pycom02g12740

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
9303183 .. 9307215
4033 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12740.4

Sequence Viewer

Length: 1512 bp
ATGGCGTTCGCGTCGTTGTTCTCTACGCCGCAGCCACAACTGCAGCAGCAGCAGCAATCGCCGTTTCAAACTCAACAGCCCTCACAGCCCTTTCTGCAAAGCAGCTCTTTCTTCTCCCAACAACCACCGCAGCAGCAGCAGCAACAGACGCCGCTGTTTCAACAGCCGCAATTCCAGCAGCAGCAGCCGCTGTTTCAACAGCCGCAATTTCAGCAACAGCAGCAGCAGCAACAGCAATTGTATTTGTTTACTAATGACAAGACTACGGCGAGTTATGGTACCAAGTGGGCGGATCTCCATCCGGATTCCCAGAAAATTCTTCTGCAGATTGAGGAACGGATACTGGGGTATAGGGATGAAAGCCAGCGGCTGGATCAGTGTAGTCGTCTCTACGATTCCTCCATTTCCAATGATGCTTTCGAGCATGACGCAAGTCGTATTCTTCAGGAACTTGGGGGAATTGGTACTTCCATGGACCGACAGAAAGCTCTTTTGCAGGAGTTGATGGCTATTGTGAAAGACATGTTGCGGAACAGCGAGGTTGCTGTTCGTTCTTTTATGATTTTACGCCCAAGGTTTCTTCATCTGAATGCAGGAAGTACTTCAAATGCCACTGCCCCATCACAAGCTCCTGGAGCAACAGTACCACCAGGTTCAAGTAGTCAACTAACAACTAGTTCTATAGTGCCAGTTTTTGATTTCTACAACGGGATTCCGAGGAAACCATCTCCGTTCCTACAGCAAACAATTGCAAGATTTGAGAAGTATCTTGTTGAGTGTCGCCAGTGGATTGAGGAATTAGAGCAGCTGCTTCTAGACTCTGAGAGGAACCCAGCCAATGATAGATCCTCGTTGTTGCAGTCTCTTCCAAAAGTCATGTCAAATGTGCATGATTTTTTCGTTCACGTGGCAGCTAAGCTGGAGAGTATTCATCAGTACGTTGTGTCCATGAAAACAGCTTATCTTGTTAATGAGCGCCGCCAAGGGTATGGGAATGATCCATTTCTCGAGGCTGATCGGCGGGAAACAGCTAGGCAAGAAGCTGCTGCTAAGAGGGTGCATCCAACTTTGCATTTACCTGCAACGTTGCAACCATCAACACAAGTTGCTGGATTGTTTGCTAGTTCAGGAACCCCTGGGACATCTACCACCCCACAGACGTCTGCTGCAGCTACCATTACAGCTTCATCTGGGAGTGGACTTTTCAGTACCCCTTCTGCTTCATCTGCTCCAGTGTCTTCCTCTCTATTTGCTACACCACCCACTACGGGTCCTGCATCTTCTCTTTTTGCAACGCCATTTTCTACGCCCCAGGCATCAATGTTTAGTTCTTCATCAGCATTTGGACCTGCTTCAACTCCCTCTCTGTTTCCCAATCCTGCTCCAGGCTTCGGTTCTACTCCAACTATAGGAAATTCATTATTTACTTCAGGTAGTGCTGGATCAGGGCTGAATTCTAGCTTTACTGCAATGAAATCAGCAAAGCCGAAAAGTCGAACTAGCCGCCGTTAG

Protein Analysis

504

Amino Acids

55.06

Weight (kDa)

8.98

Isoelectric Point (pI)

