Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005850

Physical Location & Seq

Genomic Coordinates Forward (+)

17403980 .. 17408598

Gene Structure 4619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG186900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAATCAGAACGACACCGTTACATCTCAGCTCAAAAATGGAGTTCGAGGATTTATGTTGGATATGTATGACTTCAACAACGATATCTGGTTATGTCACTCAACTGGGGGCAAATGTTACAATTTCACAGCATTTAGACCTGCTCTTGACGTGCTGAAAGAAATTCGAGCATTTTTGGAAGCAAATCCCTCAGAAATTGTCACAATTTTTATTGAGGATTATGTAACATCTCCATCAGGCTTGTCAAAAGTCTTTGATTCAGCTGGTTTAAAGACCTATATGTTCCCCCTGGCTCGGATGCCAAAGGATGGAAATGATTGGCCAACTGTTGATGATATGGCTAAAAACAATCAGAGGTTGGTGGTCTTCACCTCTAAGTCATCGAAGGAGGCCTCAGAGGGAATTGCTTACGAGTGGAACTATGTCGTAGAAAATCAATATGGAAATGGCGGGATGGTACCTAATTCATGTCCGAATCGTGCTGAATCATCTCCCATGAACACAACATCAAAGTCACTAGTTCTGGTGAACTACTTCCGTGATATTCCCAATGCATCAGCAACTTGCGCAGACAATTCAGCTCCATTACTGAGCGAGATCAAAACTTGTTATGATGCAGCTGGGAAACGGTGGCCAAACTTTATTGCCGTTGATTATTACCAGAAAAGTGATGGCGGGGGAGCTGCTGAAGCAGTGGATCAATCAAATGGTCAACTGACATGTGGGTGTGACAGCATTACATATTGCAAGGTGAATGCTACAACTGGAAATGCTACATTTGGTTCATGTGATGTCCCAAAACTTGCTCCACCGCCACCTGCTTCCCTCGCCAGCACACCTCCTTCAGGTCCTAGTAGTAACTTTGCTCCTCGGAATAGCAAATCAATCCTGTTGAGGTGGTTGTGTGGAACAATTTTGGCTGCTACTCTCTCAATGCGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

314

Amino Acids

34.09

Weight (kDa)

