Rroxscaffold_2G00137740

Serine/Threonine protein kinases, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
75769188 .. 75776528
7341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137740.1

Sequence Viewer

Length: 1335 bp
ATGTTGAATAAAACCTATCCTCACATTGTTAAGCATCGCAAACTAATGTATGCAGCAGCTAGGGATGCTAAAGCGACACAGAGGTCCGCACCTACCGGGACTACAACGCAGTTTCCTTCGGACTCGTGTCATCTTAAACCCGGCCATCCAATCGACACTATTGGAGAGACGTGTTCCAAAGACACAGATTGCGACGCCGGTTTAAGCTGCCAAACATGCGCTGCAAATGGTAATACCCGACCCAGATGTACCCGGATTCAACCCACCAATCCTACATCTAAGGCCTTCCCCTTCAATAATTACACATGGCTTACGACCCACAACTCGTACGCTCAAGCAGGGGTGAGGTCGTCCACCGGATCGTTGATTATTGCTCCGATGAATCAGAACGACACCGTTACATCTCAGCTCAAAGGCAGACTGGATTCTGAAGCAAAAGCTGCTAAGAAAGGGAATATACAAAATGTGTTTCTAAACAATGAGAAGTTTAAGAATGGAGTTCGAGGATTTATGTTGGATATGTATGACTTCAACGACGACATCTGGTTATGTCACTCAACTGGGGGCAAATGTTACAATTTCACAGCATTTAGACCTGCACTTGACGTGCTGAAAGAAATTCGAGCATTTTTGGAAGCAAATCCCTCAGAGATTGTCACTATTTTTATTGAGGATTATGTAACATCTCCATCAGGCTTGTCAAAAGTCTTTGATTCAGCTGGTTTAAAGACCTATATGTTCCCCCTGGCTCGGATGCCAAAGGATGGAAACGATTGGCCAACTGTTGATGATATGGCTAAGAACAATCAGAGGTTGGTGGTCTTCACCTCTAAGTCATCGAAGGAGGCCTCAGAGGGAATTGCTTACGAGTGGAACTATGTCGTAGAAAATCAATATGGAAATGGTGGGATGGTACCTAATTCATGTCCGAATCGTGCTGAATCATCTCCCATGAACACAACATCAAAATCACTAGTTCTGGTGAACTACTTCCGTGATATTCCCAATGCATCAGCAACTTGCGCAGACAATTCAGCTTCATTACTGAGCGAGATAAAAACTTGTTATGATGCAGCTGGGAAACGGTGGCCAAACTTTATTGCTGTTGATTATTACCAGAAAAGTGATGGTGGGGGAGCTGCTGAAGCAGTGGATCAATCAAATGGTCAACTGACATGTGGGTGTGACAGCATTACATATTGCAAGGTGAATGCTACAACTGGAAATGCTACATTTGGTTCATGTGATGTCCCAAAACTTGCTCCACCGCCGCCTGCTTCCCTCGGCAGCACACCTCCTTCAGGTCCTAGTACGAACTTTGCTCCTCGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

48.21

Weight (kDa)

7.82

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 88 - 138 1.2e-15 PI-PLC-like catalytic domain
PI-PLC_X PF26146 160 - 378 9.2e-23 PI-PLC X
PI-PLC_cat PF26178 161 - 402 3.2e-134 PI-PLC-like catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 82
Acc16I TGCGCA 1 cut(s) 1024
Acc36I ACCTGC 1 cut(s) 604
Acc65I GGTACC 1 cut(s) 913
AccB1I GGYRCC 1 cut(s) 913
AccB7I CCANNNNNTGG 1 cut(s) 764
AciI CCGC 3 cut(s) 87, 1268, 1271
AclWI GGATC 2 cut(s) 367, 1161
AcoI YGGCCR 3 cut(s) 142, 776, 1088
AcsI RAATTY 1 cut(s) 618
AcuI CTGAAG 3 cut(s) 450, 1164, 1284
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 4 cut(s) 250, 329, 915, 1312
AfiI CCNNNNNNNGG 3 cut(s) 750, 764, 1301
AflIII ACRYGT 2 cut(s) 170, 1175
AgsI TTSAA 4 cut(s) 7, 260, 295, 532
AhlI ACTAGT 1 cut(s) 973
AjiI CACGTC 2 cut(s) 171, 607
AjnI CCWGG 1 cut(s) 744
AluBI AGCT 8 cut(s) 59, 207, 409, 440, 719, 1037, 1076, 1139
