Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005850

Physical Location & Seq

Genomic Coordinates Reverse (-)

75416026 .. 75419969

Gene Structure 3944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGGAACTTTCTCGAAAAGTCCCAAACTTCAAGTTCTGTTCGTCATAGCTTGCCTATTCTCTCCCTGTATCAGCCTCAAGATTGGAGAGACGTGTTCCAAAGACACAGATTGCGACGCCGGTTTAAGCTGCCAAACATGCGCTGCAAATGGTAATACCCGACCCAGATGTACCCGGATTCAACCCACCAATCCTACATCTAAGGTGAAAAGGCCTTCCTTCAATAATTACACATGGCTTACGACCCACAACTCGTACGCTCAAGCAGGGGTGAGGTCGTCCACCGGATCGTTGATTATTGCTCCGATGAATCAGAACGACACCGTTACATCTCAGCTCAAAGGCAGACTGGATTCTGAAGCAAAAGCTGCTAAGAAAGGGAATATACAAAATGTGTTTCTAAACAATGAGAAGTTTAAGAATGGAGTTCGAGGATTTATGTTGGATATGTATGACTTCAACGACGACATCTGGTTATGTCACTCAACTGGGGGCAAATGTTACAATTTCACAGCATTTAGACCTGCACTTGACGTGCTGAAAGAAATTCGAGCATTTTTGGAAGCAAATCCCTCAGAGATTGTCACTATTTTTATTGAGGATTATGTAACATCTCCATCAGGCTTGTCAAAAGTCTTTGATTCAGCTGGTTTAAAGACCTATATGTTCCCCCTGGCTCGGATGCCAAAGGATGGAAACGATTGGCCAACTGTTGATGATATGGCTAAGAACAATCAGAGGTTGGTGGTCTTCACCTCTAAGTCATCGAAGGAGGCCTCAGAGGGAATTGCTTACGAGTGGAACTATGTCGTAGAAAATCAATATGGAAATGGTGGGATGGTACCTAATTCATGTCCGAATCGTGCTGAATCATCTCCCATGAACACAACATCAAAATCACTAGTTCTGGTGAACTACTTCCGTGATATTCCCAATGCATCAGCAACTTGCGCAGACAATTCAGCTTCATTACTGAGCGAGATAAAAACTTGTTATGATGCAGCTGGGAAACGGTGGCCAAACTTTATTGCTGTTGATTATTACCAGAAAAGTGATGGTGGGGGAGCTGCTGAAGCAGTGGATCAATCAAATGGTCAACTGACATGTGGGTGTGACAGCATTACATATTGCAAGGTGAATGCTACAACTGGAAATGCTACATTTGGTTCATGTGATGTCCCAAAACTTGCTCCACCGCCGCCTGCTTCCCTCGGCAGCACACCTCCTTCAGGTCCTAGTACGAACTTTGCTCCTCGGAATAGCAAATCAATCCTGTTGGGGTGGTTGTGTGGAACAATTTTGGCTGCCACTCTCTCAATGCAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

442

Amino Acids

47.81

Weight (kDa)

