Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005850

Physical Location & Seq

Genomic Coordinates Forward (+)

15977341 .. 15981336

Gene Structure 3996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G014300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGGAACTTTCTCAAAAAGTCCCAAACTTCAAGTTCTGTTCATCGTAGCTTGCCTATTCTCTCCCTGTATCAGCCTCAAGATTGGAGAGACGTGTTCCAAAGACACAGATTGCGACGCCGGTTTAAGCTGCCAAACATGCGCTGCAAATGGTAATACCCGACCCAGATGTACCCGGATTCAACCCACCAATCCTACATCTAAGGTGAAAGGTCTTCTTCCCTTTAATAATTACACATGGCTTACGACCCACAACTCGTACGCTCAAGCAGGGGTGAGGTCGTCCACCGGATCGTTGATTATTGCTCCGATGAATCAGAACGACACCGTCACATCTCAGCTCAAAAATGGAGTTCGAGGATTTATGTTGGATATGTATGACTTCAACAACGATATCTGGTTATGTCACTCAACTGGGGGCAAATGTTACAATTTCACAGCATTTAGACCTGCTCTTGACGTGCTGAAAGAAATTCGAGCATTTTTGGAAGCAAATCCCTCAGAGATTGTCACAATTTTTATTGAGGATTATGTAACATCTCCATCAGGCTTGTCAAAAGTCTTTGATTCAGCTGGTTTAAAGACCTATATGTTCCCCCTGGCTCGGATGCCAAAGGATGGAAATGATTGGCCAACTGTTGATGATATGGCTAAGAACAATCAGAGGTTGGTGGTCTTCACCTCTAAGTCATCAAAGGAGGCCTCAGAGGGAATTGCTTACGAGTGGAACTATGTCGTAGAAAATCAATATGGAAATGGTGGGATGGTACCTAATTCATGTCCGAATCGTGCTGAATCATCTCCCATGAACACAACATCAAAGTCACTAGTTCTGGTGAACTACTTCCGTGATATTCCCAATGCATCAGCAACTTGCGCAGACAATTCGGCTCCATTACTGAGCGAGATAAAAACTTGTTATGATGCAGCTGGGAAACGGTGGCCAAACTTTATTGCCGTTGATTATTACCAGAAAAGTGATGGCGGGGGAGCTGCTGAAGCAGTGGATCAATCAAATGGTCAACTGACATGTGGGTGTGACAGCATTACATATTGCAAGGTGAATGCTACAACTGGAAATGCTACATTTGGTTCATGTGATGTCCCAAAACTTGCTCCACCGCCGCCTGCTTCCCTCGCCAGCACACCTCCTTCAGGTCCTAGTAGTAACTTTGCTCCTCGGAATAGCAAATCAATCCTGTTGAGGTGGTTGTGTGGAACAATTTTGGCTGCCACTCTCTCAATGCGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

417

Amino Acids

45.09

Weight (kDa)

