Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004367.1

Orthogroup ID

OG0005850

Physical Location & Seq

Genomic Coordinates Forward (+)

32952 .. 36458

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004367.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ctgacactcaacctcaaacctggaaattgttacccaaaaaaaaccaaaaaaggattaaaaatgggaactttctcaaaaagtcccaaacttcaggttctgttcatcatagcttgcctattctctccctgtatcagcctcaagattggagagacgtgttccaaagacacagattgcgacgccggtttaagctgccaaacatgcgctgcaaatggtaatacccgacccagatgtacccggattcaacccaccaatcctacatctaaggtgaaaggtcttccctttaataattacacatggcttacgacccacaactcgtacgctcaagcaggggtgaggtcgtccaccggatcgttgattattgctccgatgaatcagaacgacaccgttacatctcagctcaaaaatggagttcgaggatttatgttggatatgtatgacttcaacaacgatatctggttatgtcactcaactgggggcacatgttacaatttcacagcatttagacctgctcttgacgtgctgaaagaaattcgagcatttttggaagcaaatccctcagagattgtcaccatttttattgaggattatgtaacatctccatcaggcttgtcaaaagtctttgattcagctggtttaaagacctatctgttccccctggctcggatgccaaaggatggaaatgattggccaactgttgatgatatggctaagaacaatcagaggttggtggtcttcacctctaagtcatcgaaggaggcctcagagggaattgcttacgagtggaactatgtcgtagaaaatcaatatggaaatggtgggatggtacctaattcatgtccgaatcgtgctgaatcatctcccatgaacacaacatcaaagtcactagttctggtgaactacttccgtgatattcccaatgcatcagcaacttgcgcagacaattcagctccattactgagcgagataaaaacttgttatgatgcagctgggaaacggtggccaaactttattgccgttgattattaccagaaaagtgatggtgggggagctgctgaagcagtggaccaatcaaatggtcaactgacatgtgggtgtgacagcattacatattgcaaggtgaatgctacaactggaaatgctacatttggttcatgtgatgtcccaaaacttgctccaccgccacctgcttccctcgccagcacacctccttcaggtcctagtagtaactttgctcctcggaatagcaaatcaatcctgttgaggtggttgtgtggaacaattttggctgccactctctcgatgcggatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

436

Amino Acids

47.17

Weight (kDa)

