Rroxscaffold_2G00139410

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
77820434 .. 77825061
4628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139410.1

Sequence Viewer

Length: 1608 bp
ATGTCGTTCTCCCTATTCTCATCGGCGCAACCGCAGCAAACGCCGCAGCCACAATCCTCCCTCTTCCAAACCCCAAGCCTCTTCCAAACCCAACAATCCCCAAACCCCTTTCAGCAAACCCAGCAATCCCCAAACCCCTTCCAGCAATCCCCGAGCCTTTTCCAGCAAACTCAGCAGTCCCCGAGCCCTTTTCAGCAAAGCCCTTCTCTGTTCTCGCAACCCCAGCAGCAGCAGCAACAGTCGCCGTTTCCGCCGCAGCAGTTTCAGTCTCAGTCGCCGCTTCAATTTCAGCCGCCGCCGCAGCAGCAGCAACAGCAGCCGCAGCAGCAGCAGCAGCAACAGTTGTTTTTGTTTACTACTGACAAGACTCCGGCGAGTTACGGCACCAAGTGGGCCGATTTACACCCCGATTCGCAGAAGATTCTGCTCCAGATTGAGGAACGCATACTGGGGTACAGGGATGAGAGCCAAAGGCTGGATCAGTCTAGTCGTCTCTATGATTCTTCAGTTTCCAATGATGGGTTCGAGCAGGATGCAAGTCGTATCATTCAGGAGCTTGGGGGAATTGGTACTGGCATGGACCGACAGAAAGCTCTGCTGCAGGAGCTGATGGCTACCGTGAAAGAGATGTTACGGAACAGTGAGGTTGCTGTTCGTTCTTTCATGATGCTACGTCCAAGGTTTCTTCGTCCAAATGCAGGAGGTACTTCAAATGGCACTGCAGCGTCACAGGCTCCAGGAGCAACAGAAACACCAGGCTCAACTAGTCAACCAACAACTACTTCTATAGTTCCAGTTTTTGACTTCTATAATGGAGTTCCAAGGAAACCATCCCCCTTCTTACAGCACACAATTGCAAGATTTGAGAAGTATCTTGGTGAGTGCCGCCAATGGATTGAAGAAATAGAGCAGCTCCTTTTAAATTCAGAGAGGAACTCTTCCAATGATGGATCCTCATTGTTGCAATCTCTCCCAAAAGTCATGTCAAATGTGCATGACTTTTTTGTTCACGTGGCTGCTAAGGTGGAGAGTATTCATCAGTACATTGTATCCATGAAAGCAGCTTATCTTGCTAACCAGCGTCGCCTAGGGGATGGGAATGACCCATTTCTTGAGGCTGATAGGCGGGAAACAGCAAGGCAAGAAGCTGCTGCTAAGAGAGTGCATCCAACTTTGCATTTACCTGCAATTTCACAACCATCAACACAAGTGGCTGGATTGTTGGCTAGCTCAGGAAGTCAAGCGGCATCAACAGCATCAACGGCTCCACAGACATCTGCAGCTACTACAACAGCTTCATCTGGGAGTGCATTCTCACTTTTCAGTACACCTTCCGCTCCATCTTCTTCTTCCATGGCTTCATCTTTGTTTGCAACACCAGCCACTCCTGCTCCAGTATCTTCTCTTTTTGGACCATCATCTGCTACGCCCCAGACATCAACTGCTTCTCAGCTAGGCAATACTGCTCAGGCCTTGGGTTCTACTACTCCTGTGGGAGGTTCATTATTTTCTACTCCATTTGCTTCCGGTCCTGCAACATCATTTGGGTCTAGCTTTGGGGCTGCAACGAAATCAACAAAGCCAAAAACTCGGTCTGGCCGACGTTAG

Protein Analysis

535

Amino Acids

57.88

Weight (kDa)

9.11

Isoelectric Point (pI)