8.05

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	61 - 353	2.6e-160	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	101 - 329	1.3e-25	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36945
fragaria_vesca	FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200
malus_domestica	MD02G1173900.v1.1
prunus_persica	Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1
pyrus_communis	pycom02g14020 pycom15g24810
rosa_chinensis	RchiOBHm_Chr2g0105901
rosa_laevigata	RLG00000017468
rosa_multiflora	Rmu_sc0004367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00137590 Rroxscaffold_2G00137740
rosa_rugosa	Rorug02G0131700 Rorug02G0131800
rosa_samantha	Rh2AG182300 Rh2BG192300 Rh2CG186900 Rh2DG188800
rosa_wichuraiana	Rw2G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	877
Acc36I	ACCTGC	1 cut(s)	457
Acc65I	GGTACC	1 cut(s)	766
AccB1I	GGYRCC	1 cut(s)	766
AccB7I	CCANNNNNTGG	1 cut(s)	617
AciI	CCGC	4 cut(s)	984, 1121, 1124, 1246
AclWI	GGATC	2 cut(s)	298, 1014
AcoI	YGGCCR	2 cut(s)	629, 941
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	2 cut(s)	1017, 1137
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	3 cut(s)	172, 260, 768
AfiI	CCNNNNNNNGG	3 cut(s)	603, 617, 1154
AflIII	ACRYGT	2 cut(s)	92, 1028
AgsI	TTSAA	3 cut(s)	32, 182, 385
AhlI	ACTAGT	1 cut(s)	826
AjiI	CACGTC	2 cut(s)	93, 460
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	6 cut(s)	50, 129, 340, 572, 929, 992
AluI	AGCT	6 cut(s)	50, 129, 340, 572, 929, 992
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	298, 1014
AoxI	GGCC	3 cut(s)	629, 699, 941
ApeKI	GCWGC	5 cut(s)	129, 143, 926, 992, 1229
ApoI	RAATTY	1 cut(s)	471
Asp700I	GAANNNNTTC	1 cut(s)	842
Asp718I	GGTACC	1 cut(s)	766
AspLEI	GCGC	2 cut(s)	143, 878
AspS9I	GGNCC	1 cut(s)	1157
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	5 cut(s)	217, 286, 670, 847, 1072
AvaII	GGWCC	1 cut(s)	1157
BalI	TGGCCA	2 cut(s)	631, 943
BanI	GGYRCC	1 cut(s)	766
BbsI	GAAGAC	2 cut(s)	206, 667
BbvI	GCAGC	5 cut(s)	116, 130, 938, 979, 1216
BccI	CCATC	4 cut(s)	550, 611, 757, 974
BceAI	ACGGC	1 cut(s)	941
BcgI	CGANNNNNNTGC	2 cut(s)	867, 901
BciT130I	CCWGG	1 cut(s)	599
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	83
BcuI	ACTAGT	1 cut(s)	826
BfaI	CTAG	2 cut(s)	827, 1161
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	6 cut(s)	130, 144, 927, 993, 1124, 1230
BlsI	GCNGC	6 cut(s)	131, 145, 928, 994, 1125, 1231
Bme1390I	CCNGG	2 cut(s)	175, 599
Bme18I	GGWCC	1 cut(s)	1157
BmgBI	CACGTC	2 cut(s)	93, 460
BmgT120I	GGNCC	1 cut(s)	1157
BmiI	GGNNCC	2 cut(s)	768, 891
BmrFI	CCNGG	2 cut(s)	175, 599
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	3 cut(s)	597, 872, 913
BmuI	ACTGGG	1 cut(s)	423
BpiI	GAAGAC	2 cut(s)	206, 667
BpuEI	CTTGAG	2 cut(s)	62, 249
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	597, 1178
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	3 cut(s)	603, 617, 1154
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	418, 1078
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	597, 1178
BseGI	GGATG	3 cut(s)	612, 622, 768
BseLI	CCNNNNNNNGG	3 cut(s)	603, 617, 1154
BseMII	CTCAG	4 cut(s)	350, 513, 717, 890
BseNI	ACTGG	2 cut(s)	418, 1078
BseRI	GAGGAG	1 cut(s)	1167
BseXI	GCAGC	5 cut(s)	116, 130, 938, 979, 1216
BseYI	CCCAGC	1 cut(s)	929
BshFI	GGCC	3 cut(s)	631, 701, 943
BshNI	GGYRCC	1 cut(s)	766
BsiSI	CCGG	3 cut(s)	120, 175, 288
BsiWI	CGTACG	1 cut(s)	258
BslFI	GGGAC	2 cut(s)	6, 1088
BslI	CCNNNNNNNGG	3 cut(s)	603, 617, 1154
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	6, 1088
BsmI	GAATGC	1 cut(s)	1069