8.22

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	61 - 114	1.3e-16	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	136 - 354	9.3e-23	PI-PLC X
PI-PLC_cat	PF26178	137 - 378	3.1e-134	PI-PLC-like catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36945
fragaria_vesca	FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200
malus_domestica	MD02G1173900.v1.1
prunus_persica	Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1
pyrus_communis	pycom02g14020 pycom15g24810
rosa_chinensis	RchiOBHm_Chr2g0105901
rosa_laevigata	RLG00000017468
rosa_multiflora	Rmu_sc0004367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00137590 Rroxscaffold_2G00137740
rosa_rugosa	Rorug02G0131700 Rorug02G0131800
rosa_samantha	Rh2AG182300 Rh2BG192300 Rh2CG186900 Rh2DG188800
rosa_wichuraiana	Rw2G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	952
Acc36I	ACCTGC	1 cut(s)	532
Acc65I	GGTACC	1 cut(s)	841
AccB1I	GGYRCC	1 cut(s)	841
AccB7I	CCANNNNNTGG	1 cut(s)	692
AciI	CCGC	2 cut(s)	1196, 1199
AclWI	GGATC	2 cut(s)	295, 1089
AcoI	YGGCCR	2 cut(s)	704, 1016
AcsI	RAATTY	1 cut(s)	546
AcuI	CTGAAG	3 cut(s)	378, 1092, 1212
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	4 cut(s)	172, 257, 843, 1240
AfiI	CCNNNNNNNGG	3 cut(s)	678, 692, 1229
AflIII	ACRYGT	2 cut(s)	92, 1103
AgsI	TTSAA	4 cut(s)	32, 182, 223, 460
AhlI	ACTAGT	1 cut(s)	901
AjiI	CACGTC	2 cut(s)	93, 535
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	8 cut(s)	50, 129, 337, 368, 647, 965, 1004, 1067
AluI	AGCT	8 cut(s)	50, 129, 337, 368, 647, 965, 1004, 1067
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	295, 1089
AoxI	GGCC	4 cut(s)	212, 704, 774, 1016
ApeKI	GCWGC	7 cut(s)	129, 143, 368, 1001, 1067, 1215, 1304
ApoI	RAATTY	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	917
Asp718I	GGTACC	1 cut(s)	841
AspLEI	GCGC	2 cut(s)	143, 953
AspS9I	GGNCC	1 cut(s)	1232
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	5 cut(s)	217, 283, 745, 922, 1147
AvaII	GGWCC	1 cut(s)	1232
BalI	TGGCCA	2 cut(s)	706, 1018
BanI	GGYRCC	1 cut(s)	841
BbsI	GAAGAC	1 cut(s)	742
BbvI	GCAGC	7 cut(s)	116, 130, 355, 1013, 1054, 1227, 1291
BccI	CCATC	4 cut(s)	625, 686, 832, 1049
BciT130I	CCWGG	1 cut(s)	674
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	83
BcuI	ACTAGT	1 cut(s)	901
BfaI	CTAG	2 cut(s)	902, 1236
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	8 cut(s)	130, 144, 369, 1002, 1068, 1199, 1216, 1305
BlsI	GCNGC	8 cut(s)	131, 145, 370, 1003, 1069, 1200, 1217, 1306
Bme1390I	CCNGG	2 cut(s)	175, 674
Bme18I	GGWCC	1 cut(s)	1232
BmgBI	CACGTC	2 cut(s)	93, 535
BmgT120I	GGNCC	1 cut(s)	1232
BmiI	GGNNCC	1 cut(s)	843
BmrFI	CCNGG	2 cut(s)	175, 674
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	672, 947, 988
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	742
BpuEI	CTTGAG	2 cut(s)	62, 246
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	672, 1210, 1253
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	3 cut(s)	678, 692, 1229
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	3 cut(s)	354, 493, 1153
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	3 cut(s)	672, 1210, 1253
BseGI	GGATG	3 cut(s)	687, 697, 843
BseLI	CCNNNNNNNGG	3 cut(s)	678, 692, 1229
BseMII	CTCAG	4 cut(s)	347, 588, 792, 965
BseNI	ACTGG	3 cut(s)	354, 493, 1153
BseRI	GAGGAG	1 cut(s)	1242
BseXI	GCAGC	7 cut(s)	116, 130, 355, 1013, 1054, 1227, 1291
BseYI	CCCAGC	1 cut(s)	1004
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	4 cut(s)	214, 706, 776, 1018
BshNI	GGYRCC	1 cut(s)	841
BsiSI	CCGG	3 cut(s)	120, 175, 285
BsiWI	CGTACG	1 cut(s)	255
BslFI	GGGAC	2 cut(s)	6, 1163
BslI	CCNNNNNNNGG	3 cut(s)	678, 692, 1229