AluI AGCT 8 cut(s) 59, 207, 409, 440, 719, 1037, 1076, 1139
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 367, 1161
Ama87I CYCGRG 1 cut(s) 1326
AoxI GGCC 5 cut(s) 142, 282, 776, 846, 1088
ApeKI GCWGC 8 cut(s) 53, 56, 207, 221, 440, 1073, 1139, 1287
ApoI RAATTY 1 cut(s) 618
Asp700I GAANNNNTTC 1 cut(s) 989
Asp718I GGTACC 1 cut(s) 913
AspLEI GCGC 2 cut(s) 221, 1025
AspS9I GGNCC 2 cut(s) 84, 1304
AsuC2I CCSGG 3 cut(s) 97, 141, 253
AsuHPI GGTGA 4 cut(s) 355, 817, 994, 1219
AvaI CYCGRG 1 cut(s) 1326
AvaII GGWCC 2 cut(s) 84, 1304
BalI TGGCCA 2 cut(s) 778, 1090
BanI GGYRCC 1 cut(s) 913
BauI CACGAG 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 814
BbvI GCAGC 8 cut(s) 65, 68, 194, 208, 427, 1085, 1126, 1299
BccI CCATC 5 cut(s) 153, 697, 758, 904, 1121
BciT130I CCWGG 1 cut(s) 746
BcnI CCSGG 3 cut(s) 97, 141, 253
BcoDI GTCTC 1 cut(s) 161
BcuI ACTAGT 1 cut(s) 973
BfaI CTAG 3 cut(s) 60, 974, 1308
BfuAI ACCTGC 1 cut(s) 604
BisI GCNGC 9 cut(s) 54, 57, 208, 222, 441, 1074, 1140, 1271, 1288
BlsI GCNGC 9 cut(s) 55, 58, 209, 223, 442, 1075, 1141, 1272, 1289
Bme1390I CCNGG 4 cut(s) 97, 141, 253, 746
Bme18I GGWCC 2 cut(s) 84, 1304
BmeT110I CYCGRG 1 cut(s) 1326
BmgBI CACGTC 2 cut(s) 171, 607
BmgT120I GGNCC 2 cut(s) 84, 1304
BmiI GGNNCC 1 cut(s) 915
BmrFI CCNGG 4 cut(s) 97, 141, 253, 746
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 5 cut(s) 43, 55, 744, 1019, 1060
BmuI ACTGGG 1 cut(s) 570
BoxI GACNNNNGTC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 814
BpuEI CTTGAG 1 cut(s) 318
BpuMI CCSGG 3 cut(s) 97, 141, 253
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 744, 1282, 1325
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 3 cut(s) 750, 764, 1301
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 3 cut(s) 426, 565, 1225
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 3 cut(s) 744, 1282, 1325
BseGI GGATG 5 cut(s) 70, 145, 759, 769, 915
BseLI CCNNNNNNNGG 3 cut(s) 750, 764, 1301
BseMII CTCAG 4 cut(s) 419, 660, 864, 1037
BseNI ACTGG 3 cut(s) 426, 565, 1225
BseRI GAGGAG 1 cut(s) 1314
BseXI GCAGC 8 cut(s) 65, 68, 194, 208, 427, 1085, 1126, 1299
BseYI CCCAGC 1 cut(s) 1076
BsgI GTGCAG 1 cut(s) 582
BshFI GGCC 5 cut(s) 144, 284, 778, 848, 1090
BshNI GGYRCC 1 cut(s) 913
BsiHKCI CYCGRG 1 cut(s) 1326
BsiSI CCGG 5 cut(s) 96, 141, 198, 253, 357
BsiWI CGTACG 1 cut(s) 327
BslFI GGGAC 2 cut(s) 112, 1235
BslI CCNNNNNNNGG 3 cut(s) 750, 764, 1301
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 2 cut(s) 112, 1235
BsmI GAATGC 1 cut(s) 1216
BsnI GGCC 5 cut(s) 144, 284, 778, 848, 1090