82.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin_FG2 PF15967 277 - 386 7.2e-07 Nucleoporin FG repeated region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013560)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1192
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 475
AccBSI CCGCTC 1 cut(s) 1337
AclWI GGATC 3 cut(s) 486, 945, 958
AcoI YGGCCR 1 cut(s) 1597
AcsI RAATTY 1 cut(s) 922
AcuI CTGAAG 1 cut(s) 489
AcvI CACGTG 1 cut(s) 1012
AdeI CACNNNGTG 1 cut(s) 390
AfaI GTAC 5 cut(s) 455, 571, 706, 1043, 1327
AfiI CCNNNNNNNGG 5 cut(s) 436, 475, 519, 698, 1496
AgsI TTSAA 3 cut(s) 284, 711, 899
AhlI ACTAGT 1 cut(s) 764
AjnI CCWGG 2 cut(s) 736, 754
AjuI GAANNNNNNNTTGG 4 cut(s) 506, 538, 766, 798
Alw26I GTCTC 2 cut(s) 273, 497
AlwI GGATC 3 cut(s) 486, 945, 958
AlwNI CAGNNNCTG 1 cut(s) 607
Ama87I CYCGRG 2 cut(s) 151, 181
AoxI GGCC 3 cut(s) 393, 1470, 1597
ApoI RAATTY 1 cut(s) 922
ArsI GACNNNNNNTTYG 3 cut(s) 968, 1000, 1577
AspA2I CCTAGG 1 cut(s) 1087
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 4 cut(s) 393, 580, 1412, 1529
AsuHPI GGTGA 1 cut(s) 890
AsuNHI GCTAGC 1 cut(s) 1226
AvaI CYCGRG 2 cut(s) 151, 181
AvaII GGWCC 3 cut(s) 580, 1412, 1529
AvrII CCTAGG 1 cut(s) 1087
BamHI GGATCC 1 cut(s) 950
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 188
BbrPI CACGTG 1 cut(s) 1012
BccI CCATC 8 cut(s) 512, 604, 838, 941, 1088, 1207, 1348, 1423
BceAI ACGGC 3 cut(s) 229, 397, 1278
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciT130I CCWGG 2 cut(s) 738, 756
BciVI GTATCC 1 cut(s) 1060
BcoDI GTCTC 2 cut(s) 273, 497
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 6 cut(s) 486, 765, 1088, 1227, 1454, 1551
BfmI CTRYAG 4 cut(s) 599, 720, 786, 1278
BfuAI ACCTGC 1 cut(s) 1192
BfuI GTATCC 1 cut(s) 1060
BlnI CCTAGG 1 cut(s) 1087
Bme1390I CCNGG 2 cut(s) 738, 756
Bme18I GGWCC 3 cut(s) 580, 1412, 1529
BmeT110I CYCGRG 2 cut(s) 151, 181
BmgT120I GGNCC 4 cut(s) 393, 580, 1412, 1529
BmiI GGNNCC 4 cut(s) 385, 735, 952, 1266
BmrFI CCNGG 2 cut(s) 738, 756
BmrI ACTGGG 1 cut(s) 458
BmsI GCATC 5 cut(s) 523, 657, 1174, 1256, 1265
BmtI GCTAGC 1 cut(s) 1230
BmuI ACTGGG 1 cut(s) 458
BplI GAGNNNNNCTC 2 cut(s) 920, 952
BpmI CTGGAG 3 cut(s) 413, 720, 1377
Bpu10I CCTNAGC 3 cut(s) 1020, 1231, 1467
BpuEI CTTGAG 1 cut(s) 1133
BsaAI YACGTR 1 cut(s) 1012
BsaJI CCNNGG 5 cut(s) 677, 821, 1087, 1353, 1473
BsaWI WCCGGW 1 cut(s) 1526
BsaXI ACNNNNNCTCC 2 cut(s) 1375, 1405
Bsc4I CCNNNNNNNGG 5 cut(s) 436, 475, 519, 698, 1496
Bse1I ACTGG 4 cut(s) 453, 577, 794, 1394
BseBI CCWGG 2 cut(s) 738, 756
