AT4G37130

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17489355 .. 17492012
2658 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37130.1

Sequence Viewer

Length: 1542 bp
ATGTCGTTTTTTCCCCCACAGCAACAACAGACGCCTCAGCCGCTGTTTCAAACTCAGCAAACGTCGTTGTTTCAGCCGCAGCAAACCAATTCCATCTTCTCGCAATCGCAGCCGCAGCAAACCAATTCCATCTTCTCGCAATCGCAACCACAGCAAACCAATTCCATCTTCTCGCAACCGCAGCAACAACAGCAAACGTCGTTGTTTCAGCCGCAACAGTTCCAGCAGCAGCAGCAACAGCTAAATCAGCAACAGCAGCAGCAAGTACAACAACAGTTGTATTTGTTCACCAACGATAAAGCTCCGGCGAATTACAGTACTAAGTGGGCCGATCTTCATCCCGATTCTCAGAAACTCTTGCTTCAGATTGAAGAGAAGATATTGGAGCATAGAAGTGAAAGTCAGAGATTAGATCAGTGTAGTCGACTTTATGATTCTTCTGTATCCAGTGAAGGGTTTGAGTTTGATGCTAGCCGCATTGTTCAGGAGCTTGGTGGAATTAATACTGCCATGGACCGACAAAAAGCTGTTTTGCATGAGCTTATGATTGTTGCCAAAGATATGCTGCGTAATGCGGAGATTGCAGTTCGGTCTTTTATGATGCTACAGCCAAGATTTCCTCATTGGAAACAAGGAGGAGGAGTTGTTAGTGTTGGTTCTCAACCATCTCAGGGGCAAGGAACTAATCCAGCTCCAGCTTCTTCTGGTCAACAACAAGCTGTTACTACAACAGTTCAAGTTTCTGATTTTTACCGTGGGATTCCGAAGAAACCAACAGCTTTTCTACTGCAGACAGTTGTAAGGTTTGAGAAGTATCTTAACGAGTGTCGTCAATGGGTTGAAGAGCTGGAGCAATTGCTCGCCTTGGATTCTGACAAGTATAGTCGACATGCTTCTCTTTTAGAATCTCTTCCGAAAGTCATGTCTAATGTTCATGACTTCTTTGTTCATGTGGCTGCTAAGGTAGAGAGTATTCACCAATATATTGAATCAATGAGAACATCGTATCTTGCTGACCAGCGCCGAAGAGGAGAATGCCATGATCCGTTTCTTGAGGCTGATCGAAGGGAGACAGCAAAGCAGGAAGCAGCTGCTAAAAGGGTCCACCCAACTCTGCATCTTCCTGCTTCTACTACAAGTACACAACCCTCAACACAGGTTGCTGGGTTGATTGCCAGCTCAGCTACTCCTGGGGGTTCAAATCCTCCACAGACATCTGTTCCAACATCAAACCCTTCTTCAGGAGCTGGTTTTTCGTTTCTCAACACACCTGCTTCTGGACCTTCGTCTTCTCTCTTTGCTACACCATCTTCTACTGCTCCTACCTCGTCTTTGTTTGGACCATCCCCGACTCCCACACAGACGCCACTTTTTGGGTCTTCCCCGGCTTCTACATTTGGTTCTACTCAATCTTTGTTTGGCCAGACAACTCCATCACTTACTATGCCTTCACAGTTTGGAGGTGCTACACCAGGATCAGGAGCCAGCTTTGGTTCTATGACAAAATCTTCAAGGCCAAAATCTCGAACTACACGCCGTTAG

Protein Analysis

513

Amino Acids

56.54

Weight (kDa)

8.87

Isoelectric Point (pI)