5.34

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	1 - 250	3.8e-141	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	2 - 226	2.8e-25	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36945
fragaria_vesca	FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200 FvH4_1g16200
malus_domestica	MD02G1173900.v1.1
prunus_persica	Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1 Prupe.7G131800_v2.0.a1
pyrus_communis	pycom02g14020 pycom15g24810
rosa_chinensis	RchiOBHm_Chr2g0105901
rosa_laevigata	RLG00000017468
rosa_multiflora	Rmu_sc0004367.1_g000009
rosa_roxburghii	Rroxscaffold_2G00137590 Rroxscaffold_2G00137740
rosa_rugosa	Rorug02G0131700 Rorug02G0131800
rosa_samantha	Rh2AG182300 Rh2BG192300 Rh2CG186900 Rh2DG188800
rosa_wichuraiana	Rw2G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	826
Acc16I	TGCGCA	1 cut(s)	568
Acc36I	ACCTGC	2 cut(s)	148, 826
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	457
AccB7I	CCANNNNNTGG	1 cut(s)	308
AciI	CCGC	4 cut(s)	450, 675, 812, 937
AclWI	GGATC	1 cut(s)	705
AcoI	YGGCCR	2 cut(s)	320, 632
AcsI	RAATTY	1 cut(s)	162
AcuI	CTGAAG	2 cut(s)	708, 828
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	3 cut(s)	294, 308, 845
AflIII	ACRYGT	1 cut(s)	719
AgsI	TTSAA	1 cut(s)	76
AhlI	ACTAGT	1 cut(s)	517
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	5 cut(s)	31, 263, 581, 620, 683
AluI	AGCT	5 cut(s)	31, 263, 581, 620, 683
AlwI	GGATC	1 cut(s)	705
AoxI	GGCC	3 cut(s)	320, 390, 632
ApeKI	GCWGC	3 cut(s)	617, 683, 920
ApoI	RAATTY	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	533
Asp718I	GGTACC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	1 cut(s)	848
AsuHPI	GGTGA	3 cut(s)	361, 538, 763
AvaII	GGWCC	1 cut(s)	848
BalI	TGGCCA	2 cut(s)	322, 634
BanI	GGYRCC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	358
BbvI	GCAGC	3 cut(s)	629, 670, 907
BccI	CCATC	4 cut(s)	241, 302, 448, 665
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	1 cut(s)	290
BcuI	ACTAGT	1 cut(s)	517
BfaI	CTAG	2 cut(s)	518, 852
BfuAI	ACCTGC	2 cut(s)	148, 826
BisI	GCNGC	3 cut(s)	618, 684, 921
BlsI	GCNGC	3 cut(s)	619, 685, 922
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	848
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	848
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	3 cut(s)	288, 563, 604
BmuI	ACTGGG	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	288, 869
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 308, 845
Bse1I	ACTGG	2 cut(s)	109, 769
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	288, 869
BseGI	GGATG	3 cut(s)	303, 313, 459
BseLI	CCNNNNNNNGG	3 cut(s)	294, 308, 845
BseMII	CTCAG	4 cut(s)	41, 204, 408, 581
BseNI	ACTGG	2 cut(s)	109, 769
BseRI	GAGGAG	1 cut(s)	858
BseXI	GCAGC	3 cut(s)	629, 670, 907
BseYI	CCCAGC	1 cut(s)	620
BshFI	GGCC	3 cut(s)	322, 392, 634
BshNI	GGYRCC	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	3 cut(s)	294, 308, 845
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	3 cut(s)	322, 392, 634
Bsp143I	GATC	2 cut(s)	597, 697
BspACI	CCGC	4 cut(s)	450, 675, 812, 937
BspANI	GGCC	3 cut(s)	322, 392, 634
BspCNI	CTCAG	4 cut(s)	40, 203, 407, 582
BspLI	GGNNCC	1 cut(s)	459
BspMI	ACCTGC	2 cut(s)	148, 826
BspPI	GGATC	1 cut(s)	705
BspT107I	GGYRCC	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	109, 769
BssECI	CCNNGG	2 cut(s)	288, 869
BssMI	GATC	2 cut(s)	597, 697
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	3 cut(s)	19, 328, 630
BstC8I	GCNNGC	1 cut(s)	832
BstDEI	CTNAG	5 cut(s)	27, 190, 375, 394, 590
BstENI	CCTNNNNNAGG	1 cut(s)	843
BstF5I	GGATG	3 cut(s)	303, 313, 459
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	2 cut(s)	600, 700
BstMBI	GATC	2 cut(s)	597, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	566, 689, 827
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	723
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	629, 670, 907
BstV2I	GAAGAC	1 cut(s)	358
BsuRI	GGCC	3 cut(s)	322, 392, 634
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	303, 313, 459
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	1 cut(s)	699
BveI	ACCTGC	2 cut(s)	148, 826
Cac8I	GCNNGC	1 cut(s)	832
CfoI	GCGC	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	848
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	4 cut(s)	468, 496, 720, 786
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	5 cut(s)	27, 190, 375, 394, 590
DpnI	GATC	2 cut(s)	599, 699
DpnII	GATC	2 cut(s)	597, 697
