FvH4_1g14810

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013560
Physical Location & Seq
Forward (+)
8274557 .. 8279193
4637 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14810.t1

Sequence Viewer

Length: 1602 bp
ATGTCGTTTCCGTTATTCTCGTCGGCGCAACCGCAGCAAACGCCTCAGCAGCCGCAATCCTCCTCCCTGTTCGGAATCCCGAACCCCTTCCAGCAGCAATCCCCAAGCCCCTTCCAATCTTCGCCGAGCCTCTTCCAGCAATCTCAGCCGTCGCCGAGCCCCTTCCAGCAAAGCTCCTCCTTATTCTCTCAGCCCCAGCAGCAGCAACAGCAACAGCAGTCGCTGTTTCAGCCGCAGCAGCAGCAGTTTCAGCCTCAGTCGTCGCCGCTTCAGTTTCAGCCTCAGCCTCAGCCTCAGCCTCAGCAGCAGCAGCAGCAGCAGCAACAGCCGCAGCAGCAGTTGTTTTTGTTTACTAATGACAAGGCTCCGGCGAGCTACGGCACCAAGTGGAGCGATTTGCACCCCGATTCGCAGAAGATTCTGTTCCAGATTGAGGAGCACATACTGGGGTACAGGGACGAGAGCCAGAGGCTGGATCAGTGTAGTCGGCTGTATGATTCGTCAGTTTCCAATGACGGGTTTGAGCAGGATGCAAGTCGTATCGTTCAGGAGCTTGGGGGAATAGGTACTGCCATGGACCGTCAGAAAGCTCTGCTGCAGGAGCTGATGGCTACTGTAAAAGAGATGTTAAGGAACAGTGAGATTGCTGTTCGCTCTTTCATGATGCTACGTCCAAGATTTCTTCGTCCAAATGCAGGAGGTACTTCAAATGGCACTGCACCTTCACAGACTCCTGGAGCAACAGTAACACCTGGCTCAACTAGTCAACCAACTACTAGTTCTATAGTTCCAGTTTTTGACTTCTATAATGGAGTTCCAAGGAAACCATCCCCCTTCTTACAGCACACGATTGCAAGATTTGAGAAGTATCTCGGTGAGTGCCGCCAATGGATTGAAGAAATCGAGCAGCTCCTTTTAAATTCAGAGAGGAACTATACCAATGATGGCTCCTCTTTGTTGCAATCTCTTCCAAAAGTCATGTCAAATGTGCACGACTTTTTTGTTCACGTGGCTGCTAAGGTGGAGAGTATTCATCAGTACATTGTATCAATGAAAGCAGCTTATCTTGCTAACCAGCGTCGCTTAGGGGATTCCAATGACCCATTTCTTGAGGCTGATAGGAGGGAAACAGCAAGGCAAGAAGCTGCTGCTAAGAGAGTGCATCCAACTTTGCATTTACCTGCAATTTCACAACCATCAACACAAGTGGCTGGATTGTTGACTAGCTCAGGAACTCAAGCGGCATCAACAGCATCAACGGCTCCACAGACATCTGCAGCTACTGCAGCAGCTTCATCTGGGAGTGCATTTTCACTTTTCAGTACACCTTCCGCCCCATCTTCTTCTTCCATGACTTCATCTTTGTTTGCAACACCAACCACTCCTGCTCCAGTATCTTCTCTTTTTGGACCATCATCTGCTACGCCGCAGACGACTGCTTCTCTGCTAGGAAATACTGCTCCTGCCTTGGGTTCTACTACTCCTGTGGGAGGTTCATTATTTTCTACTCCATTTGCTTCTGGTCCTGCAACATCATTTGGGTCTAGCTTTGGGGCTACAACGAAATCAACAAAGCCGAAAACTCGGTCTGGCCGACGTTAG

Protein Analysis

534

Amino Acids

57.8

Weight (kDa)

9.0

Isoelectric Point (pI)