BseDI CCNNGG 5 cut(s) 677, 821, 1087, 1353, 1473
BseGI GGATG 5 cut(s) 466, 538, 830, 1099, 1165
BseLI CCNNNNNNNGG 5 cut(s) 436, 475, 519, 698, 1496
BseMII CTCAG 5 cut(s) 185, 284, 1245, 1463, 1481
BseNI ACTGG 4 cut(s) 453, 577, 794, 1394
BseYI CCCAGC 2 cut(s) 120, 222
BshFI GGCC 3 cut(s) 395, 1472, 1599
BshNI GGYRCC 1 cut(s) 383
BsiHKCI CYCGRG 2 cut(s) 151, 181
BsiSI CCGG 2 cut(s) 371, 1527
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 5 cut(s) 436, 475, 519, 698, 1496
BsmAI GTCTC 2 cut(s) 273, 497
BsmBI CGTCTC 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 1310
BsnI GGCC 3 cut(s) 395, 1472, 1599
BsoBI CYCGRG 2 cut(s) 151, 181
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 478, 950
Bsp19I CCATGG 1 cut(s) 1353
BspANI GGCC 3 cut(s) 395, 1472, 1599
BspCNI CTCAG 5 cut(s) 184, 283, 1244, 1462, 1480
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 4 cut(s) 385, 735, 952, 1266
BspMAI CTGCAG 3 cut(s) 603, 724, 1282
BspMI ACCTGC 1 cut(s) 1192
BspOI GCTAGC 1 cut(s) 1230
BspPI GGATC 3 cut(s) 486, 945, 958
BspT107I GGYRCC 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 1337
BsrI ACTGG 4 cut(s) 453, 577, 794, 1394
BssECI CCNNGG 5 cut(s) 677, 821, 1087, 1353, 1473
BssMI GATC 2 cut(s) 478, 950
BssT1I CCWWGG 5 cut(s) 677, 821, 1087, 1353, 1473
Bst2UI CCWGG 2 cut(s) 738, 756
Bst4CI ACNGT 4 cut(s) 240, 342, 619, 641
Bst6I CTCTTC 3 cut(s) 68, 86, 943
BstBAI YACGTR 1 cut(s) 1012
BstC8I GCNNGC 1 cut(s) 1228
BstDEI CTNAG 7 cut(s) 171, 270, 1020, 1155, 1231, 1449, 1467
BstDSI CCRYGG 1 cut(s) 1353
BstENI CCTNNNNNAGG 1 cut(s) 1494
BstF5I GGATG 5 cut(s) 466, 538, 830, 1099, 1165
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 481, 953
BstMAI GTCTC 2 cut(s) 273, 497
BstMBI GATC 2 cut(s) 478, 950
BstNI CCWGG 2 cut(s) 738, 756
BstSCI CCNGG 2 cut(s) 736, 754
BstSFI CTRYAG 4 cut(s) 599, 720, 786, 1278
BstX2I RGATCY 1 cut(s) 950
BstYI RGATCY 1 cut(s) 950
BsuI GTATCC 1 cut(s) 1060
BsuRI GGCC 3 cut(s) 395, 1472, 1599
BtgI CCRYGG 1 cut(s) 1353
BtsCI GGATG 5 cut(s) 466, 538, 830, 1099, 1165
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 646, 717
BveI ACCTGC 1 cut(s) 1192
Cac8I GCNNGC 1 cut(s) 1228
CaiI CAGNNNCTG 1 cut(s) 607
CciI TCATGA 1 cut(s) 663
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 4 cut(s) 393, 580, 1412, 1529
CseI GACGC 2 cut(s) 714, 1070
Csp6I GTAC 5 cut(s) 454, 570, 705, 1042, 1326
CspCI CAANNNNNGTGG 2 cut(s) 1191, 1226
CviAII CATG 6 cut(s) 577, 664, 982, 995, 1054, 1354
CviQI GTAC 5 cut(s) 454, 570, 705, 1042, 1326
DdeI CTNAG 7 cut(s) 171, 270, 1020, 1155, 1231, 1449, 1467