67.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013560)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1279
Acc36I ACCTGC 1 cut(s) 1279
AccB7I CCANNNNNTGG 1 cut(s) 1373
AccI GTMKAC 2 cut(s) 424, 886
AciI CCGC 7 cut(s) 41, 77, 113, 179, 212, 475, 575
AclWI GGATC 2 cut(s) 1037, 1483
AcoI YGGCCR 1 cut(s) 1420
AcuI CTGAAG 2 cut(s) 347, 1224
AcyI GRCGYC 2 cut(s) 32, 1364
AfaI GTAC 3 cut(s) 267, 319, 1141
AfiI CCNNNNNNNGG 6 cut(s) 453, 671, 1241, 1277, 1373, 1478
AgsI TTSAA 7 cut(s) 50, 371, 737, 842, 989, 1200, 1512
AjnI CCWGG 2 cut(s) 1189, 1471
AjuI GAANNNNNNNTTGG 6 cut(s) 80, 112, 116, 148, 152, 184
Alw26I GTCTC 1 cut(s) 1064
AlwI GGATC 2 cut(s) 1037, 1483
AlwNI CAGNNNCTG 2 cut(s) 43, 1247
AoxI GGCC 3 cut(s) 327, 1420, 1514
ArsI GACNNNNNNTTYG 2 cut(s) 908, 940
AseI ATTAAT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 909
AspLEI GCGC 1 cut(s) 1023
AspS9I GGNCC 5 cut(s) 327, 514, 1102, 1280, 1340
AsuC2I CCSGG 1 cut(s) 1385
AsuHPI GGTGA 2 cut(s) 280, 968
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 4 cut(s) 514, 1102, 1280, 1340
BalI TGGCCA 1 cut(s) 1422
BbsI GAAGAC 2 cut(s) 1281, 1371
BbvCI CCTCAGC 1 cut(s) 36
BccI CCATC 7 cut(s) 101, 137, 173, 673, 1315, 1351, 1441
BceAI ACGGC 1 cut(s) 1521
BciT130I CCWGG 2 cut(s) 1191, 1473
BciVI GTATCC 1 cut(s) 454
BcnI CCSGG 1 cut(s) 1385
BcoDI GTCTC 1 cut(s) 1064
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 2 cut(s) 605, 788
BfoI RGCGCY 1 cut(s) 1024
BfuAI ACCTGC 1 cut(s) 1279
BfuI GTATCC 1 cut(s) 454
BlpI GCTNAGC 1 cut(s) 1180
BmcAI AGTACT 1 cut(s) 319
Bme1390I CCNGG 3 cut(s) 1191, 1385, 1473
Bme18I GGWCC 4 cut(s) 514, 1102, 1280, 1340
BmgT120I GGNCC 5 cut(s) 327, 514, 1102, 1280, 1340
BmiI GGNNCC 2 cut(s) 1103, 1483
BmrFI CCNGG 3 cut(s) 1191, 1385, 1473
BmsI GCATC 3 cut(s) 457, 591, 1126
BmtI GCTAGC 1 cut(s) 474
BoxI GACNNNNGTC 1 cut(s) 1285
BpiI GAAGAC 2 cut(s) 1281, 1371
BpmI CTGGAG 2 cut(s) 678, 869
Bpu10I CCTNAGC 2 cut(s) 36, 960
Bpu1102I GCTNAGC 1 cut(s) 1180
BpuEI CTTGAG 1 cut(s) 1073
BpuMI CCSGG 1 cut(s) 1385
BsaBI GATNNNNATC 1 cut(s) 336
BsaHI GRCGYC 2 cut(s) 32, 1364
BsaJI CCNNGG 5 cut(s) 510, 754, 864, 1190, 1383
BsaXI ACNNNNNCTCC 4 cut(s) 627, 630, 657, 660
Bsc4I CCNNNNNNNGG 6 cut(s) 453, 671, 1241, 1277, 1373, 1478
Bse1I ACTGG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 2 cut(s) 1191, 1473
BseDI CCNNGG 5 cut(s) 510, 754, 864, 1190, 1383
BseGI GGATG 2 cut(s) 337, 1343
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 6 cut(s) 453, 671, 1241, 1277, 1373, 1478
