Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005850

Physical Location & Seq

Genomic Coordinates Forward (+)

9271638 .. 9276151

Gene Structure 4514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16200.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGAACTTTCTTAGAAAGTCCCAAACTTCAAGCTCTGTTCATCATAGCTTTCCTATTCTCACCCTCTATTAGCCTCAAGATCGGAGAGACTTGTTCCGTAGATAAAGATTGCGACGCCGGTTTAAGCTGCCAAACATGCGCTGCAAATGGTAATACCCGACCCAGATGTACCCGGATTCAACCCACCAATCCTACATCTAAGGTGAAAGGTCTTCCCTTTAATAAGTACACATGGCTTACGACCCACAACTCGTACGCTCAAGCTGGGGTGAGATCGTCCACCGGAAATATTATCTTCGCTCCGATGAACCAAAACGACACCGTTACATCTCAGCTTCAAAATGGAGTTCGAGGATTTATGTTGGATATGTATGATTTTCAAAACGACATCTGGTTATGTCACTCAAGTGGGGGCAAATGTTACACTTTCACAGCATTTAAACTTGCTGTTGATGTGCTGAAAGAAATTCAAGCATTCCTGGTAGCAAATCCCTCAGAGATTGTCACCATTTTTATTGAGGATTATGTAACATCTCCATCAGGCTTGTCAAAAGTCTTTGATGCAGCTGGCTTGAAAACCTACATGTTCCCAATTTCTCGGATGCCAAAGGATGGTAAAGATTGGCCAACCGTTGATGATATGGCTAAGAACAATCAGAGGTTGGTGGTCTTCACCTCTAAGTCATCTAAGGAGGCTTCAGACGGGATTGCTTACGAGTGGAACTATGTCGTAGAAAATCAATATGGAAATGGTGGGATGGTACTTAATTCATGTCCGAATCGTGCTGAATCGTCTCCCATGAACACAACTTCTAAGCCACTAGTTCTGGTGAACTATTTCCGTGATGTTCCCAATGCATCAGCCACTTGTGTAGACAATTCAGCTCCATTACTGCGCACGTTAAAAACTTGTTATGATGCAGCTGGGAAACGGTGGCCAAACTTCATTGCTGTTGATTATTACCAGAAAAGTGATGGTGGGGGAGCTGCTGAAGCAGTGGATAAATCAAACGGTCAACTGACATGTGGGTGTGACAGCATTACATATTGCAAGGTCCTAGTAGTAACTTTGCTTCTCAGAATAGCAAATCTGTTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

368

Amino Acids

40.2

Weight (kDa)