BsoBI CYCGRG 1 cut(s) 1326
Bsp143I GATC 2 cut(s) 359, 1153
BspACI CCGC 3 cut(s) 87, 1268, 1271
BspANI GGCC 5 cut(s) 144, 284, 778, 848, 1090
BspCNI CTCAG 4 cut(s) 418, 659, 863, 1038
BspLI GGNNCC 1 cut(s) 915
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 2 cut(s) 367, 1161
BspT107I GGYRCC 1 cut(s) 913
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 3 cut(s) 426, 565, 1225
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 744, 1282, 1325
BssMI GATC 2 cut(s) 359, 1153
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 124
Bst2BI CACGAG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 3 cut(s) 397, 784, 1086
BstACI GRCGYC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 1275
BstDEI CTNAG 8 cut(s) 279, 405, 444, 646, 798, 831, 850, 1046
BstENI CCTNNNNNAGG 1 cut(s) 1299
BstF5I GGATG 5 cut(s) 70, 145, 759, 769, 915
BstHHI GCGC 2 cut(s) 221, 1025
BstKTI GATC 2 cut(s) 362, 1156
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 359, 1153
BstMWI GCNNNNNNNGC 5 cut(s) 65, 216, 440, 1022, 1145
BstNI CCWGG 1 cut(s) 746
BstNSI RCATGY 2 cut(s) 219, 1179
BstPAI GACNNNNGTC 1 cut(s) 126
BstSCI CCNGG 4 cut(s) 95, 139, 251, 744
BstV1I GCAGC 8 cut(s) 65, 68, 194, 208, 427, 1085, 1126, 1299
BstV2I GAAGAC 1 cut(s) 814
BsuRI GGCC 5 cut(s) 144, 284, 778, 848, 1090
BtgZI GCGATG 1 cut(s) 20
BtrI CACGTC 2 cut(s) 171, 607
BtsCI GGATG 5 cut(s) 70, 145, 759, 769, 915
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 1 cut(s) 1155
BveI ACCTGC 1 cut(s) 604
Cac8I GCNNGC 1 cut(s) 1275
CfoI GCGC 2 cut(s) 221, 1025
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 84, 1304
CseI GACGC 1 cut(s) 203
Csp6I GTAC 4 cut(s) 249, 328, 914, 1311
CviAII CATG 6 cut(s) 216, 306, 924, 952, 1176, 1242
CviQI GTAC 4 cut(s) 249, 328, 914, 1311
DdeI CTNAG 8 cut(s) 279, 405, 444, 646, 798, 831, 850, 1046
DpnI GATC 2 cut(s) 361, 1155
DpnII GATC 2 cut(s) 359, 1153
DraI TTTAAA 1 cut(s) 726
DrdI GACNNNNNNGTC 1 cut(s) 82
DseDI GACNNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 3 cut(s) 142, 776, 1088
Eco147I AGGCCT 2 cut(s) 284, 848
Eco47I GGWCC 2 cut(s) 84, 1304
Eco57I CTGAAG 3 cut(s) 450, 1164, 1284
Eco88I CYCGRG 1 cut(s) 1326
EcoNI CCTNNNNNAGG 1 cut(s) 1299
EcoO109I RGGNCCY 1 cut(s) 1304
EcoRII CCWGG 1 cut(s) 744
EcoT22I ATGCAT 1 cut(s) 1012
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 6 cut(s) 219, 309, 927, 955, 1179, 1245
FaqI GGGAC 2 cut(s) 112, 1235
FatI CATG 6 cut(s) 215, 305, 923, 951, 1175, 1241
Fnu4HI GCNGC 9 cut(s) 54, 57, 208, 222, 441, 1074, 1140, 1271, 1288
FokI GGATG 5 cut(s) 77, 132, 766, 776, 922