82.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin_FG2 PF15967 276 - 385 8.7e-07 Nucleoporin FG repeated region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37130
fragaria_vesca FvH4_1g14810
malus_domestica MD02G1161300.v1.1 MD15G1275400.v1.1
prunus_persica Prupe.7G142300_v2.0.a1
pyrus_communis pycom02g12740 pycom15g23840
rosa_chinensis RchiOBHm_Chr2g0103771
rosa_laevigata RLG00000017258
rosa_multiflora Rmu_co8256557.1_g000001
rosa_roxburghii Rroxscaffold_2G00139410
rosa_rugosa Rorug02G0117200
rosa_samantha Rh2AG166200 Rh2BG173400 Rh2CG172100 Rh2DG171600
rosa_wichuraiana Rw0G006920 Rw2G013020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1189
AccB1I GGYRCC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 472
AciI CCGC 9 cut(s) 32, 53, 233, 266, 329, 883, 1241, 1332, 1427
AclWI GGATC 1 cut(s) 483
AcoI YGGCCR 1 cut(s) 1591
AcsI RAATTY 1 cut(s) 919
AcuI CTGAAG 1 cut(s) 254
AcvI CACGTG 1 cut(s) 1009
AdeI CACNNNGTG 1 cut(s) 387
AfaI GTAC 5 cut(s) 452, 568, 703, 1040, 1324
AfiI CCNNNNNNNGG 6 cut(s) 433, 472, 516, 695, 1469, 1490
AgsI TTSAA 2 cut(s) 708, 896
AhlI ACTAGT 2 cut(s) 761, 776
AjnI CCWGG 2 cut(s) 733, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 763, 795
Alw21I GWGCWC 2 cut(s) 441, 993
Alw44I GTGCAC 1 cut(s) 989
AlwI GGATC 1 cut(s) 483
AlwNI CAGNNNCTG 4 cut(s) 223, 472, 604, 1283
AoxI GGCC 1 cut(s) 1591
ApaLI GTGCAC 1 cut(s) 989
ApoI RAATTY 1 cut(s) 919
ArsI GACNNNNNNTTYG 5 cut(s) 965, 997, 1345, 1377, 1571
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 3 cut(s) 577, 1409, 1523
AsuHPI GGTGA 1 cut(s) 887
AvaII GGWCC 3 cut(s) 577, 1409, 1523
BaeGI GKGCMC 1 cut(s) 993
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 161
BbrPI CACGTG 1 cut(s) 1009
Bbv12I GWGCWC 2 cut(s) 441, 993
BbvCI CCTCAGC 5 cut(s) 45, 282, 288, 294, 300
BccI CCATC 6 cut(s) 601, 835, 938, 1204, 1345, 1420
BceAI ACGGC 3 cut(s) 133, 394, 1275
BciT130I CCWGG 2 cut(s) 735, 753
BcuI ACTAGT 2 cut(s) 761, 776
BfaI CTAG 5 cut(s) 762, 777, 1224, 1448, 1545
BfmI CTRYAG 4 cut(s) 596, 783, 1275, 1284
BfuAI ACCTGC 1 cut(s) 1189
Bme1390I CCNGG 2 cut(s) 735, 753
Bme18I GGWCC 3 cut(s) 577, 1409, 1523
BmgT120I GGNCC 3 cut(s) 577, 1409, 1523
BmiI GGNNCC 4 cut(s) 366, 382, 949, 1263
BmrFI CCNGG 2 cut(s) 735, 753
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 5 cut(s) 520, 654, 1171, 1253, 1262
BmuI ACTGGG 1 cut(s) 455
BpmI CTGGAG 2 cut(s) 756, 1374
Bpu10I CCTNAGC 8 cut(s) 45, 282, 288, 294, 300, 1017, 1084, 1228
BpuEI CTTGAG 2 cut(s) 1130, 1221
BsaAI YACGTR 1 cut(s) 1009
BsaJI CCNNGG 3 cut(s) 573, 818, 1467
BsaXI ACNNNNNCTCC 4 cut(s) 729, 759, 1372, 1402
Bsc4I CCNNNNNNNGG 6 cut(s) 433, 472, 516, 695, 1469, 1490
Bse1I ACTGG 3 cut(s) 450, 791, 1391
BseBI CCWGG 2 cut(s) 735, 753
BseDI CCNNGG 3 cut(s) 573, 818, 1467
BseGI GGATG 3 cut(s) 535, 827, 1162
BseLI CCNNNNNNNGG 6 cut(s) 433, 472, 516, 695, 1469, 1490
BseMII CTCAG 9 cut(s) 59, 158, 203, 269, 296, 302, 308, 314, 1242
BseNI ACTGG 3 cut(s) 450, 791, 1391
BseRI GAGGAG 4 cut(s) 52, 166, 449, 940
BseSI GKGCMC 1 cut(s) 993
BseYI CCCAGC 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 702
BshFI GGCC 1 cut(s) 1593
BshNI GGYRCC 1 cut(s) 380
BsiHKAI GWGCWC 2 cut(s) 441, 993
BsiSI CCGG 1 cut(s) 368