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	6, 1163
BsmI	GAATGC	1 cut(s)	1144
BsnI	GGCC	4 cut(s)	214, 706, 776, 1018
Bsp143I	GATC	2 cut(s)	287, 1081
BspACI	CCGC	2 cut(s)	1196, 1199
BspANI	GGCC	4 cut(s)	214, 706, 776, 1018
BspCNI	CTCAG	4 cut(s)	346, 587, 791, 966
BspLI	GGNNCC	1 cut(s)	843
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	295, 1089
BspT107I	GGYRCC	1 cut(s)	841
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	3 cut(s)	354, 493, 1153
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	672, 1210, 1253
BssMI	GATC	2 cut(s)	287, 1081
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	3 cut(s)	325, 712, 1014
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	52, 1203
BstDEI	CTNAG	8 cut(s)	201, 333, 372, 574, 726, 759, 778, 974
BstENI	CCTNNNNNAGG	1 cut(s)	1227
BstF5I	GGATG	3 cut(s)	687, 697, 843
BstHHI	GCGC	2 cut(s)	143, 953
BstKTI	GATC	2 cut(s)	290, 1084
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	287, 1081
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 368, 950, 1073
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	2 cut(s)	141, 1107
BstSCI	CCNGG	2 cut(s)	173, 672
BstV1I	GCAGC	7 cut(s)	116, 130, 355, 1013, 1054, 1227, 1291
BstV2I	GAAGAC	1 cut(s)	742
BsuRI	GGCC	4 cut(s)	214, 706, 776, 1018
BtrI	CACGTC	2 cut(s)	93, 535
BtsCI	GGATG	3 cut(s)	687, 697, 843
BtsI	GCAGTG	1 cut(s)	1083
BtsIMutI	CAGTG	1 cut(s)	1083
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	2 cut(s)	52, 1203
CfoI	GCGC	2 cut(s)	143, 953
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	1232
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	4 cut(s)	171, 256, 842, 1239
CviAII	CATG	6 cut(s)	138, 234, 852, 880, 1104, 1170
CviQI	GTAC	4 cut(s)	171, 256, 842, 1239
DdeI	CTNAG	8 cut(s)	201, 333, 372, 574, 726, 759, 778, 974
DpnI	GATC	2 cut(s)	289, 1083
DpnII	GATC	2 cut(s)	287, 1081
DraI	TTTAAA	1 cut(s)	654
EaeI	YGGCCR	2 cut(s)	704, 1016
Eco147I	AGGCCT	2 cut(s)	214, 776
Eco47I	GGWCC	1 cut(s)	1232
Eco57I	CTGAAG	3 cut(s)	378, 1092, 1212
EcoNI	CCTNNNNNAGG	1 cut(s)	1227
EcoO109I	RGGNCCY	1 cut(s)	1232
EcoRII	CCWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	940
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	6 cut(s)	141, 237, 855, 883, 1107, 1173
FaqI	GGGAC	2 cut(s)	6, 1163
FatI	CATG	6 cut(s)	137, 233, 851, 879, 1103, 1169
Fnu4HI	GCNGC	8 cut(s)	130, 144, 369, 1002, 1068, 1199, 1216, 1305
FokI	GGATG	3 cut(s)	694, 704, 850
Fsp4HI	GCNGC	8 cut(s)	130, 144, 369, 1002, 1068, 1199, 1216, 1305
FspBI	CTAG	2 cut(s)	902, 1236
FspI	TGCGCA	1 cut(s)	952
GlaI	GCGC	2 cut(s)	142, 952
GluI	GCNGC	8 cut(s)	130, 144, 369, 1002, 1068, 1199, 1216, 1305
GsaI	CCCAGC	1 cut(s)	1008
HaeIII	GGCC	4 cut(s)	214, 706, 776, 1018
HapII	CCGG	3 cut(s)	120, 175, 285
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	143, 953
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	6 cut(s)	141, 237, 855, 883, 1107, 1173
Hin6I	GCGC	2 cut(s)	141, 951
HinP1I	GCGC	2 cut(s)	141, 951
HincII	GTYRAC	1 cut(s)	1097
HindII	GTYRAC	1 cut(s)	1097
HinfI	GANTC	6 cut(s)	178, 310, 353, 641, 859, 869
HpaII	CCGG	3 cut(s)	120, 175, 285
HphI	GGTGA	5 cut(s)	217, 283, 745, 922, 1147
Hpy166II	GTNNAC	3 cut(s)	282, 913, 1097
Hpy188I	TCNGA	9 cut(s)	306, 315, 358, 577, 681, 738, 781, 858, 1257
Hpy188III	TCNNGA	2 cut(s)	13, 79
Hpy8I	GTNNAC	3 cut(s)	282, 913, 1097
Hpy99I	CGWCG	2 cut(s)	119, 467
HpyAV	CCTTC	4 cut(s)	225, 229, 763, 1236
HpyCH4III	ACNGT	3 cut(s)	325, 712, 1014
HpyCH4IV	ACGT	2 cut(s)	92, 534
HpyCH4V	TGCA	6 cut(s)	146, 527, 938, 1001, 1131, 1321
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 368, 950, 1073
HpyF3I	CTNAG	8 cut(s)	201, 333, 372, 574, 726, 759, 778, 974