Fsp4HI GCNGC 9 cut(s) 54, 57, 208, 222, 441, 1074, 1140, 1271, 1288
FspBI CTAG 3 cut(s) 60, 974, 1308
FspI TGCGCA 1 cut(s) 1024
GlaI GCGC 2 cut(s) 220, 1024
GluI GCNGC 9 cut(s) 54, 57, 208, 222, 441, 1074, 1140, 1271, 1288
GsaI CCCAGC 1 cut(s) 1080
HaeIII GGCC 5 cut(s) 144, 284, 778, 848, 1090
HapII CCGG 5 cut(s) 96, 141, 198, 253, 357
HgaI GACGC 1 cut(s) 203
HhaI GCGC 2 cut(s) 221, 1025
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 6 cut(s) 219, 309, 927, 955, 1179, 1245
Hin6I GCGC 2 cut(s) 219, 1023
HinP1I GCGC 2 cut(s) 219, 1023
HincII GTYRAC 1 cut(s) 1169
HindII GTYRAC 1 cut(s) 1169
HinfI GANTC 7 cut(s) 122, 256, 382, 425, 713, 931, 941
HpaII CCGG 5 cut(s) 96, 141, 198, 253, 357
HphI GGTGA 4 cut(s) 355, 817, 994, 1219
Hpy166II GTNNAC 3 cut(s) 354, 985, 1169
Hpy188I TCNGA 9 cut(s) 121, 378, 387, 430, 649, 753, 810, 853, 930
Hpy188III TCNNGA 1 cut(s) 1328
Hpy8I GTNNAC 3 cut(s) 354, 985, 1169
Hpy99I CGWCG 2 cut(s) 197, 539
HpyAV CCTTC 5 cut(s) 126, 295, 301, 835, 1308
HpyCH4III ACNGT 3 cut(s) 397, 784, 1086
HpyCH4IV ACGT 2 cut(s) 170, 606
HpyCH4V TGCA 6 cut(s) 53, 224, 599, 1010, 1073, 1203
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 216, 440, 1022, 1145
HpyF3I CTNAG 8 cut(s) 279, 405, 444, 646, 798, 831, 850, 1046
HpySE526I ACGT 2 cut(s) 170, 606
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 6 cut(s) 219, 309, 927, 955, 1179, 1245
HspAI GCGC 2 cut(s) 219, 1023
KpnI GGTACC 1 cut(s) 917
Kzo9I GATC 2 cut(s) 359, 1153
LmnI GCTCC 4 cut(s) 379, 1136, 1267, 1327
Lsp1109I GCAGC 8 cut(s) 65, 68, 194, 208, 427, 1085, 1126, 1299
LweI GCATC 5 cut(s) 43, 55, 744, 1019, 1060
MaeI CTAG 3 cut(s) 60, 974, 1308
MaeII ACGT 2 cut(s) 170, 606
MaeIII GTNAC 6 cut(s) 397, 551, 572, 655, 679, 1184
MalI GATC 2 cut(s) 361, 1155
MboI GATC 2 cut(s) 359, 1153
MboII GAAGA 1 cut(s) 814
MlsI TGGCCA 2 cut(s) 778, 1090
MluCI AATT 6 cut(s) 298, 577, 618, 858, 919, 1030
MluNI TGGCCA 2 cut(s) 778, 1090
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 495
Mox20I TGGCCA 2 cut(s) 778, 1090
Mph1103I ATGCAT 1 cut(s) 1012
MroXI GAANNNNTTC 1 cut(s) 989
MscI TGGCCA 2 cut(s) 778, 1090
MseI TTAA 5 cut(s) 30, 135, 203, 489, 725
MslI CAYNNNNRTG 1 cut(s) 1180
Msp20I TGGCCA 2 cut(s) 778, 1090
MspA1I CMGCKG 2 cut(s) 719, 1076
MspI CCGG 5 cut(s) 96, 141, 198, 253, 357
MspR9I CCNGG 4 cut(s) 97, 141, 253, 746
Mva1269I GAATGC 1 cut(s) 1216
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 5 cut(s) 65, 216, 440, 1022, 1145
NciI CCSGG 3 cut(s) 97, 141, 253
NdeII GATC 2 cut(s) 359, 1153
