Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005850

Physical Location & Seq

Genomic Coordinates Reverse (-)

15082681 .. 15086633

Gene Structure 3953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G131800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGGAACTTTATTAATGAAGCGCCAGCTTCAAGCTCTGTTCATCGCAGTTTGCCTATTTTGTTCCTCTTCCTGTCTCAAGATCGGAGAGACTTGTTCCAAAGACAGCGACTGCGACGGCGGGTTGAGCTGCCAAACATGCGCTGCAAATGGAAACACCCGACCCAGATGTACCCGGATTCAACCCACAAGTCCCACATCGAAGGTGAAAGGTCTGCCATTTAATCGGTATTCATGGCTAACCACCCACAACTCATTCGCTCAAGCTGGGGTGAGGTCAGCCACTGGATCCTTGCTTGTTACTCCGATGAACCAGAATGACACCGTAGCCTCTCAACTCAAAAACGGAGTTCGAGGCCTTATGCTGGATATGTATGACTTCAACAACGACATCTGGTTATGTCACTCAACTGGTGGCAAATGTTACAACTTAACAGCATTTCAACCTGCTATTAATGTGCTGAAAGATATTCAAGCGTTTTTGGAAGCAAACCCCTCAGAGATTGTCACCATTTTTATTGAAGATTATGTAGAATCTCCACAGGGCTTAACAAAGGTCTTTGAAGCAGCTGGGCTTAAAAAGTATTTGTTCCCGGTTGCTCAGATGCCAAAGAATGGGGAAGATTGGCCAACCGTGGATGATATGGTCAAGAACAATCTGAGGCTGGTGGTCTTCACCTCTAAGTCGGCTAAGGAGGCTTCAGAGGGAATTGCTTATGAGTGGAACTACGTGGTAGAAAATCAATATGGAAATGGTGGGATGACACCTGGTTCATGTCCGAATCGTGCTGAATCATCTCCCATGAACACAAAATCTAGATCACTAGTTCTCGTGAACTTTTTTCGCGATCTCCCCAACGCATCCGCGTCTTGCATGGACAATTCAGCTTCCTTACTGAGCGCGTCGAAAGGTTGTTATGAAGCAGCAGGGAAACGGTGGCCAAACTTCATTGCTGTTGATTATTATGAGAAAAGTGATGGTGGGGGAGCCCCAGAAGCAGTGGATGAAGCAAATGGCCATCTCACATGTGGGTGTGACAGAATTACATATTGCAAGGGAAATGGTAGTAATGCTACATTTGGTCAATGCGACGTCCCAACACTTGCTCCGCCACCACCTGCGGCTGCCACCACCACCAGTCCTCAATCTCAATCTCCCAGTAACTTTGCTTCTCAGGATACATCAGTCCAGTTACTGTGGCTGTGTGGAACAATTTTGGCCACGACTCTCTCAATTTGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

415

Amino Acids

44.68

Weight (kDa)