DraI	TTTAAA	1 cut(s)	270
EaeI	YGGCCR	2 cut(s)	320, 632
Eco147I	AGGCCT	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	848
Eco57I	CTGAAG	2 cut(s)	708, 828
EcoNI	CCTNNNNNAGG	1 cut(s)	843
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRII	CCWGG	1 cut(s)	288
EcoRV	GATATC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	556
FaeI	CATG	4 cut(s)	471, 499, 723, 789
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	4 cut(s)	467, 495, 719, 785
FauI	CCCGC	2 cut(s)	443, 668
Fnu4HI	GCNGC	3 cut(s)	618, 684, 921
FokI	GGATG	3 cut(s)	310, 320, 466
Fsp4HI	GCNGC	3 cut(s)	618, 684, 921
FspBI	CTAG	2 cut(s)	518, 852
FspI	TGCGCA	1 cut(s)	568
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	3 cut(s)	618, 684, 921
GsaI	CCCAGC	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	322, 392, 634
HhaI	GCGC	1 cut(s)	569
Hin1II	CATG	4 cut(s)	471, 499, 723, 789
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HincII	GTYRAC	1 cut(s)	713
HindII	GTYRAC	1 cut(s)	713
HinfI	GANTC	4 cut(s)	4, 257, 475, 485
HphI	GGTGA	3 cut(s)	361, 538, 763
Hpy166II	GTNNAC	2 cut(s)	529, 713
Hpy188I	TCNGA	7 cut(s)	9, 193, 297, 354, 397, 474, 873
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	2 cut(s)	529, 713
HpyAV	CCTTC	2 cut(s)	379, 852
HpyCH4III	ACNGT	3 cut(s)	19, 328, 630
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	554, 617, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	566, 689, 827
HpyF3I	CTNAG	5 cut(s)	27, 190, 375, 394, 590
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	471, 499, 723, 789
HspAI	GCGC	1 cut(s)	567
KpnI	GGTACC	1 cut(s)	461
Kzo9I	GATC	2 cut(s)	597, 697
LmnI	GCTCC	4 cut(s)	586, 680, 811, 871
Lsp1109I	GCAGC	3 cut(s)	629, 670, 907
LweI	GCATC	3 cut(s)	288, 563, 604
MaeI	CTAG	2 cut(s)	518, 852
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	8 cut(s)	19, 95, 116, 199, 223, 513, 728, 857
MalI	GATC	2 cut(s)	599, 699
MboI	GATC	2 cut(s)	597, 697
MboII	GAAGA	1 cut(s)	358
MlsI	TGGCCA	2 cut(s)	322, 634
MluCI	AATT	8 cut(s)	121, 162, 195, 204, 402, 463, 574, 912
MluNI	TGGCCA	2 cut(s)	322, 634
MmeI	TCCRAC	1 cut(s)	39
Mox20I	TGGCCA	2 cut(s)	322, 634
Mph1103I	ATGCAT	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	533
MscI	TGGCCA	2 cut(s)	322, 634
MseI	TTAA	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	724
Msp20I	TGGCCA	2 cut(s)	322, 634
MspA1I	CMGCKG	2 cut(s)	263, 620
MspR9I	CCNGG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	566, 689, 827
NdeII	GATC	2 cut(s)	597, 697
NlaIII	CATG	4 cut(s)	471, 499, 723, 789
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	4 cut(s)	95, 199, 513, 728
NsbI	TGCGCA	1 cut(s)	568
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	1 cut(s)	723
PaqCI	CACCTGC	1 cut(s)	826
PceI	AGGCCT	1 cut(s)	392
PciI	ACATGT	1 cut(s)	719
PctI	GAATGC	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	4 cut(s)	4, 257, 475, 485
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	619, 685, 922
PpuMI	RGGWCCY	1 cut(s)	848
PscI	ACATGT	1 cut(s)	719
Psp5II	RGGWCCY	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	848
PspPPI	RGGWCCY	1 cut(s)	848
PvuII	CAGCTG	2 cut(s)	263, 620
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	724
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	3 cut(s)	618, 684, 921
Sau3AI	GATC	2 cut(s)	597, 697
Sau96I	GGNCC	1 cut(s)	848
ScrFI	CCNGG	1 cut(s)	290
SfaNI	GCATC	3 cut(s)	288, 563, 604
SinI	GGWCC	1 cut(s)	848
SmiMI	CAYNNNNRTG	1 cut(s)	724
SpeI	ACTAGT	1 cut(s)	517
Sse9I	AATT	8 cut(s)	121, 162, 195, 204, 402, 463, 574, 912
SseBI	AGGCCT	1 cut(s)	392
SsiI	CCGC	4 cut(s)	450, 675, 812, 937
SspMI	CTAG	2 cut(s)	518, 852
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	3 cut(s)	19, 328, 630
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	46, 166, 383
TasI	AATT	8 cut(s)	121, 162, 195, 204, 402, 463, 574, 912
TfiI	GAWTC	4 cut(s)	4, 257, 475, 485
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	1 cut(s)	699
TseFI	GTSAC	4 cut(s)	95, 199, 513, 728
TseI	GCWGC	3 cut(s)	617, 683, 920
Tsp45I	GTSAC	4 cut(s)	95, 199, 513, 728
TspDTI	ATGAA	4 cut(s)	17, 456, 512, 774
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	699
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	848
XagI	CCTNNNNNAGG	1 cut(s)	843
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	723
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	2 cut(s)	518, 852
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.