BseMII CTCAG 5 cut(s) 50, 68, 362, 683, 1194
BseNI ACTGG 1 cut(s) 447
BseRI GAGGAG 3 cut(s) 651, 654, 1044
BseYI CCCAGC 1 cut(s) 1163
BshFI GGCC 3 cut(s) 329, 1422, 1516
BsiSI CCGG 2 cut(s) 305, 1385
BslI CCNNNNNNNGG 6 cut(s) 453, 671, 1241, 1277, 1373, 1478
BsmAI GTCTC 1 cut(s) 1064
BsmI GAATGC 1 cut(s) 1040
BsnI GGCC 3 cut(s) 329, 1422, 1516
Bsp143I GATC 5 cut(s) 331, 412, 1042, 1060, 1475
Bsp1720I GCTNAGC 1 cut(s) 1180
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 7 cut(s) 41, 77, 113, 179, 212, 475, 575
BspANI GGCC 3 cut(s) 329, 1422, 1516
BspCNI CTCAG 5 cut(s) 49, 67, 361, 682, 1193
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 2 cut(s) 1103, 1483
BspMAI CTGCAG 1 cut(s) 792
BspMI ACCTGC 1 cut(s) 1279
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 2 cut(s) 1037, 1483
BspQI GCTCTTC 1 cut(s) 837
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 5 cut(s) 510, 754, 864, 1190, 1383
BssMI GATC 5 cut(s) 331, 412, 1042, 1060, 1475
BssNI GRCGYC 2 cut(s) 32, 1364
BssT1I CCWWGG 2 cut(s) 510, 864
Bst2UI CCWGG 2 cut(s) 1191, 1473
Bst4CI ACNGT 7 cut(s) 219, 276, 317, 733, 755, 796, 1455
Bst6I CTCTTC 4 cut(s) 366, 837, 915, 1021
BstACI GRCGYC 2 cut(s) 32, 1364
BstC8I GCNNGC 4 cut(s) 472, 861, 1177, 1486
BstDEI CTNAG 7 cut(s) 36, 54, 321, 348, 669, 960, 1180
BstDSI CCRYGG 2 cut(s) 510, 754
BstENI CCTNNNNNAGG 1 cut(s) 1239
BstF5I GGATG 2 cut(s) 337, 1343
BstH2I RGCGCY 1 cut(s) 1024
BstHHI GCGC 1 cut(s) 1023
BstKTI GATC 5 cut(s) 334, 415, 1045, 1063, 1478
BstMAI GTCTC 1 cut(s) 1064
BstMBI GATC 5 cut(s) 331, 412, 1042, 1060, 1475
BstNI CCWGG 2 cut(s) 1191, 1473
BstNSI RCATGY 1 cut(s) 893
BstPAI GACNNNNGTC 1 cut(s) 1285
BstSCI CCNGG 3 cut(s) 1189, 1383, 1471
BstSFI CTRYAG 2 cut(s) 605, 788
BstV2I GAAGAC 2 cut(s) 1281, 1371
BsuI GTATCC 1 cut(s) 454
BsuRI GGCC 3 cut(s) 329, 1422, 1516
BtgI CCRYGG 2 cut(s) 510, 754
BtsCI GGATG 2 cut(s) 337, 1343
BtsIMutI CAGTG 2 cut(s) 422, 454
BveI ACCTGC 1 cut(s) 1279
Cac8I GCNNGC 4 cut(s) 472, 861, 1177, 1486
CaiI CAGNNNCTG 2 cut(s) 43, 1247
CciI TCATGA 1 cut(s) 934
CfoI GCGC 1 cut(s) 1023
Cfr13I GGNCC 5 cut(s) 327, 514, 1102, 1280, 1340
CseI GACGC 2 cut(s) 40, 1372
Csp6I GTAC 3 cut(s) 266, 318, 1140
CviAII CATG 7 cut(s) 511, 536, 890, 922, 935, 950, 1040
CviQI GTAC 3 cut(s) 266, 318, 1140
DdeI CTNAG 7 cut(s) 36, 54, 321, 348, 669, 960, 1180
DpnI GATC 5 cut(s) 333, 414, 1044, 1062, 1477
DpnII GATC 5 cut(s) 331, 412, 1042, 1060, 1475
EaeI YGGCCR 1 cut(s) 1420
Eam1104I CTCTTC 4 cut(s) 366, 837, 915, 1021