5.75

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36945
fragaria_vesca	FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200
malus_domestica	MD02G1173900.v1.1
prunus_persica	Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1
pyrus_communis	pycom02g14020 pycom15g24810
rosa_chinensis	RchiOBHm_Chr2g0105901
rosa_laevigata	RLG00000017468
rosa_multiflora	Rmu_sc0004367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00137590 Rroxscaffold_2G00137740
rosa_rugosa	Rorug02G0131700 Rorug02G0131800
rosa_samantha	Rh2AG182300 Rh2BG192300 Rh2CG186900 Rh2DG188800
rosa_wichuraiana	Rw2G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1126
AatII	GACGTC	1 cut(s)	1095
Acc36I	ACCTGC	2 cut(s)	454, 1126
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccII	CGCG	3 cut(s)	846, 866, 902
AciI	CCGC	4 cut(s)	120, 864, 1109, 1121
AclWI	GGATC	2 cut(s)	282, 295
AcoI	YGGCCR	4 cut(s)	626, 938, 1015, 1218
AcuI	CTGAAG	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	1092
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	2 cut(s)	364, 614
AflIII	ACRYGT	1 cut(s)	1025
AgsI	TTSAA	7 cut(s)	32, 182, 382, 443, 473, 521, 563
AhlI	ACTAGT	1 cut(s)	823
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	6 cut(s)	28, 35, 129, 266, 569, 887
AluI	AGCT	6 cut(s)	28, 35, 129, 266, 569, 887
Alw26I	GTCTC	2 cut(s)	80, 83
AlwI	GGATC	2 cut(s)	282, 295
AlwNI	CAGNNNCTG	3 cut(s)	111, 284, 1195
AoxI	GGCC	5 cut(s)	355, 626, 938, 1015, 1218
ApeKI	GCWGC	5 cut(s)	129, 143, 566, 923, 1124
AseI	ATTAAT	2 cut(s)	14, 453
AspLEI	GCGC	3 cut(s)	24, 143, 902
AsuC2I	CCSGG	2 cut(s)	175, 593
AsuHPI	GGTGA	4 cut(s)	217, 283, 499, 667
BaeI	ACNNNNGTAYC	2 cut(s)	1170, 1203
BalI	TGGCCA	4 cut(s)	628, 940, 1017, 1220
BamHI	GGATCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	991
BarI	GAAGNNNNNNTAC	2 cut(s)	1153, 1185
BauI	CACGAG	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	664
BbvI	GCAGC	5 cut(s)	116, 130, 578, 935, 1111
BccI	CCATC	2 cut(s)	971, 1026
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	768
BciVI	GTATCC	1 cut(s)	1171
BcnI	CCSGG	2 cut(s)	175, 593
BcoDI	GTCTC	2 cut(s)	80, 83
BcuI	ACTAGT	1 cut(s)	823
BfaI	CTAG	2 cut(s)	816, 824
BfoI	RGCGCY	1 cut(s)	25
BfuAI	ACCTGC	2 cut(s)	454, 1126
BfuI	GTATCC	1 cut(s)	1171
BisI	GCNGC	6 cut(s)	130, 144, 567, 924, 1122, 1125
BlsI	GCNGC	6 cut(s)	131, 145, 568, 925, 1123, 1126
Bme1390I	CCNGG	3 cut(s)	175, 593, 768
BmiI	GGNNCC	2 cut(s)	289, 988
BmrFI	CCNGG	3 cut(s)	175, 593, 768
BmrI	ACTGGG	1 cut(s)	1152
BmsI	GCATC	2 cut(s)	594, 869
BmuI	ACTGGG	1 cut(s)	1152
BpiI	GAAGAC	1 cut(s)	664
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	62, 246
BpuMI	CCSGG	2 cut(s)	175, 593
BsaAI	YACGTR	1 cut(s)	730
BsaHI	GRCGYC	1 cut(s)	1092
BsaJI	CCNNGG	1 cut(s)	633
