s)	1025
Psp5II	RGGWCCY	1 cut(s)	1154
Psp6I	CCWGG	1 cut(s)	594
PspFI	CCCAGC	1 cut(s)	926
PspGI	CCWGG	1 cut(s)	594
PspLI	CGTACG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	765
PspPI	GGNCC	1 cut(s)	1154
PspPPI	RGGWCCY	1 cut(s)	1154
PvuII	CAGCTG	2 cut(s)	569, 926
RsaI	GTAC	3 cut(s)	172, 257, 765
RsaNI	GTAC	3 cut(s)	171, 256, 764
RseI	CAYNNNNRTG	1 cut(s)	1030
SaqAI	TTAA	3 cut(s)	125, 222, 575
SatI	GCNGC	5 cut(s)	130, 144, 924, 990, 1227
Sau3AI	GATC	3 cut(s)	287, 903, 1003
Sau96I	GGNCC	1 cut(s)	1154
ScrFI	CCNGG	2 cut(s)	175, 596
SfaNI	GCATC	3 cut(s)	594, 869, 910
SinI	GGWCC	1 cut(s)	1154
SmiMI	CAYNNNNRTG	1 cut(s)	1030
SmlI	CTYRAG	2 cut(s)	77, 261
SmoI	CTYRAG	2 cut(s)	77, 261
SpeI	ACTAGT	1 cut(s)	823
Sse9I	AATT	9 cut(s)	226, 427, 468, 501, 510, 708, 769, 880, 1218
SseBI	AGGCCT	1 cut(s)	698
SsiI	CCGC	5 cut(s)	274, 756, 981, 1118, 1243
SspMI	CTAG	2 cut(s)	824, 1158
StuI	AGGCCT	1 cut(s)	698
StyD4I	CCNGG	2 cut(s)	173, 594
TaaI	ACNGT	3 cut(s)	325, 634, 936
TaiI	ACGT	2 cut(s)	95, 459
TaqI	TCGA	3 cut(s)	352, 472, 689
TasI	AATT	9 cut(s)	226, 427, 468, 501, 510, 708, 769, 880, 1218
TfiI	GAWTC	5 cut(s)	178, 310, 563, 781, 791
Tru1I	TTAA	3 cut(s)	125, 222, 575
Tru9I	TTAA	3 cut(s)	125, 222, 575
TscAI	CASTG	1 cut(s)	1005
TseFI	GTSAC	4 cut(s)	401, 505, 819, 1034
TseI	GCWGC	5 cut(s)	129, 143, 923, 989, 1226
Tsp45I	GTSAC	4 cut(s)	401, 505, 819, 1034
TspDTI	ATGAA	5 cut(s)	31, 323, 762, 818, 1080
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	1 cut(s)	1005
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	1154
XagI	CCTNNNNNAGG	1 cut(s)	1149
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	2 cut(s)	141, 1029
XcmI	CCANNNNNNNNNTGG	1 cut(s)	974
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	2 cut(s)	824, 1158
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.