DpnI GATC 2 cut(s) 480, 952
DpnII GATC 2 cut(s) 478, 950
DraI TTTAAA 1 cut(s) 921
DraIII CACNNNGTG 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 1597
Eam1104I CTCTTC 3 cut(s) 68, 86, 943
EarI CTCTTC 3 cut(s) 68, 86, 943
EciI GGCGGA 1 cut(s) 240
Eco130I CCWWGG 5 cut(s) 677, 821, 1087, 1353, 1473
Eco147I AGGCCT 1 cut(s) 1472
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 3 cut(s) 580, 1412, 1529
Eco57I CTGAAG 1 cut(s) 489
Eco72I CACGTG 1 cut(s) 1012
Eco88I CYCGRG 2 cut(s) 151, 181
EcoNI CCTNNNNNAGG 1 cut(s) 1494
EcoRII CCWGG 2 cut(s) 736, 754
EcoT14I CCWWGG 5 cut(s) 677, 821, 1087, 1353, 1473
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 5 cut(s) 677, 821, 1087, 1353, 1473
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 6 cut(s) 580, 667, 985, 998, 1057, 1357
FaqI GGGAC 1 cut(s) 163
FatI CATG 6 cut(s) 576, 663, 981, 994, 1053, 1353
FauI CCCGC 1 cut(s) 1119
FokI GGATG 5 cut(s) 473, 545, 817, 1106, 1152
FriOI GRGCYC 1 cut(s) 188
FspBI CTAG 6 cut(s) 486, 765, 1088, 1227, 1454, 1551
GlaI GCGC 1 cut(s) 27
GsaI CCCAGC 2 cut(s) 124, 226
GsuI CTGGAG 3 cut(s) 413, 720, 1377
HaeIII GGCC 3 cut(s) 395, 1472, 1599
HapII CCGG 2 cut(s) 371, 1527
HgaI GACGC 2 cut(s) 714, 1070
HhaI GCGC 1 cut(s) 28
Hin1II CATG 6 cut(s) 580, 667, 985, 998, 1057, 1357
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 770
HindII GTYRAC 1 cut(s) 770
HinfI GANTC 4 cut(s) 367, 410, 421, 500
HpaII CCGG 2 cut(s) 371, 1527
HphI GGTGA 1 cut(s) 890
Hpy166II GTNNAC 4 cut(s) 354, 770, 1009, 1328
Hpy188I TCNGA 1 cut(s) 928
Hpy188III TCNNGA 5 cut(s) 430, 551, 664, 1112, 1233
Hpy8I GTNNAC 4 cut(s) 354, 770, 1009, 1328
Hpy99I CGWCG 2 cut(s) 1086, 1605
HpyAV CCTTC 4 cut(s) 148, 213, 847, 1341
HpyCH4III ACNGT 4 cut(s) 240, 342, 619, 641
HpyCH4IV ACGT 3 cut(s) 673, 1011, 1603
HpyF3I CTNAG 7 cut(s) 171, 270, 1020, 1155, 1231, 1449, 1467
HpySE526I ACGT 3 cut(s) 673, 1011, 1603
Hsp92II CATG 6 cut(s) 580, 667, 985, 998, 1057, 1357
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 478, 950
LmnI GCTCC 9 cut(s) 432, 553, 604, 739, 740, 918, 1270, 1342, 1396
LweI GCATC 5 cut(s) 523, 657, 1174, 1256, 1265
MaeI CTAG 6 cut(s) 486, 765, 1088, 1227, 1454, 1551
MaeII ACGT 3 cut(s) 673, 1011, 1603
MaeIII GTNAC 3 cut(s) 377, 630, 726
MalI GATC 2 cut(s) 480, 952
MbiI CCGCTC 1 cut(s) 1337
MboI GATC 2 cut(s) 478, 950
MfeI CAATTG 1 cut(s) 852
MflI RGATCY 1 cut(s) 950
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 5 cut(s) 284, 564, 852, 922, 1188
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 1193