BsaXI	ACNNNNNCTCC	2 cut(s)	1090, 1120
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 614
Bse1I	ACTGG	5 cut(s)	289, 415, 1137, 1158, 1189
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	4 cut(s)	643, 765, 860, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	364, 614
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	5 cut(s)	510, 614, 650, 887, 1187
BseNI	ACTGG	5 cut(s)	289, 415, 1137, 1158, 1189
BseXI	GCAGC	5 cut(s)	116, 130, 578, 935, 1111
BseYI	CCCAGC	2 cut(s)	266, 569
Bsh1236I	CGCG	3 cut(s)	846, 866, 902
BshFI	GGCC	5 cut(s)	357, 628, 940, 1017, 1220
BsiSI	CCGG	2 cut(s)	175, 593
BslFI	GGGAC	2 cut(s)	177, 1079
BslI	CCNNNNNNNGG	2 cut(s)	364, 614
BsmAI	GTCTC	2 cut(s)	80, 83
BsmFI	GGGAC	2 cut(s)	177, 1079
BsnI	GGCC	5 cut(s)	357, 628, 940, 1017, 1220
Bsp1286I	GDGCHC	1 cut(s)	991
Bsp143I	GATC	4 cut(s)	81, 287, 818, 847
Bsp68I	TCGCGA	1 cut(s)	846
BspACI	CCGC	4 cut(s)	120, 864, 1109, 1121
BspANI	GGCC	5 cut(s)	357, 628, 940, 1017, 1220
BspCNI	CTCAG	5 cut(s)	509, 613, 651, 888, 1186
BspFNI	CGCG	3 cut(s)	846, 866, 902
BspLI	GGNNCC	2 cut(s)	289, 988
BspMI	ACCTGC	2 cut(s)	454, 1126
BspPI	GGATC	2 cut(s)	282, 295
BsrDI	GCAATG	1 cut(s)	948
BsrI	ACTGG	5 cut(s)	289, 415, 1137, 1158, 1189
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	4 cut(s)	81, 287, 818, 847
BssNI	GRCGYC	1 cut(s)	1092
BssSI	CACGAG	1 cut(s)	830
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	4 cut(s)	325, 634, 936, 1197
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	1092
BstBAI	YACGTR	1 cut(s)	730
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	7 cut(s)	496, 600, 659, 681, 690, 896, 1173
BstDSI	CCRYGG	1 cut(s)	633
BstF5I	GGATG	4 cut(s)	643, 765, 860, 1009
BstFNI	CGCG	3 cut(s)	846, 866, 902
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	3 cut(s)	24, 143, 902
BstKTI	GATC	4 cut(s)	84, 290, 821, 850
BstMAI	GTCTC	2 cut(s)	80, 83
BstMBI	GATC	4 cut(s)	81, 287, 818, 847
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 138, 695, 995
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	2 cut(s)	141, 1029
BstSCI	CCNGG	3 cut(s)	173, 591, 766
BstUI	CGCG	3 cut(s)	846, 866, 902
BstV1I	GCAGC	5 cut(s)	116, 130, 578, 935, 1111
BstV2I	GAAGAC	1 cut(s)	664
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	1171
BsuRI	GGCC	5 cut(s)	357, 628, 940, 1017, 1220
BtgI	CCRYGG	1 cut(s)	633
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	4 cut(s)	643, 765, 860, 1009
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	2 cut(s)	282, 1005
BtuMI	TCGCGA	1 cut(s)	846
BveI	ACCTGC	2 cut(s)	454, 1126
Cac8I	GCNNGC	1 cut(s)	26
CaiI	CAGNNNCTG	3 cut(s)	111, 284, 1195
CfoI	GCGC	3 cut(s)	24, 143, 902
CseI	GACGC	2 cut(s)	855, 891
CsiI	ACCWGGT	1 cut(s)	766
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	6 cut(s)	138, 234, 774, 802, 874, 1026