NlaIII CATG 6 cut(s) 219, 309, 927, 955, 1179, 1245
NlaIV GGNNCC 1 cut(s) 915
NmeAIII GCCGAG 1 cut(s) 1263
NmuCI GTSAC 3 cut(s) 551, 655, 1184
NsbI TGCGCA 1 cut(s) 1024
NsiI ATGCAT 1 cut(s) 1012
NspI RCATGY 2 cut(s) 219, 1179
PceI AGGCCT 2 cut(s) 284, 848
PciI ACATGT 1 cut(s) 1175
PctI GAATGC 1 cut(s) 1216
PdmI GAANNNNTTC 1 cut(s) 989
PfeI GAWTC 6 cut(s) 256, 382, 425, 713, 931, 941
Pfl23II CGTACG 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 9 cut(s) 55, 58, 209, 223, 442, 1075, 1141, 1272, 1289
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 1304
PscI ACATGT 1 cut(s) 1175
PshAI GACNNNNGTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 1304
Psp6I CCWGG 1 cut(s) 744
PspFI CCCAGC 1 cut(s) 1076
PspGI CCWGG 1 cut(s) 744
PspLI CGTACG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 915
PspPI GGNCC 2 cut(s) 84, 1304
PspPPI RGGWCCY 1 cut(s) 1304
PvuII CAGCTG 2 cut(s) 719, 1076
RsaI GTAC 4 cut(s) 250, 329, 915, 1312
RsaNI GTAC 4 cut(s) 249, 328, 914, 1311
RseI CAYNNNNRTG 1 cut(s) 1180
SaqAI TTAA 5 cut(s) 30, 135, 203, 489, 725
SatI GCNGC 9 cut(s) 54, 57, 208, 222, 441, 1074, 1140, 1271, 1288
Sau3AI GATC 2 cut(s) 359, 1153
Sau96I GGNCC 2 cut(s) 84, 1304
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 4 cut(s) 97, 141, 253, 746
SfaNI GCATC 5 cut(s) 43, 55, 744, 1019, 1060
SinI GGWCC 2 cut(s) 84, 1304
SmiMI CAYNNNNRTG 1 cut(s) 1180
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
SpeI ACTAGT 1 cut(s) 973
Sse9I AATT 6 cut(s) 298, 577, 618, 858, 919, 1030
SseBI AGGCCT 2 cut(s) 284, 848
SsiI CCGC 3 cut(s) 87, 1268, 1271
SspMI CTAG 3 cut(s) 60, 974, 1308
StuI AGGCCT 2 cut(s) 284, 848
StyD4I CCNGG 4 cut(s) 95, 139, 251, 744
TaaI ACNGT 3 cut(s) 397, 784, 1086
TaiI ACGT 2 cut(s) 173, 609
TaqI TCGA 4 cut(s) 153, 502, 622, 839
TasI AATT 6 cut(s) 298, 577, 618, 858, 919, 1030
TauI GCSGC 1 cut(s) 1273
TfiI GAWTC 6 cut(s) 256, 382, 425, 713, 931, 941
Tru1I TTAA 5 cut(s) 30, 135, 203, 489, 725
Tru9I TTAA 5 cut(s) 30, 135, 203, 489, 725
TscAI CASTG 1 cut(s) 1155
TseFI GTSAC 3 cut(s) 551, 655, 1184
TseI GCWGC 8 cut(s) 53, 56, 207, 221, 440, 1073, 1139, 1287
Tsp45I GTSAC 3 cut(s) 551, 655, 1184
TspDTI ATGAA 5 cut(s) 395, 912, 968, 1029, 1230
TspGWI ACGGA 1 cut(s) 983
TspRI CASTG 1 cut(s) 1155
Van91I CCANNNNNTGG 1 cut(s) 764
VpaK11BI GGWCC 2 cut(s) 84, 1304
XagI CCTNNNNNAGG 1 cut(s) 1299
XapI RAATTY 1 cut(s) 618
XceI RCATGY 2 cut(s) 219, 1179
XcmI CCANNNNNNNNNTGG 1 cut(s) 1124
XmnI GAANNNNTTC 1 cut(s) 989
XspI CTAG 3 cut(s) 60, 974, 1308
Zsp2I ATGCAT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.