8.63

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36945
fragaria_vesca	FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200
malus_domestica	MD02G1173900.v1.1
prunus_persica	Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1
pyrus_communis	pycom02g14020 pycom15g24810
rosa_chinensis	RchiOBHm_Chr2g0105901
rosa_laevigata	RLG00000017468
rosa_multiflora	Rmu_sc0004367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00137590 Rroxscaffold_2G00137740
rosa_rugosa	Rorug02G0131700 Rorug02G0131800
rosa_samantha	Rh2AG182300 Rh2BG192300 Rh2CG186900 Rh2DG188800
rosa_wichuraiana	Rw2G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1192
Acc16I	TGCGCA	1 cut(s)	934
Acc36I	ACCTGC	2 cut(s)	514, 1192
Acc65I	GGTACC	1 cut(s)	823
AccB1I	GGYRCC	1 cut(s)	823
AccB7I	CCANNNNNTGG	1 cut(s)	674
AciI	CCGC	2 cut(s)	1178, 1303
AclWI	GGATC	1 cut(s)	355
AcoI	YGGCCR	2 cut(s)	686, 998
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	3 cut(s)	74, 1074, 1194
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	3 cut(s)	232, 317, 825
AfiI	CCNNNNNNNGG	3 cut(s)	660, 674, 1211
AflIII	ACRYGT	3 cut(s)	152, 479, 1085
AgsI	TTSAA	2 cut(s)	242, 442
AhlI	ACTAGT	1 cut(s)	883
AjiI	CACGTC	2 cut(s)	153, 517
AjnI	CCWGG	2 cut(s)	19, 654
AluBI	AGCT	7 cut(s)	110, 189, 397, 629, 947, 986, 1049
AluI	AGCT	7 cut(s)	110, 189, 397, 629, 947, 986, 1049
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	355
AlwNI	CAGNNNCTG	1 cut(s)	97
AoxI	GGCC	3 cut(s)	686, 756, 998
ApeKI	GCWGC	5 cut(s)	189, 203, 983, 1049, 1286
ApoI	RAATTY	1 cut(s)	528
Asp700I	GAANNNNTTC	1 cut(s)	899
Asp718I	GGTACC	1 cut(s)	823
AspLEI	GCGC	2 cut(s)	203, 935
AspS9I	GGNCC	2 cut(s)	1063, 1214
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	6 cut(s)	277, 343, 559, 727, 904, 1129
AvaII	GGWCC	2 cut(s)	1063, 1214
BaeGI	GKGCMC	1 cut(s)	479
BalI	TGGCCA	2 cut(s)	688, 1000
BanI	GGYRCC	1 cut(s)	823
BbsI	GAAGAC	2 cut(s)	266, 724
BbvI	GCAGC	5 cut(s)	176, 190, 995, 1036, 1273
BccI	CCATC	4 cut(s)	607, 668, 814, 1031
BceAI	ACGGC	1 cut(s)	998
BciT130I	CCWGG	2 cut(s)	21, 656
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	883
BfaI	CTAG	2 cut(s)	884, 1218
BfuAI	ACCTGC	2 cut(s)	514, 1192
BisI	GCNGC	5 cut(s)	190, 204, 984, 1050, 1287
BlsI	GCNGC	5 cut(s)	191, 205, 985, 1051, 1288
Bme1390I	CCNGG	3 cut(s)	21, 235, 656
Bme18I	GGWCC	2 cut(s)	1063, 1214
BmgBI	CACGTC	2 cut(s)	153, 517
BmgT120I	GGNCC	2 cut(s)	1063, 1214
BmiI	GGNNCC	1 cut(s)	825
BmrFI	CCNGG	3 cut(s)	21, 235, 656
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	4 cut(s)	654, 929, 970, 1290
BmuI	ACTGGG	1 cut(s)	480
BpiI	GAAGAC	2 cut(s)	266, 724
BpuEI	CTTGAG	2 cut(s)	122, 306
BpuMI	CCSGG	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	654, 1235
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	3 cut(s)	660, 674, 1211
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	475, 1135
BseBI	CCWGG	2 cut(s)	21, 656
BseDI	CCNNGG	2 cut(s)	654, 1235
BseGI	GGATG	3 cut(s)	669, 679, 825
BseLI	CCNNNNNNNGG	3 cut(s)	660, 674, 1211
BseMII	CTCAG	4 cut(s)	407, 570, 774, 947
BseNI	ACTGG	2 cut(s)	475, 1135
BseRI	GAGGAG	1 cut(s)	1224
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	5 cut(s)	176, 190, 995, 1036, 1273
BseYI	CCCAGC	1 cut(s)	986
BshFI	GGCC	3 cut(s)	688, 758, 1000
BshNI	GGYRCC	1 cut(s)	823
BsiSI	CCGG	3 cut(s)	180, 235, 345
BsiWI	CGTACG	1 cut(s)	315
BslFI	GGGAC	2 cut(s)	66, 1145
BslI	CCNNNNNNNGG	3 cut(s)	660, 674, 1211
BsmAI	GTCTC	1 cut(s)	143
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	66, 1145
BsmI	GAATGC	1 cut(s)	1126
BsnI	GGCC	3 cut(s)	688, 758, 1000
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	1 cut(s)	347