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	7 cut(s)	496, 600, 659, 681, 690, 896, 1173
DpnI	GATC	4 cut(s)	83, 289, 820, 849
DpnII	GATC	4 cut(s)	81, 287, 818, 847
EaeI	YGGCCR	4 cut(s)	626, 938, 1015, 1218
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	1098
Eco147I	AGGCCT	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	991
Eco57I	CTGAAG	1 cut(s)	684
EcoRII	CCWGG	1 cut(s)	766
EcoT38I	GRGCYC	1 cut(s)	991
FaeI	CATG	6 cut(s)	141, 237, 777, 805, 877, 1029
FaqI	GGGAC	2 cut(s)	177, 1079
FatI	CATG	6 cut(s)	137, 233, 773, 801, 873, 1025
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	6 cut(s)	130, 144, 567, 924, 1122, 1125
FokI	GGATG	4 cut(s)	650, 772, 847, 1016
FriOI	GRGCYC	1 cut(s)	991
Fsp4HI	GCNGC	6 cut(s)	130, 144, 567, 924, 1122, 1125
FspBI	CTAG	2 cut(s)	816, 824
GlaI	GCGC	3 cut(s)	23, 142, 901
GluI	GCNGC	6 cut(s)	130, 144, 567, 924, 1122, 1125
GsaI	CCCAGC	2 cut(s)	270, 573
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	5 cut(s)	357, 628, 940, 1017, 1220
HapII	CCGG	2 cut(s)	175, 593
HgaI	GACGC	2 cut(s)	855, 891
HhaI	GCGC	3 cut(s)	24, 143, 902
Hin1I	GRCGYC	1 cut(s)	1092
Hin1II	CATG	6 cut(s)	141, 237, 777, 805, 877, 1029
Hin6I	GCGC	3 cut(s)	22, 141, 900
HinP1I	GCGC	3 cut(s)	22, 141, 900
HinfI	GANTC	5 cut(s)	178, 533, 781, 791, 1225
HpaII	CCGG	2 cut(s)	175, 593
HphI	GGTGA	4 cut(s)	217, 283, 499, 667
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	7 cut(s)	86, 306, 499, 603, 660, 703, 780
Hpy188III	TCNNGA	6 cut(s)	79, 649, 816, 832, 845, 1175
Hpy8I	GTNNAC	1 cut(s)	835
Hpy99I	CGWCG	3 cut(s)	119, 907, 1094
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	4 cut(s)	325, 634, 936, 1197
HpyCH4IV	ACGT	2 cut(s)	729, 1092
HpyCH4V	TGCA	3 cut(s)	146, 873, 1053
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 138, 695, 995
HpyF3I	CTNAG	7 cut(s)	496, 600, 659, 681, 690, 896, 1173
HpySE526I	ACGT	2 cut(s)	729, 1092
Hsp92I	GRCGYC	1 cut(s)	1092
Hsp92II	CATG	6 cut(s)	141, 237, 777, 805, 877, 1029
HspAI	GCGC	3 cut(s)	22, 141, 900
Kzo9I	GATC	4 cut(s)	81, 287, 818, 847
LmnI	GCTCC	2 cut(s)	986, 1111
Lsp1109I	GCAGC	5 cut(s)	116, 130, 578, 935, 1111
LweI	GCATC	2 cut(s)	594, 869
MabI	ACCWGGT	1 cut(s)	766
MaeI	CTAG	2 cut(s)	816, 824
MaeII	ACGT	2 cut(s)	729, 1092
MaeIII	GTNAC	7 cut(s)	298, 401, 422, 505, 1034, 1160, 1191
MalI	GATC	4 cut(s)	83, 289, 820, 849
MboI	GATC	4 cut(s)	81, 287, 818, 847
MboII	GAAGA	4 cut(s)	60, 533, 632, 664
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	991
MlsI	TGGCCA	4 cut(s)	628, 940, 1017, 1220
MluCI	AATT	5 cut(s)	708, 880, 1041, 1212, 1233
MluNI	TGGCCA	4 cut(s)	628, 940, 1017, 1220
MlyI	GAGTC	1 cut(s)	1219
Mox20I	TGGCCA	4 cut(s)	628, 940, 1017, 1220
MscI	TGGCCA	4 cut(s)	628, 940, 1017, 1220