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 6 cut(s) 433, 472, 516, 695, 1469, 1490
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 1 cut(s) 1593
Bsp1286I GDGCHC 3 cut(s) 161, 441, 993
Bsp143I GATC 1 cut(s) 475
Bsp19I CCATGG 1 cut(s) 573
BspACI CCGC 9 cut(s) 32, 53, 233, 266, 329, 883, 1241, 1332, 1427
BspANI GGCC 1 cut(s) 1593
BspCNI CTCAG 9 cut(s) 58, 157, 202, 268, 295, 301, 307, 313, 1241
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 4 cut(s) 366, 382, 949, 1263
BspMAI CTGCAG 3 cut(s) 600, 1279, 1288
BspMI ACCTGC 1 cut(s) 1189
BspPI GGATC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 380
BsrI ACTGG 3 cut(s) 450, 791, 1391
BssECI CCNNGG 3 cut(s) 573, 818, 1467
BssMI GATC 1 cut(s) 475
BssT1I CCWWGG 3 cut(s) 573, 818, 1467
Bst2UI CCWGG 2 cut(s) 735, 753
Bst4CI ACNGT 4 cut(s) 581, 616, 638, 745
Bst6I CTCTTC 2 cut(s) 137, 972
BstAPI GCANNNNNTGC 1 cut(s) 1283
BstBAI YACGTR 1 cut(s) 1009
BstC8I GCNNGC 1 cut(s) 373
BstDSI CCRYGG 1 cut(s) 573
BstENI CCTNNNNNAGG 1 cut(s) 1488
BstF5I GGATG 3 cut(s) 535, 827, 1162
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 478
BstMBI GATC 1 cut(s) 475
BstNI CCWGG 2 cut(s) 735, 753
BstSCI CCNGG 2 cut(s) 733, 751
BstSFI CTRYAG 4 cut(s) 596, 783, 1275, 1284
BstSLI GKGCMC 1 cut(s) 993
BsuRI GGCC 1 cut(s) 1593
BtgI CCRYGG 1 cut(s) 573
BtsCI GGATG 3 cut(s) 535, 827, 1162
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 3 cut(s) 485, 643, 714
BveI ACCTGC 1 cut(s) 1189
Cac8I GCNNGC 1 cut(s) 373
CaiI CAGNNNCTG 4 cut(s) 223, 472, 604, 1283
CciI TCATGA 1 cut(s) 660
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 3 cut(s) 577, 1409, 1523
CseI GACGC 1 cut(s) 1067
Csp6I GTAC 5 cut(s) 451, 567, 702, 1039, 1323
CspCI CAANNNNNGTGG 2 cut(s) 1188, 1223
CviAII CATG 4 cut(s) 574, 661, 979, 1351
CviQI GTAC 5 cut(s) 451, 567, 702, 1039, 1323
DpnI GATC 1 cut(s) 477
DpnII GATC 1 cut(s) 475
DraI TTTAAA 1 cut(s) 918
DraIII CACNNNGTG 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 1591
Eam1104I CTCTTC 2 cut(s) 137, 972
EarI CTCTTC 2 cut(s) 137, 972
EciI GGCGGA 1 cut(s) 1321
Eco130I CCWWGG 3 cut(s) 573, 818, 1467
Eco24I GRGCYC 1 cut(s) 161
Eco47I GGWCC 3 cut(s) 577, 1409, 1523
Eco57I CTGAAG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 1009
EcoNI CCTNNNNNAGG 1 cut(s) 1488
EcoRII CCWGG 2 cut(s) 733, 751
EcoT14I CCWWGG 3 cut(s) 573, 818, 1467
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 3 cut(s) 573, 818, 1467
FaeI CATG 4 cut(s) 577, 664, 982, 1354
FaiI YATR 9 cut(s) 443, 495, 575, 662, 785, 807, 936, 980, 1352
FaqI GGGAC 1 cut(s) 470
FatI CATG 4 cut(s) 573, 660, 978, 1350
FokI GGATG 3 cut(s) 542, 814, 1149
FriOI GRGCYC 1 cut(s) 161
FspBI CTAG 5 cut(s) 762, 777, 1224, 1448, 1545
GlaI GCGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 199
GsuI CTGGAG 2 cut(s) 756, 1374
HaeIII GGCC 1 cut(s) 1593
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 1067
HhaI GCGC 1 cut(s) 28
Hin1II CATG 4 cut(s) 577, 664, 982, 1354
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 2 cut(s) 767, 1221
HindII GTYRAC 2 cut(s) 767, 1221
HinfI GANTC 6 cut(s) 75, 407, 418, 497, 730, 1091
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 6 cut(s) 351, 767, 991, 1006, 1221, 1325