BsnI	GGCC	3 cut(s)	631, 701, 943
Bsp143I	GATC	2 cut(s)	290, 1006
BspACI	CCGC	4 cut(s)	984, 1121, 1124, 1246
BspANI	GGCC	3 cut(s)	631, 701, 943
BspCNI	CTCAG	4 cut(s)	349, 512, 716, 891
BspLI	GGNNCC	2 cut(s)	768, 891
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	2 cut(s)	298, 1014
BspT107I	GGYRCC	1 cut(s)	766
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	418, 1078
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	597, 1178
BssMI	GATC	2 cut(s)	290, 1006
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	3 cut(s)	328, 637, 939
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	52, 1128, 1141
BstDEI	CTNAG	7 cut(s)	201, 336, 499, 651, 684, 703, 899
BstENI	CCTNNNNNAGG	1 cut(s)	1152
BstF5I	GGATG	3 cut(s)	612, 622, 768
BstHHI	GCGC	2 cut(s)	143, 878
BstKTI	GATC	2 cut(s)	293, 1009
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	290, 1006
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 875, 998, 1136
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	2 cut(s)	141, 1032
BstSCI	CCNGG	2 cut(s)	173, 597
BstV1I	GCAGC	5 cut(s)	116, 130, 938, 979, 1216
BstV2I	GAAGAC	2 cut(s)	206, 667
BsuRI	GGCC	3 cut(s)	631, 701, 943
BtrI	CACGTC	2 cut(s)	93, 460
BtsCI	GGATG	3 cut(s)	612, 622, 768
BtsI	GCAGTG	1 cut(s)	1008
BtsIMutI	CAGTG	1 cut(s)	1008
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	3 cut(s)	52, 1128, 1141
CfoI	GCGC	2 cut(s)	143, 878
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	1157
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	171, 259, 767
CviAII	CATG	6 cut(s)	138, 237, 777, 805, 1029, 1095
CviQI	GTAC	3 cut(s)	171, 259, 767
DdeI	CTNAG	7 cut(s)	201, 336, 499, 651, 684, 703, 899
DpnI	GATC	2 cut(s)	292, 1008
DpnII	GATC	2 cut(s)	290, 1006
DraI	TTTAAA	1 cut(s)	579
EaeI	YGGCCR	2 cut(s)	629, 941
Eco147I	AGGCCT	1 cut(s)	701
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	1157
Eco57I	CTGAAG	2 cut(s)	1017, 1137
EcoNI	CCTNNNNNAGG	1 cut(s)	1152
EcoO109I	RGGNCCY	1 cut(s)	1157
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	865
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	6 cut(s)	141, 240, 780, 808, 1032, 1098
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	2 cut(s)	6, 1088
FatI	CATG	6 cut(s)	137, 236, 776, 804, 1028, 1094
FauI	CCCGC	1 cut(s)	977
Fnu4HI	GCNGC	6 cut(s)	130, 144, 927, 993, 1124, 1230
FokI	GGATG	3 cut(s)	619, 629, 775
Fsp4HI	GCNGC	6 cut(s)	130, 144, 927, 993, 1124, 1230
FspBI	CTAG	2 cut(s)	827, 1161
FspI	TGCGCA	1 cut(s)	877
GlaI	GCGC	2 cut(s)	142, 877
GluI	GCNGC	6 cut(s)	130, 144, 927, 993, 1124, 1230
GsaI	CCCAGC	1 cut(s)	933
HaeIII	GGCC	3 cut(s)	631, 701, 943
HapII	CCGG	3 cut(s)	120, 175, 288
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	143, 878
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	6 cut(s)	141, 240, 780, 808, 1032, 1098
Hin6I	GCGC	2 cut(s)	141, 876
HinP1I	GCGC	2 cut(s)	141, 876
HincII	GTYRAC	1 cut(s)	1022
HindII	GTYRAC	1 cut(s)	1022
HinfI	GANTC	5 cut(s)	178, 313, 566, 784, 794
HpaII	CCGG	3 cut(s)	120, 175, 288
HphI	GGTGA	5 cut(s)	217, 286, 670, 847, 1072
Hpy166II	GTNNAC	3 cut(s)	285, 838, 1022
Hpy188I	TCNGA	8 cut(s)	309, 318, 502, 606, 663, 706, 783, 1182
Hpy188III	TCNNGA	2 cut(s)	79, 455
Hpy8I	GTNNAC	3 cut(s)	285, 838, 1022
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	1161
HpyCH4III	ACNGT	3 cut(s)	328, 637, 939
HpyCH4IV	ACGT	2 cut(s)	92, 459
HpyCH4V	TGCA	4 cut(s)	146, 863, 926, 1056
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 875, 998, 1136
HpyF3I	CTNAG	7 cut(s)	201, 336, 499, 651, 684, 703, 899
HpySE526I	ACGT	2 cut(s)	92, 459