7.84

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	1 - 221	1.4e-121	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	2 - 220	5.2e-25	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36945
fragaria_vesca	FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200
malus_domestica	MD02G1173900.v1.1
prunus_persica	Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1
pyrus_communis	pycom02g14020 pycom15g24810
rosa_chinensis	RchiOBHm_Chr2g0105901
rosa_laevigata	RLG00000017468
rosa_multiflora	Rmu_sc0004367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00137590 Rroxscaffold_2G00137740
rosa_rugosa	Rorug02G0131700 Rorug02G0131800
rosa_samantha	Rh2AG182300 Rh2BG192300 Rh2CG186900 Rh2DG188800
rosa_wichuraiana	Rw2G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	899
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	876
AcoI	YGGCCR	2 cut(s)	626, 938
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	2 cut(s)	684, 1014
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	4 cut(s)	172, 230, 257, 765
AfiI	CCNNNNNNNGG	1 cut(s)	614
AflIII	ACRYGT	2 cut(s)	585, 1025
AgsI	TTSAA	6 cut(s)	32, 182, 341, 383, 473, 577
AhlI	ACTAGT	1 cut(s)	823
AjnI	CCWGG	1 cut(s)	480
AleI	CACNNNNGTG	1 cut(s)	408
AluBI	AGCT	9 cut(s)	35, 50, 129, 266, 337, 569, 887, 926, 989
AluI	AGCT	9 cut(s)	35, 50, 129, 266, 337, 569, 887, 926, 989
Alw26I	GTCTC	2 cut(s)	83, 801
AoxI	GGCC	2 cut(s)	626, 938
ApeKI	GCWGC	5 cut(s)	129, 143, 566, 923, 989
ApoI	RAATTY	1 cut(s)	468
Asp700I	GAANNNNTTC	1 cut(s)	839
AspLEI	GCGC	2 cut(s)	143, 900
AspS9I	GGNCC	1 cut(s)	1057
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	6 cut(s)	54, 217, 283, 499, 667, 844
AvaII	GGWCC	1 cut(s)	1057
BalI	TGGCCA	2 cut(s)	628, 940
BarI	GAAGNNNNNNTAC	2 cut(s)	1059, 1091
BbsI	GAAGAC	2 cut(s)	206, 664
BbvI	GCAGC	5 cut(s)	116, 130, 578, 935, 976
BccI	CCATC	4 cut(s)	547, 608, 754, 971
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	83, 801
BcuI	ACTAGT	1 cut(s)	823
BfaI	CTAG	2 cut(s)	824, 1061
BisI	GCNGC	5 cut(s)	130, 144, 567, 924, 990
BlsI	GCNGC	5 cut(s)	131, 145, 568, 925, 991
Bme1390I	CCNGG	2 cut(s)	175, 482
Bme18I	GGWCC	1 cut(s)	1057
BmgT120I	GGNCC	1 cut(s)	1057
BmrFI	CCNGG	2 cut(s)	175, 482
BmsI	GCATC	4 cut(s)	553, 594, 869, 910
BpiI	GAAGAC	2 cut(s)	206, 664
BpuEI	CTTGAG	3 cut(s)	62, 246, 391
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse118I	RCCGGY	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	482
BseGI	GGATG	3 cut(s)	609, 619, 765
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	3 cut(s)	347, 510, 1093
BseXI	GCAGC	5 cut(s)	116, 130, 578, 935, 976
BseYI	CCCAGC	2 cut(s)	266, 926
BshFI	GGCC	2 cut(s)	628, 940
BsiSI	CCGG	3 cut(s)	120, 175, 285
BsiWI	CGTACG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	2 cut(s)	83, 801
BsmBI	CGTCTC	1 cut(s)	801
BsmFI	GGGAC	1 cut(s)	6
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	628, 940
Bsp143I	GATC	2 cut(s)	81, 275
BspANI	GGCC	2 cut(s)	628, 940
BspCNI	CTCAG	3 cut(s)	346, 509, 1092
BsrDI	GCAATG	1 cut(s)	948
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssMI	GATC	2 cut(s)	81, 275