MseI TTAA 1 cut(s) 920
MspI CCGG 2 cut(s) 371, 1527
MspR9I CCNGG 2 cut(s) 738, 756
MunI CAATTG 1 cut(s) 852
Mva1269I GAATGC 1 cut(s) 1310
MvaI CCWGG 2 cut(s) 738, 756
NcoI CCATGG 1 cut(s) 1353
NdeII GATC 2 cut(s) 478, 950
NheI GCTAGC 1 cut(s) 1226
NlaIII CATG 6 cut(s) 580, 667, 985, 998, 1057, 1357
NlaIV GGNNCC 4 cut(s) 385, 735, 952, 1266
NmuCI GTSAC 1 cut(s) 726
PagI TCATGA 1 cut(s) 663
PceI AGGCCT 1 cut(s) 1472
PcsI WCGNNNNNNNCGW 1 cut(s) 1597
PctI GAATGC 1 cut(s) 1310
PfeI GAWTC 3 cut(s) 410, 421, 500
PflMI CCANNNNNTGG 1 cut(s) 475
PfoI TCCNGGA 1 cut(s) 736
PleI GAGTC 1 cut(s) 361
PmaCI CACGTG 1 cut(s) 1012
PmlI CACGTG 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 1012
Psp6I CCWGG 2 cut(s) 736, 754
PspCI CACGTG 1 cut(s) 1012
PspFI CCCAGC 2 cut(s) 120, 222
PspGI CCWGG 2 cut(s) 736, 754
PspN4I GGNNCC 4 cut(s) 385, 735, 952, 1266
PspPI GGNCC 4 cut(s) 393, 580, 1412, 1529
PstI CTGCAG 3 cut(s) 603, 724, 1282
PstNI CAGNNNCTG 1 cut(s) 607
PsuI RGATCY 1 cut(s) 950
RsaI GTAC 5 cut(s) 455, 571, 706, 1043, 1327
RsaNI GTAC 5 cut(s) 454, 570, 705, 1042, 1326
SaqAI TTAA 1 cut(s) 920
Sau3AI GATC 2 cut(s) 478, 950
Sau96I GGNCC 4 cut(s) 393, 580, 1412, 1529
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 738, 756
SduI GDGCHC 1 cut(s) 188
SfaNI GCATC 5 cut(s) 523, 657, 1174, 1256, 1265
SfcI CTRYAG 4 cut(s) 599, 720, 786, 1278
SinI GGWCC 3 cut(s) 580, 1412, 1529
SmlI CTYRAG 1 cut(s) 1112
SmoI CTYRAG 1 cut(s) 1112
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 5 cut(s) 284, 564, 852, 922, 1188
SseBI AGGCCT 1 cut(s) 1472
SspMI CTAG 6 cut(s) 486, 765, 1088, 1227, 1454, 1551
StuI AGGCCT 1 cut(s) 1472
StyD4I CCNGG 2 cut(s) 736, 754
StyI CCWWGG 5 cut(s) 677, 821, 1087, 1353, 1473
TaaI ACNGT 4 cut(s) 240, 342, 619, 641
TaiI ACGT 3 cut(s) 676, 1014, 1606
TaqI TCGA 1 cut(s) 525
TaqII GACCGA 2 cut(s) 597, 1581
TasI AATT 5 cut(s) 284, 564, 852, 922, 1188
TatI WGTACW 2 cut(s) 1041, 1325
TauI GCSGC 9 cut(s) 46, 256, 280, 295, 298, 301, 322, 888, 1247
TfiI GAWTC 3 cut(s) 410, 421, 500
Tru1I TTAA 1 cut(s) 920
Tru9I TTAA 1 cut(s) 920
TscAI CASTG 2 cut(s) 646, 724
TseFI GTSAC 1 cut(s) 726
Tsp45I GTSAC 1 cut(s) 726
TspDTI ATGAA 6 cut(s) 652, 1025, 1070, 1287, 1350, 1491
TspGWI ACGGA 1 cut(s) 649
TspRI CASTG 2 cut(s) 646, 724
Van91I CCANNNNNTGG 1 cut(s) 475
VpaK11BI GGWCC 3 cut(s) 580, 1412, 1529
XagI CCTNNNNNAGG 1 cut(s) 1494
XapI RAATTY 1 cut(s) 922
XmaJI CCTAGG 1 cut(s) 1087
XspI CTAG 6 cut(s) 486, 765, 1088, 1227, 1454, 1551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.