EarI CTCTTC 4 cut(s) 366, 837, 915, 1021
Eco130I CCWWGG 2 cut(s) 510, 864
Eco47I GGWCC 4 cut(s) 514, 1102, 1280, 1340
Eco57I CTGAAG 2 cut(s) 347, 1224
EcoNI CCTNNNNNAGG 1 cut(s) 1239
EcoRII CCWGG 2 cut(s) 1189, 1471
EcoT14I CCWWGG 2 cut(s) 510, 864
ErhI CCWWGG 2 cut(s) 510, 864
FaeI CATG 7 cut(s) 514, 539, 893, 925, 938, 953, 1043
FatI CATG 7 cut(s) 510, 535, 889, 921, 934, 949, 1039
FblI GTMKAC 2 cut(s) 424, 886
FokI GGATG 2 cut(s) 324, 1330
FspBI CTAG 1 cut(s) 471
GlaI GCGC 1 cut(s) 1022
GsaI CCCAGC 1 cut(s) 1167
GsuI CTGGAG 2 cut(s) 678, 869
HaeII RGCGCY 1 cut(s) 1024
HaeIII GGCC 3 cut(s) 329, 1422, 1516
HapII CCGG 2 cut(s) 305, 1385
HgaI GACGC 2 cut(s) 40, 1372
HhaI GCGC 1 cut(s) 1023
Hin1I GRCGYC 2 cut(s) 32, 1364
Hin1II CATG 7 cut(s) 514, 539, 893, 925, 938, 953, 1043
Hin6I GCGC 1 cut(s) 1021
HinP1I GCGC 1 cut(s) 1021
HincII GTYRAC 3 cut(s) 425, 710, 887
HindII GTYRAC 3 cut(s) 425, 710, 887
HinfI GANTC 7 cut(s) 344, 434, 760, 869, 905, 989, 1351
HpaII CCGG 2 cut(s) 305, 1385
HphI GGTGA 2 cut(s) 280, 968
Hpy166II GTNNAC 6 cut(s) 288, 425, 710, 887, 1105, 1142
Hpy188I TCNGA 7 cut(s) 351, 366, 405, 745, 765, 874, 915
Hpy188III TCNNGA 8 cut(s) 341, 485, 935, 1052, 1242, 1278, 1479, 1524
Hpy8I GTNNAC 6 cut(s) 288, 425, 710, 887, 1105, 1142
Hpy99I CGWCG 2 cut(s) 67, 202
HpyAV CCTTC 5 cut(s) 446, 1059, 1245, 1293, 1458
HpyCH4III ACNGT 7 cut(s) 219, 276, 317, 733, 755, 796, 1455
HpyCH4IV ACGT 2 cut(s) 62, 197
HpyCH4V TGCA 4 cut(s) 535, 584, 790, 1117
HpyF3I CTNAG 7 cut(s) 36, 54, 321, 348, 669, 960, 1180
HpySE526I ACGT 2 cut(s) 62, 197
Hsp92I GRCGYC 2 cut(s) 32, 1364
Hsp92II CATG 7 cut(s) 514, 539, 893, 925, 938, 953, 1043
HspAI GCGC 1 cut(s) 1021
Kzo9I GATC 5 cut(s) 331, 412, 1042, 1060, 1475
LguI GCTCTTC 1 cut(s) 837
LmnI GCTCC 8 cut(s) 307, 385, 487, 697, 850, 1244, 1324, 1481
LweI GCATC 3 cut(s) 457, 591, 1126
MaeI CTAG 1 cut(s) 471
MaeII ACGT 2 cut(s) 62, 197
MaeIII GTNAC 1 cut(s) 721
MalI GATC 5 cut(s) 333, 414, 1044, 1062, 1477
MboI GATC 5 cut(s) 331, 412, 1042, 1060, 1475
MfeI CAATTG 1 cut(s) 854
MlsI TGGCCA 1 cut(s) 1422
MluCI AATT 6 cut(s) 88, 124, 160, 310, 498, 854
MluNI TGGCCA 1 cut(s) 1422
MlyI GAGTC 1 cut(s) 1345
MmeI TCCRAC 1 cut(s) 1247
Mox20I TGGCCA 1 cut(s) 1422
MroXI GAANNNNTTC 1 cut(s) 909
MscI TGGCCA 1 cut(s) 1422
MseI TTAA 2 cut(s) 501, 819
MslI CAYNNNNRTG 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 1422
MspA1I CMGCKG 2 cut(s) 43, 1091
MspI CCGG 2 cut(s) 305, 1385
MspR9I CCNGG 3 cut(s) 1191, 1385, 1473