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	4 cut(s)	325, 634, 936, 1016
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	9 cut(s)	13, 201, 333, 496, 648, 681, 690, 816, 1079
BstF5I	GGATG	3 cut(s)	609, 619, 765
BstHHI	GCGC	2 cut(s)	143, 900
BstKTI	GATC	2 cut(s)	84, 278
BstMAI	GTCTC	2 cut(s)	83, 801
BstMBI	GATC	2 cut(s)	81, 275
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 995
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	3 cut(s)	141, 589, 1029
BstSCI	CCNGG	2 cut(s)	173, 480
BstV1I	GCAGC	5 cut(s)	116, 130, 578, 935, 976
BstV2I	GAAGAC	2 cut(s)	206, 664
BsuRI	GGCC	2 cut(s)	628, 940
BtsCI	GGATG	3 cut(s)	609, 619, 765
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	1 cut(s)	1005
Cac8I	GCNNGC	1 cut(s)	571
CfoI	GCGC	2 cut(s)	143, 900
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	1057
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	4 cut(s)	171, 229, 256, 764
CviAII	CATG	6 cut(s)	138, 234, 586, 774, 802, 1026
CviQI	GTAC	4 cut(s)	171, 229, 256, 764
DdeI	CTNAG	9 cut(s)	13, 201, 333, 496, 648, 681, 690, 816, 1079
DpnI	GATC	2 cut(s)	83, 277
DpnII	GATC	2 cut(s)	81, 275
DraI	TTTAAA	1 cut(s)	442
EaeI	YGGCCR	2 cut(s)	626, 938
Eco47I	GGWCC	1 cut(s)	1057
Eco57I	CTGAAG	2 cut(s)	684, 1014
EcoO109I	RGGNCCY	1 cut(s)	1057
EcoRII	CCWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	862
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	6 cut(s)	141, 237, 589, 777, 805, 1029
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	6 cut(s)	137, 233, 585, 773, 801, 1025
FblI	GTMKAC	1 cut(s)	876
Fnu4HI	GCNGC	5 cut(s)	130, 144, 567, 924, 990
FokI	GGATG	3 cut(s)	616, 626, 772
Fsp4HI	GCNGC	5 cut(s)	130, 144, 567, 924, 990
FspBI	CTAG	2 cut(s)	824, 1061
FspI	TGCGCA	1 cut(s)	899
GlaI	GCGC	2 cut(s)	142, 899
GluI	GCNGC	5 cut(s)	130, 144, 567, 924, 990
GsaI	CCCAGC	2 cut(s)	270, 930
HaeIII	GGCC	2 cut(s)	628, 940
HapII	CCGG	3 cut(s)	120, 175, 285
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	143, 900
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	6 cut(s)	141, 237, 589, 777, 805, 1029
Hin6I	GCGC	2 cut(s)	141, 898
HinP1I	GCGC	2 cut(s)	141, 898
HincII	GTYRAC	1 cut(s)	1019
HindII	GTYRAC	1 cut(s)	1019
HinfI	GANTC	3 cut(s)	178, 781, 791
HpaII	CCGG	3 cut(s)	120, 175, 285
HphI	GGTGA	6 cut(s)	54, 217, 283, 499, 667, 844
Hpy166II	GTNNAC	5 cut(s)	231, 282, 835, 877, 1019
Hpy188I	TCNGA	8 cut(s)	86, 306, 499, 603, 660, 703, 780, 1082
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	5 cut(s)	231, 282, 835, 877, 1019
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4III	ACNGT	4 cut(s)	325, 634, 936, 1016
HpyCH4IV	ACGT	1 cut(s)	902
HpyCH4V	TGCA	5 cut(s)	146, 566, 860, 923, 1053
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 995
HpyF3I	CTNAG	9 cut(s)	13, 201, 333, 496, 648, 681, 690, 816, 1079
HpySE526I	ACGT	1 cut(s)	902
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	6 cut(s)	141, 237, 589, 777, 805, 1029
HspAI	GCGC	2 cut(s)	141, 898
Kzo9I	GATC	2 cut(s)	81, 275
LmnI	GCTCC	3 cut(s)	307, 892, 986
Lsp1109I	GCAGC	5 cut(s)	116, 130, 578, 935, 976
LweI	GCATC	4 cut(s)	553, 594, 869, 910
MaeI	CTAG	2 cut(s)	824, 1061