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	6 cut(s)	141, 240, 780, 808, 1032, 1098
HspAI	GCGC	2 cut(s)	141, 876
KpnI	GGTACC	1 cut(s)	770
Kzo9I	GATC	2 cut(s)	290, 1006
LmnI	GCTCC	5 cut(s)	310, 895, 989, 1120, 1180
Lsp1109I	GCAGC	5 cut(s)	116, 130, 938, 979, 1216
LweI	GCATC	3 cut(s)	597, 872, 913
MaeI	CTAG	2 cut(s)	827, 1161
MaeII	ACGT	2 cut(s)	92, 459
MaeIII	GTNAC	8 cut(s)	328, 404, 425, 508, 532, 822, 1037, 1166
MalI	GATC	2 cut(s)	292, 1008
MboI	GATC	2 cut(s)	290, 1006
MboII	GAAGA	3 cut(s)	206, 209, 667
MlsI	TGGCCA	2 cut(s)	631, 943
MluCI	AATT	8 cut(s)	229, 430, 471, 513, 711, 772, 883, 1221
MluNI	TGGCCA	2 cut(s)	631, 943
MmeI	TCCRAC	1 cut(s)	348
Mox20I	TGGCCA	2 cut(s)	631, 943
Mph1103I	ATGCAT	1 cut(s)	865
MroXI	GAANNNNTTC	1 cut(s)	842
MscI	TGGCCA	2 cut(s)	631, 943
MseI	TTAA	3 cut(s)	125, 225, 578
MslI	CAYNNNNRTG	1 cut(s)	1033
Msp20I	TGGCCA	2 cut(s)	631, 943
MspA1I	CMGCKG	2 cut(s)	572, 929
MspI	CCGG	3 cut(s)	120, 175, 288
MspR9I	CCNGG	2 cut(s)	175, 599
Mva1269I	GAATGC	1 cut(s)	1069
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	4 cut(s)	138, 875, 998, 1136
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	2 cut(s)	290, 1006
NlaIII	CATG	6 cut(s)	141, 240, 780, 808, 1032, 1098
NlaIV	GGNNCC	2 cut(s)	768, 891
NmuCI	GTSAC	5 cut(s)	328, 404, 508, 822, 1037
NsbI	TGCGCA	1 cut(s)	877
NsiI	ATGCAT	1 cut(s)	865
NspI	RCATGY	2 cut(s)	141, 1032
PceI	AGGCCT	1 cut(s)	701
PciI	ACATGT	1 cut(s)	1028
PctI	GAATGC	1 cut(s)	1069
PdmI	GAANNNNTTC	1 cut(s)	842
PfeI	GAWTC	5 cut(s)	178, 313, 566, 784, 794
Pfl23II	CGTACG	1 cut(s)	258
PflFI	GACNNNGTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	6 cut(s)	131, 145, 928, 994, 1125, 1231
PpuMI	RGGWCCY	1 cut(s)	1157
PscI	ACATGT	1 cut(s)	1028
Psp5II	RGGWCCY	1 cut(s)	1157
Psp6I	CCWGG	1 cut(s)	597
PspFI	CCCAGC	1 cut(s)	929
PspGI	CCWGG	1 cut(s)	597
PspLI	CGTACG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	768, 891
PspPI	GGNCC	1 cut(s)	1157
PspPPI	RGGWCCY	1 cut(s)	1157
PsyI	GACNNNGTC	1 cut(s)	326
PvuII	CAGCTG	2 cut(s)	572, 929
RsaI	GTAC	3 cut(s)	172, 260, 768
RsaNI	GTAC	3 cut(s)	171, 259, 767
RseI	CAYNNNNRTG	1 cut(s)	1033
SaqAI	TTAA	3 cut(s)	125, 225, 578
SatI	GCNGC	6 cut(s)	130, 144, 927, 993, 1124, 1230
Sau3AI	GATC	2 cut(s)	290, 1006
Sau96I	GGNCC	1 cut(s)	1157
ScrFI	CCNGG	2 cut(s)	175, 599
SfaNI	GCATC	3 cut(s)	597, 872, 913
SinI	GGWCC	1 cut(s)	1157
SmiMI	CAYNNNNRTG	1 cut(s)	1033
SmlI	CTYRAG	2 cut(s)	77, 264
SmoI	CTYRAG	2 cut(s)	77, 264
SpeI	ACTAGT	1 cut(s)	826
Sse9I	AATT	8 cut(s)	229, 430, 471, 513, 711, 772, 883, 1221
SseBI	AGGCCT	1 cut(s)	701
SsiI	CCGC	4 cut(s)	984, 1121, 1124, 1246
SspMI	CTAG	2 cut(s)	827, 1161
StuI	AGGCCT	1 cut(s)	701
StyD4I	CCNGG	2 cut(s)	173, 597
TaaI	ACNGT	3 cut(s)	328, 637, 939
TaiI	ACGT	2 cut(s)	95, 462
TaqI	TCGA	2 cut(s)	355, 475
TasI	AATT	8 cut(s)	229, 430, 471, 513, 711, 772, 883, 1221
TauI	GCSGC	1 cut(s)	1126
TfiI	GAWTC	5 cut(s)	178, 313, 566, 784, 794
Tru1I	TTAA	3 cut(s)	125, 225, 578
Tru9I	TTAA	3 cut(s)	125, 225, 578
TscAI	CASTG	1 cut(s)	1008
TseFI	GTSAC	5 cut(s)	328, 404, 508, 822, 1037
TseI	GCWGC	5 cut(s)	129, 143, 926, 992, 1229
Tsp45I	GTSAC	5 cut(s)	328, 404, 508, 822, 1037
TspDTI	ATGAA	5 cut(s)	31, 326, 765, 821, 1083
TspGWI	ACGGA	1 cut(s)	836
TspRI	CASTG	1 cut(s)	1008
Tth111I	GACNNNGTC	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	1157
XagI	CCTNNNNNAGG	1 cut(s)	1152
XapI	RAATTY	1 cut(s)	471
XceI	RCATGY	2 cut(s)	141, 1032
XcmI	CCANNNNNNNNNTGG	1 cut(s)	977
XmnI	GAANNNNTTC	1 cut(s)	842
XspI	CTAG	2 cut(s)	827, 1161
Zsp2I	ATGCAT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.