Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005850

Physical Location & Seq

Genomic Coordinates Forward (+)

10624347 .. 10627170

Gene Structure 2824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAACCAGAACGACACCGTTGCCAACCAACTCAAAAATGGTGTCCGAGGGTTGATGCTGGATATGTATGACTTCAACAACGACGTCTGGTTATGTCACTCGTATGGTGGCAAATGTTACAACTTCACTGCATTTCAACCTGCAATTAACGTGCTGAGAGATATTAAAACCTTTTTGGAATCCAACCCCTCAGAGATTGTCACCATTTTTATCGAAGATTATGTGGAATCTCCATCGGGCCTGACAAAGGTCTTTGAGGCAGCTGACCTCAAAAAATTTTGGTTCCCAGTTGCTCAGATGCCAAAGAACGGGAGTGATTGGCCAACTGTTGATGATATGGTCCAGAATAATCAGCGGTTGGTGGTCTTCACCTCTAAGAAAGCTAAGGAGGCTTCAGAGGGAATTGCTTATGAGTGGAACTATGTTGTCGAAAATCAATATGGAAATAAAGGGATGGTACCTGGTTCATGTCCGAGTCGTGCTGAATCATCTCCAATGGACACAACGTCTAAATCACTAGTTCTTGTGAACTATTTTCGCGATCGATCTTCCAAATGCATCAGCATCTTGCATGGACAATTCAGCTCCCTTACTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.49

Weight (kDa)