HpySE526I	ACGT	2 cut(s)	92, 534
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	6 cut(s)	141, 237, 855, 883, 1107, 1173
HspAI	GCGC	2 cut(s)	141, 951
KpnI	GGTACC	1 cut(s)	845
Kzo9I	GATC	2 cut(s)	287, 1081
LmnI	GCTCC	4 cut(s)	307, 1064, 1195, 1255
Lsp1109I	GCAGC	7 cut(s)	116, 130, 355, 1013, 1054, 1227, 1291
LweI	GCATC	3 cut(s)	672, 947, 988
MaeI	CTAG	2 cut(s)	902, 1236
MaeII	ACGT	2 cut(s)	92, 534
MaeIII	GTNAC	6 cut(s)	325, 479, 500, 583, 607, 1112
MalI	GATC	2 cut(s)	289, 1083
MboI	GATC	2 cut(s)	287, 1081
MboII	GAAGA	1 cut(s)	742
MlsI	TGGCCA	2 cut(s)	706, 1018
MluCI	AATT	7 cut(s)	226, 505, 546, 786, 847, 958, 1296
MluNI	TGGCCA	2 cut(s)	706, 1018
MmeI	TCCRAC	1 cut(s)	423
Mox20I	TGGCCA	2 cut(s)	706, 1018
Mph1103I	ATGCAT	1 cut(s)	940
MroXI	GAANNNNTTC	1 cut(s)	917
MscI	TGGCCA	2 cut(s)	706, 1018
MseI	TTAA	3 cut(s)	125, 417, 653
MslI	CAYNNNNRTG	1 cut(s)	1108
Msp20I	TGGCCA	2 cut(s)	706, 1018
MspA1I	CMGCKG	2 cut(s)	647, 1004
MspI	CCGG	3 cut(s)	120, 175, 285
MspR9I	CCNGG	2 cut(s)	175, 674
Mva1269I	GAATGC	1 cut(s)	1144
MvaI	CCWGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	4 cut(s)	138, 368, 950, 1073
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	2 cut(s)	287, 1081
NlaIII	CATG	6 cut(s)	141, 237, 855, 883, 1107, 1173
NlaIV	GGNNCC	1 cut(s)	843
NmeAIII	GCCGAG	1 cut(s)	1191
NmuCI	GTSAC	3 cut(s)	479, 583, 1112
NsbI	TGCGCA	1 cut(s)	952
NsiI	ATGCAT	1 cut(s)	940
NspI	RCATGY	2 cut(s)	141, 1107
PceI	AGGCCT	2 cut(s)	214, 776
PciI	ACATGT	1 cut(s)	1103
PctI	GAATGC	1 cut(s)	1144
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	6 cut(s)	178, 310, 353, 641, 859, 869
Pfl23II	CGTACG	1 cut(s)	255
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	8 cut(s)	131, 145, 370, 1003, 1069, 1200, 1217, 1306
PpuMI	RGGWCCY	1 cut(s)	1232
PscI	ACATGT	1 cut(s)	1103
Psp5II	RGGWCCY	1 cut(s)	1232
Psp6I	CCWGG	1 cut(s)	672
PspFI	CCCAGC	1 cut(s)	1004
PspGI	CCWGG	1 cut(s)	672
PspLI	CGTACG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	1232
PspPPI	RGGWCCY	1 cut(s)	1232
PvuII	CAGCTG	2 cut(s)	647, 1004
RsaI	GTAC	4 cut(s)	172, 257, 843, 1240
RsaNI	GTAC	4 cut(s)	171, 256, 842, 1239
RseI	CAYNNNNRTG	1 cut(s)	1108
SaqAI	TTAA	3 cut(s)	125, 417, 653
SatI	GCNGC	8 cut(s)	130, 144, 369, 1002, 1068, 1199, 1216, 1305
Sau3AI	GATC	2 cut(s)	287, 1081
Sau96I	GGNCC	1 cut(s)	1232
ScrFI	CCNGG	2 cut(s)	175, 674
SfaNI	GCATC	3 cut(s)	672, 947, 988
SinI	GGWCC	1 cut(s)	1232
SmiMI	CAYNNNNRTG	1 cut(s)	1108
SmlI	CTYRAG	2 cut(s)	77, 261
SmoI	CTYRAG	2 cut(s)	77, 261
SpeI	ACTAGT	1 cut(s)	901
Sse9I	AATT	7 cut(s)	226, 505, 546, 786, 847, 958, 1296
SseBI	AGGCCT	2 cut(s)	214, 776
SsiI	CCGC	2 cut(s)	1196, 1199
SspMI	CTAG	2 cut(s)	902, 1236
StuI	AGGCCT	2 cut(s)	214, 776
StyD4I	CCNGG	2 cut(s)	173, 672
TaaI	ACNGT	3 cut(s)	325, 712, 1014
TaiI	ACGT	2 cut(s)	95, 537
TaqI	TCGA	4 cut(s)	14, 430, 550, 767
TasI	AATT	7 cut(s)	226, 505, 546, 786, 847, 958, 1296
TauI	GCSGC	1 cut(s)	1201
TfiI	GAWTC	6 cut(s)	178, 310, 353, 641, 859, 869
Tru1I	TTAA	3 cut(s)	125, 417, 653
Tru9I	TTAA	3 cut(s)	125, 417, 653
TscAI	CASTG	1 cut(s)	1083
TseFI	GTSAC	3 cut(s)	479, 583, 1112
TseI	GCWGC	7 cut(s)	129, 143, 368, 1001, 1067, 1215, 1304
Tsp45I	GTSAC	3 cut(s)	479, 583, 1112
TspDTI	ATGAA	5 cut(s)	323, 840, 896, 957, 1158
TspGWI	ACGGA	1 cut(s)	911
TspRI	CASTG	1 cut(s)	1083
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	1232
XagI	CCTNNNNNAGG	1 cut(s)	1227
XapI	RAATTY	1 cut(s)	546
XceI	RCATGY	2 cut(s)	141, 1107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1052
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	2 cut(s)	902, 1236
Zsp2I	ATGCAT	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.