Hpy188I TCNGA 3 cut(s) 74, 585, 925
Hpy188III TCNNGA 6 cut(s) 79, 427, 548, 661, 1109, 1230
Hpy8I GTNNAC 6 cut(s) 351, 767, 991, 1006, 1221, 1325
Hpy99I CGWCG 5 cut(s) 25, 154, 265, 1083, 1599
HpyAV CCTTC 6 cut(s) 97, 121, 172, 732, 844, 1338
HpyCH4III ACNGT 4 cut(s) 581, 616, 638, 745
HpyCH4IV ACGT 3 cut(s) 670, 1008, 1597
HpySE526I ACGT 3 cut(s) 670, 1008, 1597
Hsp92II CATG 4 cut(s) 577, 664, 982, 1354
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 1 cut(s) 475
LweI GCATC 5 cut(s) 520, 654, 1171, 1253, 1262
MaeI CTAG 5 cut(s) 762, 777, 1224, 1448, 1545
MaeII ACGT 3 cut(s) 670, 1008, 1597
MaeIII GTNAC 1 cut(s) 745
MalI GATC 1 cut(s) 477
MboI GATC 1 cut(s) 475
MhlI GDGCHC 3 cut(s) 161, 441, 993
MluCI AATT 2 cut(s) 919, 1185
MlyI GAGTC 1 cut(s) 724
MmeI TCCRAC 1 cut(s) 1190
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 2 cut(s) 629, 917
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 735, 753
MvaI CCWGG 2 cut(s) 735, 753
NcoI CCATGG 1 cut(s) 573
NdeII GATC 1 cut(s) 475
NlaIII CATG 4 cut(s) 577, 664, 982, 1354
NlaIV GGNNCC 4 cut(s) 366, 382, 949, 1263
NmeAIII GCCGAG 2 cut(s) 150, 180
PagI TCATGA 1 cut(s) 660
PcsI WCGNNNNNNNCGW 2 cut(s) 1430, 1591
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 5 cut(s) 75, 407, 418, 497, 1091
PflMI CCANNNNNTGG 1 cut(s) 472
PfoI TCCNGGA 1 cut(s) 733
PleI GAGTC 1 cut(s) 724
PmaCI CACGTG 1 cut(s) 1009
PmlI CACGTG 1 cut(s) 1009
PpsI GAGTC 1 cut(s) 724
Ppu21I YACGTR 1 cut(s) 1009
Psp6I CCWGG 2 cut(s) 733, 751
PspCI CACGTG 1 cut(s) 1009
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 2 cut(s) 733, 751
PspN4I GGNNCC 4 cut(s) 366, 382, 949, 1263
PspPI GGNCC 3 cut(s) 577, 1409, 1523
PstI CTGCAG 3 cut(s) 600, 1279, 1288
PstNI CAGNNNCTG 4 cut(s) 223, 472, 604, 1283
RsaI GTAC 5 cut(s) 452, 568, 703, 1040, 1324
RsaNI GTAC 5 cut(s) 451, 567, 702, 1039, 1323
SaqAI TTAA 2 cut(s) 629, 917
Sau3AI GATC 1 cut(s) 475
Sau96I GGNCC 3 cut(s) 577, 1409, 1523
SchI GAGTC 1 cut(s) 724
ScrFI CCNGG 2 cut(s) 735, 753
SduI GDGCHC 3 cut(s) 161, 441, 993
SfaNI GCATC 5 cut(s) 520, 654, 1171, 1253, 1262
SfcI CTRYAG 4 cut(s) 596, 783, 1275, 1284
SinI GGWCC 3 cut(s) 577, 1409, 1523
SmlI CTYRAG 2 cut(s) 1109, 1236
SmoI CTYRAG 2 cut(s) 1109, 1236
SpeI ACTAGT 2 cut(s) 761, 776
Sse9I AATT 2 cut(s) 919, 1185
SsiI CCGC 9 cut(s) 32, 53, 233, 266, 329, 883, 1241, 1332, 1427
SspMI CTAG 5 cut(s) 762, 777, 1224, 1448, 1545
StyD4I CCNGG 2 cut(s) 733, 751
StyI CCWWGG 3 cut(s) 573, 818, 1467
TaaI ACNGT 4 cut(s) 581, 616, 638, 745
TaiI ACGT 3 cut(s) 673, 1011, 1600
TaqI TCGA 1 cut(s) 903
TaqII GACCGA 1 cut(s) 1575
TasI AATT 2 cut(s) 919, 1185
TatI WGTACW 2 cut(s) 1038, 1322
TauI GCSGC 7 cut(s) 55, 235, 268, 331, 885, 1244, 1429
TfiI GAWTC 5 cut(s) 75, 407, 418, 497, 1091
Tru1I TTAA 2 cut(s) 629, 917
Tru9I TTAA 2 cut(s) 629, 917
TscAI CASTG 3 cut(s) 485, 643, 721
TspDTI ATGAA 6 cut(s) 649, 1022, 1067, 1284, 1347, 1485
TspRI CASTG 3 cut(s) 485, 643, 721
Van91I CCANNNNNTGG 1 cut(s) 472
VneI GTGCAC 1 cut(s) 989
VpaK11BI GGWCC 3 cut(s) 577, 1409, 1523
XagI CCTNNNNNAGG 1 cut(s) 1488
XapI RAATTY 1 cut(s) 919
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 5 cut(s) 762, 777, 1224, 1448, 1545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.