MaeII	ACGT	1 cut(s)	902
MaeIII	GTNAC	7 cut(s)	325, 401, 422, 505, 529, 1034, 1066
MalI	GATC	2 cut(s)	83, 277
MboI	GATC	2 cut(s)	81, 275
MboII	GAAGA	3 cut(s)	206, 289, 664
MlsI	TGGCCA	2 cut(s)	628, 940
MluCI	AATT	4 cut(s)	468, 594, 769, 880
MluNI	TGGCCA	2 cut(s)	628, 940
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	8 cut(s)	76, 86, 347, 505, 514, 654, 688, 688
Mox20I	TGGCCA	2 cut(s)	628, 940
Mph1103I	ATGCAT	1 cut(s)	862
MroXI	GAANNNNTTC	1 cut(s)	839
MscI	TGGCCA	2 cut(s)	628, 940
MseI	TTAA	5 cut(s)	125, 222, 441, 768, 905
MslI	CAYNNNNRTG	2 cut(s)	408, 1030
Msp20I	TGGCCA	2 cut(s)	628, 940
MspA1I	CMGCKG	2 cut(s)	569, 926
MspI	CCGG	3 cut(s)	120, 175, 285
MspR9I	CCNGG	2 cut(s)	175, 482
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	2 cut(s)	138, 995
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	2 cut(s)	81, 275
NlaIII	CATG	6 cut(s)	141, 237, 589, 777, 805, 1029
NmuCI	GTSAC	3 cut(s)	401, 505, 1034
NsbI	TGCGCA	1 cut(s)	899
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	3 cut(s)	141, 589, 1029
OliI	CACNNNNGTG	1 cut(s)	408
PciI	ACATGT	2 cut(s)	585, 1025
PctI	GAATGC	1 cut(s)	476
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	3 cut(s)	178, 781, 791
Pfl23II	CGTACG	1 cut(s)	255
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	5 cut(s)	131, 145, 568, 925, 991
PpuMI	RGGWCCY	1 cut(s)	1057
PscI	ACATGT	2 cut(s)	585, 1025
Psp5II	RGGWCCY	1 cut(s)	1057
Psp6I	CCWGG	1 cut(s)	480
PspFI	CCCAGC	2 cut(s)	266, 926
PspGI	CCWGG	1 cut(s)	480
PspLI	CGTACG	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	1057
PspPPI	RGGWCCY	1 cut(s)	1057
PvuII	CAGCTG	2 cut(s)	569, 926
RsaI	GTAC	4 cut(s)	172, 230, 257, 765
RsaNI	GTAC	4 cut(s)	171, 229, 256, 764
RseI	CAYNNNNRTG	2 cut(s)	408, 1030
SaqAI	TTAA	5 cut(s)	125, 222, 441, 768, 905
SatI	GCNGC	5 cut(s)	130, 144, 567, 924, 990
Sau3AI	GATC	2 cut(s)	81, 275
Sau96I	GGNCC	1 cut(s)	1057
ScrFI	CCNGG	2 cut(s)	175, 482
SfaNI	GCATC	4 cut(s)	553, 594, 869, 910
SinI	GGWCC	1 cut(s)	1057
SmiMI	CAYNNNNRTG	2 cut(s)	408, 1030
SmlI	CTYRAG	3 cut(s)	77, 261, 406
SmoI	CTYRAG	3 cut(s)	77, 261, 406
SpeI	ACTAGT	1 cut(s)	823
Sse9I	AATT	4 cut(s)	468, 594, 769, 880
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	2 cut(s)	824, 1061
StyD4I	CCNGG	2 cut(s)	173, 480
TaaI	ACNGT	4 cut(s)	325, 634, 936, 1016
TaiI	ACGT	1 cut(s)	905
TaqI	TCGA	1 cut(s)	352
TasI	AATT	4 cut(s)	468, 594, 769, 880
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	3 cut(s)	178, 781, 791
Tru1I	TTAA	5 cut(s)	125, 222, 441, 768, 905
Tru9I	TTAA	5 cut(s)	125, 222, 441, 768, 905
TscAI	CASTG	1 cut(s)	1005
TseFI	GTSAC	3 cut(s)	401, 505, 1034
TseI	GCWGC	5 cut(s)	129, 143, 566, 923, 989
Tsp45I	GTSAC	3 cut(s)	401, 505, 1034
TspDTI	ATGAA	5 cut(s)	31, 323, 762, 818, 937
TspGWI	ACGGA	2 cut(s)	88, 833
TspRI	CASTG	1 cut(s)	1005
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	1057
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	3 cut(s)	141, 589, 1029
XcmI	CCANNNNNNNNNTGG	1 cut(s)	974
XmiI	GTMKAC	1 cut(s)	876
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	2 cut(s)	824, 1061
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.