70.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013560)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1163
Acc36I ACCTGC 2 cut(s) 1087, 1357
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 370
AccII CGCG 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 301
AclI AACGTT 1 cut(s) 1085
AclWI GGATC 5 cut(s) 300, 381, 840, 992, 1450
AcsI RAATTY 3 cut(s) 315, 1414, 1453
AcuI CTGAAG 2 cut(s) 428, 1413
AcvI CACGTG 1 cut(s) 907
AcyI GRCGYC 2 cut(s) 149, 1160
AfaI GTAC 6 cut(s) 280, 466, 601, 645, 938, 1210
AfiI CCNNNNNNNGG 5 cut(s) 370, 1268, 1385, 1391, 1409
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 6 cut(s) 68, 161, 197, 606, 657, 1356
AhlI ACTAGT 1 cut(s) 674
AjnI CCWGG 5 cut(s) 631, 649, 1135, 1311, 1384
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
Alw26I GTCTC 2 cut(s) 392, 867
AlwI GGATC 5 cut(s) 300, 381, 840, 992, 1450
AlwNI CAGNNNCTG 2 cut(s) 190, 370
Ama87I CYCGRG 1 cut(s) 1007
Aor13HI TCCGGA 1 cut(s) 301
ApoI RAATTY 3 cut(s) 315, 1414, 1453
ArsI GACNNNNNNTTYG 2 cut(s) 863, 895
Asp700I GAANNNNTTC 1 cut(s) 601
Asp718I GGTACC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 978
AspS9I GGNCC 3 cut(s) 475, 1271, 1346
AvaI CYCGRG 1 cut(s) 1007
AvaII GGWCC 3 cut(s) 475, 1271, 1346
BaeI ACNNNNGTAYC 2 cut(s) 332, 365
BanI GGYRCC 1 cut(s) 278
BbrPI CACGTG 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 1230
BccI CCATC 5 cut(s) 306, 499, 628, 733, 1102
BceAI ACGGC 3 cut(s) 46, 282, 1491
BciT130I CCWGG 5 cut(s) 633, 651, 1137, 1313, 1386
BciVI GTATCC 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 392, 867
BcuI ACTAGT 1 cut(s) 674
BfaI CTAG 6 cut(s) 675, 815, 1032, 1122, 1458, 1500
BfmI CTRYAG 6 cut(s) 41, 323, 681, 737, 1167, 1407
BfoI RGCGCY 1 cut(s) 979
BfuAI ACCTGC 2 cut(s) 1087, 1357
BfuI GTATCC 1 cut(s) 333
BlpI GCTNAGC 1 cut(s) 915
BmcAI AGTACT 1 cut(s) 601
Bme1390I CCNGG 5 cut(s) 633, 651, 1137, 1313, 1386
Bme18I GGWCC 3 cut(s) 475, 1271, 1346
BmeT110I CYCGRG 1 cut(s) 1007
BmgT120I GGNCC 3 cut(s) 475, 1271, 1346
BmiI GGNNCC 4 cut(s) 280, 830, 1132, 1272
BmrFI CCNGG 5 cut(s) 633, 651, 1137, 1313, 1386
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 4 cut(s) 403, 1069, 1286, 1325
BmuI ACTGGG 1 cut(s) 353
BoxI GACNNNNGTC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 1230
BpmI CTGGAG 4 cut(s) 654, 941, 1215, 1368
Bpu1102I GCTNAGC 1 cut(s) 915
BsaAI YACGTR 1 cut(s) 907
BsaBI GATNNNNATC 1 cut(s) 297
BsaHI GRCGYC 2 cut(s) 149, 1160
BsaJI CCNNGG 7 cut(s) 471, 572, 716, 982, 1135, 1136, 1311
BsaWI WCCGGW 1 cut(s) 301
BsaXI ACNNNNNCTCC 4 cut(s) 383, 413, 627, 657
Bsc4I CCNNNNNNNGG 5 cut(s) 370, 1268, 1385, 1391, 1409
Bse1I ACTGG 4 cut(s) 348, 689, 784, 1232