MseI	TTAA	6 cut(s)	14, 222, 431, 453, 548, 576
MslI	CAYNNNNRTG	1 cut(s)	1030
Msp20I	TGGCCA	4 cut(s)	628, 940, 1017, 1220
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	2 cut(s)	175, 593
MspR9I	CCNGG	3 cut(s)	175, 593, 768
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	3 cut(s)	846, 866, 902
MwoI	GCNNNNNNNGC	4 cut(s)	126, 138, 695, 995
NciI	CCSGG	2 cut(s)	175, 593
NdeII	GATC	4 cut(s)	81, 287, 818, 847
NlaIII	CATG	6 cut(s)	141, 237, 777, 805, 877, 1029
NlaIV	GGNNCC	2 cut(s)	289, 988
NmuCI	GTSAC	3 cut(s)	401, 505, 1034
NruI	TCGCGA	1 cut(s)	846
NspI	RCATGY	2 cut(s)	141, 1029
PaqCI	CACCTGC	1 cut(s)	1126
PceI	AGGCCT	1 cut(s)	357
PciI	ACATGT	1 cut(s)	1025
PfeI	GAWTC	4 cut(s)	178, 533, 781, 791
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	6 cut(s)	131, 145, 568, 925, 1123, 1126
PleI	GAGTC	1 cut(s)	1219
PpsI	GAGTC	1 cut(s)	1219
Ppu21I	YACGTR	1 cut(s)	730
PscI	ACATGT	1 cut(s)	1025
PshBI	ATTAAT	2 cut(s)	14, 453
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	2 cut(s)	266, 569
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	2 cut(s)	289, 988
PstNI	CAGNNNCTG	3 cut(s)	111, 284, 1195
PsuI	RGATCY	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	569
RruI	TCGCGA	1 cut(s)	846
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	1030
SaqAI	TTAA	6 cut(s)	14, 222, 431, 453, 548, 576
SatI	GCNGC	6 cut(s)	130, 144, 567, 924, 1122, 1125
Sau3AI	GATC	4 cut(s)	81, 287, 818, 847
SchI	GAGTC	1 cut(s)	1219
ScrFI	CCNGG	3 cut(s)	175, 593, 768
SduI	GDGCHC	1 cut(s)	991
SexAI	ACCWGGT	1 cut(s)	766
SfaNI	GCATC	2 cut(s)	594, 869
SmiMI	CAYNNNNRTG	1 cut(s)	1030
SmlI	CTYRAG	2 cut(s)	77, 261
SmoI	CTYRAG	2 cut(s)	77, 261
SpeI	ACTAGT	1 cut(s)	823
Sse9I	AATT	5 cut(s)	708, 880, 1041, 1212, 1233
SseBI	AGGCCT	1 cut(s)	357
SsiI	CCGC	4 cut(s)	120, 864, 1109, 1121
SspMI	CTAG	2 cut(s)	816, 824
StuI	AGGCCT	1 cut(s)	357
StyD4I	CCNGG	3 cut(s)	173, 591, 766
TaaI	ACNGT	4 cut(s)	325, 634, 936, 1197
TaiI	ACGT	2 cut(s)	732, 1095
TaqI	TCGA	3 cut(s)	200, 352, 905
TasI	AATT	5 cut(s)	708, 880, 1041, 1212, 1233
TauI	GCSGC	1 cut(s)	1124
TfiI	GAWTC	4 cut(s)	178, 533, 781, 791
Tru1I	TTAA	6 cut(s)	14, 222, 431, 453, 548, 576
Tru9I	TTAA	6 cut(s)	14, 222, 431, 453, 548, 576
TscAI	CASTG	2 cut(s)	289, 1005
TseFI	GTSAC	3 cut(s)	401, 505, 1034
TseI	GCWGC	5 cut(s)	129, 143, 566, 923, 1124
Tsp45I	GTSAC	3 cut(s)	401, 505, 1034
TspDTI	ATGAA	9 cut(s)	31, 32, 222, 323, 762, 818, 933, 937, 1020
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	289, 1005
Van91I	CCANNNNNTGG	1 cut(s)	614
VspI	ATTAAT	2 cut(s)	14, 453
XbaI	TCTAGA	1 cut(s)	815
XceI	RCATGY	2 cut(s)	141, 1029
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1025
XspI	CTAG	2 cut(s)	816, 824
ZraI	GACGTC	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.