MunI CAATTG 1 cut(s) 854
Mva1269I GAATGC 1 cut(s) 1040
MvaI CCWGG 2 cut(s) 1191, 1473
NciI CCSGG 1 cut(s) 1385
NcoI CCATGG 1 cut(s) 510
NdeII GATC 5 cut(s) 331, 412, 1042, 1060, 1475
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 7 cut(s) 514, 539, 893, 925, 938, 953, 1043
NlaIV GGNNCC 2 cut(s) 1103, 1483
NspI RCATGY 1 cut(s) 893
PagI TCATGA 1 cut(s) 934
PaqCI CACCTGC 1 cut(s) 1279
PciSI GCTCTTC 1 cut(s) 837
PctI GAATGC 1 cut(s) 1040
PdmI GAANNNNTTC 1 cut(s) 909
PfeI GAWTC 6 cut(s) 344, 434, 760, 869, 905, 989
PflMI CCANNNNNTGG 1 cut(s) 1373
PleI GAGTC 1 cut(s) 1345
PpsI GAGTC 1 cut(s) 1345
PshAI GACNNNNGTC 1 cut(s) 1285
PshBI ATTAAT 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 1189, 1471
PspFI CCCAGC 1 cut(s) 1163
PspGI CCWGG 2 cut(s) 1189, 1471
PspN4I GGNNCC 2 cut(s) 1103, 1483
PspPI GGNCC 5 cut(s) 327, 514, 1102, 1280, 1340
PstI CTGCAG 1 cut(s) 792
PstNI CAGNNNCTG 2 cut(s) 43, 1247
PvuII CAGCTG 1 cut(s) 1091
RsaI GTAC 3 cut(s) 267, 319, 1141
RsaNI GTAC 3 cut(s) 266, 318, 1140
RseI CAYNNNNRTG 1 cut(s) 393
SalI GTCGAC 2 cut(s) 423, 885
SapI GCTCTTC 1 cut(s) 837
SaqAI TTAA 2 cut(s) 501, 819
Sau3AI GATC 5 cut(s) 331, 412, 1042, 1060, 1475
Sau96I GGNCC 5 cut(s) 327, 514, 1102, 1280, 1340
ScaI AGTACT 1 cut(s) 319
SchI GAGTC 1 cut(s) 1345
ScrFI CCNGG 3 cut(s) 1191, 1385, 1473
SfaNI GCATC 3 cut(s) 457, 591, 1126
SfcI CTRYAG 2 cut(s) 605, 788
SinI GGWCC 4 cut(s) 514, 1102, 1280, 1340
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
Sse9I AATT 6 cut(s) 88, 124, 160, 310, 498, 854
SsiI CCGC 7 cut(s) 41, 77, 113, 179, 212, 475, 575
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 3 cut(s) 1189, 1383, 1471
StyI CCWWGG 2 cut(s) 510, 864
TaaI ACNGT 7 cut(s) 219, 276, 317, 733, 755, 796, 1455
TaiI ACGT 2 cut(s) 65, 200
TaqI TCGA 4 cut(s) 424, 886, 1063, 1525
TaqII GACCGA 2 cut(s) 531, 579
TasI AATT 6 cut(s) 88, 124, 160, 310, 498, 854
TatI WGTACW 3 cut(s) 265, 317, 1139
TauI GCSGC 5 cut(s) 43, 79, 115, 214, 477
TfiI GAWTC 6 cut(s) 344, 434, 760, 869, 905, 989
Tru1I TTAA 2 cut(s) 501, 819
Tru9I TTAA 2 cut(s) 501, 819
TscAI CASTG 2 cut(s) 422, 454
TspDTI ATGAA 3 cut(s) 326, 923, 938
TspGWI ACGGA 1 cut(s) 1035
TspRI CASTG 2 cut(s) 422, 454
Van91I CCANNNNNTGG 1 cut(s) 1373
VpaK11BI GGWCC 4 cut(s) 514, 1102, 1280, 1340
VspI ATTAAT 1 cut(s) 501
XagI CCTNNNNNAGG 1 cut(s) 1239
XceI RCATGY 1 cut(s) 893
XmiI GTMKAC 2 cut(s) 424, 886
XmnI GAANNNNTTC 1 cut(s) 909
XspI CTAG 1 cut(s) 471
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.