BspACI	CCGC	2 cut(s)	1178, 1303
BspANI	GGCC	3 cut(s)	688, 758, 1000
BspCNI	CTCAG	4 cut(s)	406, 569, 773, 948
BspLI	GGNNCC	1 cut(s)	825
BspMI	ACCTGC	2 cut(s)	514, 1192
BspPI	GGATC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	823
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	475, 1135
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	654, 1235
BssMI	GATC	1 cut(s)	347
BssNI	GRCGYC	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	21, 656
Bst4CI	ACNGT	3 cut(s)	385, 694, 996
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	112, 1198
BstDEI	CTNAG	7 cut(s)	261, 393, 556, 708, 741, 760, 956
BstENI	CCTNNNNNAGG	1 cut(s)	1209
BstF5I	GGATG	3 cut(s)	669, 679, 825
BstHHI	GCGC	2 cut(s)	203, 935
BstKTI	GATC	1 cut(s)	350
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 932, 1055, 1193
BstNI	CCWGG	2 cut(s)	21, 656
BstNSI	RCATGY	3 cut(s)	201, 483, 1089
BstSCI	CCNGG	3 cut(s)	19, 233, 654
BstSLI	GKGCMC	1 cut(s)	479
BstV1I	GCAGC	5 cut(s)	176, 190, 995, 1036, 1273
BstV2I	GAAGAC	2 cut(s)	266, 724
BstXI	CCANNNNNNTGG	1 cut(s)	1073
BsuRI	GGCC	3 cut(s)	688, 758, 1000
BtrI	CACGTC	2 cut(s)	153, 517
BtsCI	GGATG	3 cut(s)	669, 679, 825
BtsI	GCAGTG	1 cut(s)	1065
BtsIMutI	CAGTG	1 cut(s)	1065
BveI	ACCTGC	2 cut(s)	514, 1192
Cac8I	GCNNGC	2 cut(s)	112, 1198
CaiI	CAGNNNCTG	1 cut(s)	97
CfoI	GCGC	2 cut(s)	203, 935
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	1063, 1214
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	231, 316, 824
CviAII	CATG	7 cut(s)	198, 294, 480, 834, 862, 1086, 1152
CviQI	GTAC	3 cut(s)	231, 316, 824
DdeI	CTNAG	7 cut(s)	261, 393, 556, 708, 741, 760, 956
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
DraI	TTTAAA	1 cut(s)	636
EaeI	YGGCCR	2 cut(s)	686, 998
Eco147I	AGGCCT	1 cut(s)	758
Eco32I	GATATC	1 cut(s)	451
Eco47I	GGWCC	2 cut(s)	1063, 1214
Eco57I	CTGAAG	3 cut(s)	74, 1074, 1194
EcoNI	CCTNNNNNAGG	1 cut(s)	1209
EcoO109I	RGGNCCY	1 cut(s)	1214
EcoRII	CCWGG	2 cut(s)	19, 654
EcoRV	GATATC	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	922
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	7 cut(s)	201, 297, 483, 837, 865, 1089, 1155
FaqI	GGGAC	2 cut(s)	66, 1145
FatI	CATG	7 cut(s)	197, 293, 479, 833, 861, 1085, 1151
Fnu4HI	GCNGC	5 cut(s)	190, 204, 984, 1050, 1287
FokI	GGATG	3 cut(s)	676, 686, 832
Fsp4HI	GCNGC	5 cut(s)	190, 204, 984, 1050, 1287
FspBI	CTAG	2 cut(s)	884, 1218
FspI	TGCGCA	1 cut(s)	934
GlaI	GCGC	2 cut(s)	202, 934
GluI	GCNGC	5 cut(s)	190, 204, 984, 1050, 1287
GsaI	CCCAGC	1 cut(s)	990
HaeIII	GGCC	3 cut(s)	688, 758, 1000
HapII	CCGG	3 cut(s)	180, 235, 345
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	203, 935
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	7 cut(s)	201, 297, 483, 837, 865, 1089, 1155
Hin6I	GCGC	2 cut(s)	201, 933
HinP1I	GCGC	2 cut(s)	201, 933
HincII	GTYRAC	1 cut(s)	1079
HindII	GTYRAC	1 cut(s)	1079
HinfI	GANTC	5 cut(s)	238, 370, 623, 841, 851
HpaII	CCGG	3 cut(s)	180, 235, 345
HphI	GGTGA	6 cut(s)	277, 343, 559, 727, 904, 1129
Hpy166II	GTNNAC	4 cut(s)	342, 895, 1063, 1079
Hpy188I	TCNGA	8 cut(s)	366, 375, 559, 663, 720, 763, 840, 1239
Hpy188III	TCNNGA	3 cut(s)	139, 512, 1297
Hpy8I	GTNNAC	4 cut(s)	342, 895, 1063, 1079
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	745, 1218
HpyCH4III	ACNGT	3 cut(s)	385, 694, 996
HpyCH4IV	ACGT	2 cut(s)	152, 516
HpyCH4V	TGCA	4 cut(s)	206, 920, 983, 1113
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 932, 1055, 1193
HpyF3I	CTNAG	7 cut(s)	261, 393, 556, 708, 741, 760, 956
HpySE526I	ACGT	2 cut(s)	152, 516
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	7 cut(s)	201, 297, 483, 837, 865, 1089, 1155