5.27

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	1 - 185	4.6e-107	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	2 - 188	3.9e-22	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36945
fragaria_vesca	FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200
malus_domestica	MD02G1173900.v1.1
prunus_persica	Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1
pyrus_communis	pycom02g14020 pycom15g24810
rosa_chinensis	RchiOBHm_Chr2g0105901
rosa_laevigata	RLG00000017468
rosa_multiflora	Rmu_sc0004367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00137590 Rroxscaffold_2G00137740
rosa_rugosa	Rorug02G0131700 Rorug02G0131800
rosa_samantha	Rh2AG182300 Rh2BG192300 Rh2CG186900 Rh2DG188800
rosa_wichuraiana	Rw2G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	148
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	457
AccII	CGCG	1 cut(s)	540
AciI	CCGC	1 cut(s)	355
AcoI	YGGCCR	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	2 cut(s)	247, 308
AgsI	TTSAA	2 cut(s)	76, 137
AhdI	GACNNNNNGTC	1 cut(s)	505
AhlI	ACTAGT	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	3 cut(s)	263, 383, 585
AluI	AGCT	3 cut(s)	263, 383, 585
AoxI	GGCC	2 cut(s)	238, 320
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
Asp718I	GGTACC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	238, 340
AsuHPI	GGTGA	2 cut(s)	193, 361
AvaII	GGWCC	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	2 cut(s)	241, 448
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	462
BcuI	ACTAGT	1 cut(s)	517
BfaI	CTAG	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	1 cut(s)	340
BmeRI	GACNNNNNGTC	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	238, 340
BmiI	GGNNCC	2 cut(s)	284, 459
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	4 cut(s)	45, 288, 567, 573
BmuI	ACTGGG	1 cut(s)	281
BoxI	GACNNNNGTC	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	384
Bsa29I	ATCGAT	1 cut(s)	544
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 308
Bse1I	ACTGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	247, 308
BseMII	CTCAG	4 cut(s)	146, 204, 308, 585
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	540
Bsh1285I	CGRYCG	1 cut(s)	544
BshFI	GGCC	2 cut(s)	240, 322
BshNI	GGYRCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	544
BsiEI	CGRYCG	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	247, 308
BsnI	GGCC	2 cut(s)	240, 322
Bsp143I	GATC	2 cut(s)	541, 545
Bsp68I	TCGCGA	1 cut(s)	540
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	240, 322
BspCNI	CTCAG	4 cut(s)	147, 203, 307, 586
BspDI	ATCGAT	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	284, 459
BspMI	ACCTGC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	2 cut(s)	541, 545
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	2 cut(s)	19, 328
BstACI	GRCGYC	1 cut(s)	84
BstDEI	CTNAG	6 cut(s)	155, 190, 294, 375, 384, 594
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	459
BstFNI	CGCG	1 cut(s)	540
BstKTI	GATC	2 cut(s)	544, 548
BstMBI	GATC	2 cut(s)	541, 545
BstMCI	CGRYCG	1 cut(s)	544
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	1 cut(s)	462
BstPAI	GACNNNNGTC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	460
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	240, 322
BsuTUI	ATCGAT	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	459
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
BtuMI	TCGCGA	1 cut(s)	540
BveI	ACCTGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	238, 340
ClaI	ATCGAT	1 cut(s)	544
CsiI	ACCWGGT	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	2 cut(s)	468, 572
CviJI	RGCY	6 cut(s)	240, 263, 322, 383, 392, 585
CviKI_1	RGCY	6 cut(s)	240, 263, 322, 383, 392, 585
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	6 cut(s)	155, 190, 294, 375, 384, 594
DpnI	GATC	2 cut(s)	543, 547
DpnII	GATC	2 cut(s)	541, 545
DriI	GACNNNNNGTC	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	320
Eam1105I	GACNNNNNGTC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	560
FaeI	CATG	2 cut(s)	471, 575
FatI	CATG	2 cut(s)	467, 571
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	240, 322
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	471, 575
HinfI	GANTC	4 cut(s)	179, 227, 475, 485
HphI	GGTGA	2 cut(s)	193, 361
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	5 cut(s)	47, 193, 297, 397, 474
Hpy188III	TCNNGA	2 cut(s)	343, 539
Hpy8I	GTNNAC	1 cut(s)	529
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	19, 328
HpyCH4IV	ACGT	3 cut(s)	84, 150, 506
HpyCH4V	TGCA	4 cut(s)	131, 143, 558, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	6 cut(s)	155, 190, 294, 375, 384, 594
HpySE526I	ACGT	3 cut(s)	84, 150, 506
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	471, 575
KpnI	GGTACC	1 cut(s)	461
Kzo9I	GATC	2 cut(s)	541, 545
LmnI	GCTCC	1 cut(s)	590
LpnPI	CCDG	9 cut(s)	20, 44, 73, 153, 254, 300, 356, 447, 474
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	4 cut(s)	45, 288, 567, 573
MabI	ACCWGGT	1 cut(s)	460
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	3 cut(s)	84, 150, 506
MaeIII	GTNAC	3 cut(s)	95, 116, 199
MalI	GATC	2 cut(s)	543, 547
MboI	GATC	2 cut(s)	541, 545
MboII	GAAGA	3 cut(s)	227, 358, 540
MlsI	TGGCCA	1 cut(s)	322
MluCI	AATT	4 cut(s)	144, 275, 402, 578
MluNI	TGGCCA	1 cut(s)	322
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	7 cut(s)	41, 199, 250, 278, 382, 382, 391
Mox20I	TGGCCA	1 cut(s)	322
Mph1103I	ATGCAT	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	322
MseI	TTAA	2 cut(s)	147, 165
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	322
MspA1I	CMGCKG	2 cut(s)	263, 355
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	2 cut(s)	541, 545
NlaIII	CATG	2 cut(s)	471, 575
NlaIV	GGNNCC	2 cut(s)	284, 459
NmuCI	GTSAC	2 cut(s)	95, 199
NruI	TCGCGA	1 cut(s)	540
NsiI	ATGCAT	1 cut(s)	560
PfeI	GAWTC	3 cut(s)	179, 227, 485
PkrI	GCNGC	1 cut(s)	262
Ple19I	CGATCG	1 cut(s)	544
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
PshAI	GACNNNNGTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	284, 459
PspPI	GGNCC	2 cut(s)	238, 340
PvuI	CGATCG	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	263
RruI	TCGCGA	1 cut(s)	540
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	147, 165
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	541, 545
Sau96I	GGNCC	2 cut(s)	238, 340
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	1 cut(s)	462
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	4 cut(s)	45, 288, 567, 573
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	102
SpeI	ACTAGT	1 cut(s)	517
Sse9I	AATT	4 cut(s)	144, 275, 402, 578
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	2 cut(s)	19, 328
TaiI	ACGT	3 cut(s)	87, 153, 509
TaqI	TCGA	3 cut(s)	213, 429, 544
TasI	AATT	4 cut(s)	144, 275, 402, 578
TfiI	GAWTC	3 cut(s)	179, 227, 485
Tru1I	TTAA	2 cut(s)	147, 165
Tru9I	TTAA	2 cut(s)	147, 165
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	95, 199
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	2 cut(s)	95, 199
TspDTI	ATGAA	2 cut(s)	17, 456
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	340
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XspI	CTAG	1 cut(s)	518
ZraI	GACGTC	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.