HspAI	GCGC	2 cut(s)	201, 933
KpnI	GGTACC	1 cut(s)	827
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	5 cut(s)	367, 952, 1046, 1177, 1237
Lsp1109I	GCAGC	5 cut(s)	176, 190, 995, 1036, 1273
LweI	GCATC	4 cut(s)	654, 929, 970, 1290
MaeI	CTAG	2 cut(s)	884, 1218
MaeII	ACGT	2 cut(s)	152, 516
MaeIII	GTNAC	9 cut(s)	29, 385, 461, 482, 565, 589, 879, 1094, 1223
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	2 cut(s)	266, 724
MhlI	GDGCHC	1 cut(s)	479
MlsI	TGGCCA	2 cut(s)	688, 1000
MluCI	AATT	8 cut(s)	25, 286, 487, 528, 768, 829, 940, 1278
MluNI	TGGCCA	2 cut(s)	688, 1000
MmeI	TCCRAC	1 cut(s)	405
Mox20I	TGGCCA	2 cut(s)	688, 1000
Mph1103I	ATGCAT	1 cut(s)	922
MroXI	GAANNNNTTC	1 cut(s)	899
MscI	TGGCCA	2 cut(s)	688, 1000
MseI	TTAA	4 cut(s)	56, 185, 282, 635
MslI	CAYNNNNRTG	1 cut(s)	1090
Msp20I	TGGCCA	2 cut(s)	688, 1000
MspA1I	CMGCKG	2 cut(s)	629, 986
MspI	CCGG	3 cut(s)	180, 235, 345
MspR9I	CCNGG	3 cut(s)	21, 235, 656
Mva1269I	GAATGC	1 cut(s)	1126
MvaI	CCWGG	2 cut(s)	21, 656
MwoI	GCNNNNNNNGC	4 cut(s)	198, 932, 1055, 1193
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	7 cut(s)	201, 297, 483, 837, 865, 1089, 1155
NlaIV	GGNNCC	1 cut(s)	825
NmuCI	GTSAC	4 cut(s)	461, 565, 879, 1094
NsbI	TGCGCA	1 cut(s)	934
NsiI	ATGCAT	1 cut(s)	922
NspI	RCATGY	3 cut(s)	201, 483, 1089
PaqCI	CACCTGC	1 cut(s)	1192
PceI	AGGCCT	1 cut(s)	758
PciI	ACATGT	2 cut(s)	479, 1085
PctI	GAATGC	1 cut(s)	1126
PdmI	GAANNNNTTC	1 cut(s)	899
PfeI	GAWTC	5 cut(s)	238, 370, 623, 841, 851
Pfl23II	CGTACG	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	5 cut(s)	191, 205, 985, 1051, 1288
PpuMI	RGGWCCY	1 cut(s)	1214
PscI	ACATGT	2 cut(s)	479, 1085
Psp5II	RGGWCCY	1 cut(s)	1214
Psp6I	CCWGG	2 cut(s)	19, 654
PspFI	CCCAGC	1 cut(s)	986
PspGI	CCWGG	2 cut(s)	19, 654
PspLI	CGTACG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	825
PspPI	GGNCC	2 cut(s)	1063, 1214
PspPPI	RGGWCCY	1 cut(s)	1214
PstNI	CAGNNNCTG	1 cut(s)	97
PvuII	CAGCTG	2 cut(s)	629, 986
RsaI	GTAC	3 cut(s)	232, 317, 825
RsaNI	GTAC	3 cut(s)	231, 316, 824
RseI	CAYNNNNRTG	1 cut(s)	1090
SaqAI	TTAA	4 cut(s)	56, 185, 282, 635
SatI	GCNGC	5 cut(s)	190, 204, 984, 1050, 1287
Sau3AI	GATC	1 cut(s)	347
Sau96I	GGNCC	2 cut(s)	1063, 1214
ScrFI	CCNGG	3 cut(s)	21, 235, 656
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	4 cut(s)	654, 929, 970, 1290
SinI	GGWCC	2 cut(s)	1063, 1214
SmiMI	CAYNNNNRTG	1 cut(s)	1090
SmlI	CTYRAG	2 cut(s)	137, 321
SmoI	CTYRAG	2 cut(s)	137, 321
SpeI	ACTAGT	1 cut(s)	883
Sse9I	AATT	8 cut(s)	25, 286, 487, 528, 768, 829, 940, 1278
SseBI	AGGCCT	1 cut(s)	758
SsiI	CCGC	2 cut(s)	1178, 1303
SspMI	CTAG	2 cut(s)	884, 1218
StuI	AGGCCT	1 cut(s)	758
StyD4I	CCNGG	3 cut(s)	19, 233, 654
TaaI	ACNGT	3 cut(s)	385, 694, 996
TaiI	ACGT	2 cut(s)	155, 519
TaqI	TCGA	4 cut(s)	412, 532, 749, 1298
TasI	AATT	8 cut(s)	25, 286, 487, 528, 768, 829, 940, 1278
TfiI	GAWTC	5 cut(s)	238, 370, 623, 841, 851
Tru1I	TTAA	4 cut(s)	56, 185, 282, 635
Tru9I	TTAA	4 cut(s)	56, 185, 282, 635
TscAI	CASTG	1 cut(s)	1065
TseFI	GTSAC	4 cut(s)	461, 565, 879, 1094
TseI	GCWGC	5 cut(s)	189, 203, 983, 1049, 1286
Tsp45I	GTSAC	4 cut(s)	461, 565, 879, 1094
TspDTI	ATGAA	5 cut(s)	91, 383, 822, 878, 1140
TspGWI	ACGGA	1 cut(s)	893
TspRI	CASTG	1 cut(s)	1065
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	2 cut(s)	1063, 1214
XagI	CCTNNNNNAGG	1 cut(s)	1209
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	3 cut(s)	201, 483, 1089
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1034
XmnI	GAANNNNTTC	1 cut(s)	899
XspI	CTAG	2 cut(s)	884, 1218
Zsp2I	ATGCAT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.