Bse3DI GCAATG 1 cut(s) 1476
Bse8I GATNNNNATC 1 cut(s) 297
BseAI TCCGGA 1 cut(s) 301
BseBI CCWGG 5 cut(s) 633, 651, 1137, 1313, 1386
BseDI CCNNGG 7 cut(s) 471, 572, 716, 982, 1135, 1136, 1311
BseGI GGATG 3 cut(s) 298, 361, 1060
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 5 cut(s) 370, 1268, 1385, 1391, 1409
BseMI GCAATG 1 cut(s) 1476
BseMII CTCAG 1 cut(s) 813
BseNI ACTGG 4 cut(s) 348, 689, 784, 1232
BseYI CCCAGC 1 cut(s) 832
Bsh1236I CGCG 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 1007
BsiSI CCGG 1 cut(s) 302
BslFI GGGAC 1 cut(s) 1153
BslI CCNNNNNNNGG 5 cut(s) 370, 1268, 1385, 1391, 1409
BsmAI GTCTC 2 cut(s) 392, 867
BsmBI CGTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 1153
BsmI GAATGC 1 cut(s) 595
BsoBI CYCGRG 1 cut(s) 1007
Bsp13I TCCGGA 1 cut(s) 301
Bsp143I GATC 6 cut(s) 292, 373, 845, 997, 1015, 1442
Bsp1720I GCTNAGC 1 cut(s) 915
Bsp19I CCATGG 1 cut(s) 471
BspCNI CTCAG 1 cut(s) 814
BspEI TCCGGA 1 cut(s) 301
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 4 cut(s) 280, 830, 1132, 1272
BspMAI CTGCAG 3 cut(s) 45, 327, 1171
BspMI ACCTGC 2 cut(s) 1087, 1357
BspPI GGATC 5 cut(s) 300, 381, 840, 992, 1450
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 1476
BsrI ACTGG 4 cut(s) 348, 689, 784, 1232
BssECI CCNNGG 7 cut(s) 471, 572, 716, 982, 1135, 1136, 1311
BssMI GATC 6 cut(s) 292, 373, 845, 997, 1015, 1442
BssNI GRCGYC 2 cut(s) 149, 1160
BssT1I CCWWGG 3 cut(s) 471, 572, 982
Bst2UI CCWGG 5 cut(s) 633, 651, 1137, 1313, 1386
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 1 cut(s) 870
BstACI GRCGYC 2 cut(s) 149, 1160
BstBAI YACGTR 1 cut(s) 907
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 3 cut(s) 822, 915, 1050
BstDSI CCRYGG 1 cut(s) 471
BstENI CCTNNNNNAGG 1 cut(s) 1383
BstF5I GGATG 3 cut(s) 298, 361, 1060
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 979
BstHHI GCGC 1 cut(s) 978
BstKTI GATC 6 cut(s) 295, 376, 848, 1000, 1018, 1445
BstMAI GTCTC 2 cut(s) 392, 867
BstMBI GATC 6 cut(s) 292, 373, 845, 997, 1015, 1442
BstNI CCWGG 5 cut(s) 633, 651, 1137, 1313, 1386
BstNSI RCATGY 1 cut(s) 526
BstPAI GACNNNNGTC 1 cut(s) 432
BstSCI CCNGG 5 cut(s) 631, 649, 1135, 1311, 1384
BstSFI CTRYAG 6 cut(s) 41, 323, 681, 737, 1167, 1407
BstUI CGCG 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 1230
BstX2I RGATCY 2 cut(s) 292, 845
BstXI CCANNNNNNTGG 1 cut(s) 989
BstYI RGATCY 2 cut(s) 292, 845
BsuI GTATCC 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 3 cut(s) 298, 361, 1060
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 4 cut(s) 383, 612, 791, 1239
BveI ACCTGC 2 cut(s) 1087, 1357
Cac8I GCNNGC 1 cut(s) 365
CaiI CAGNNNCTG 2 cut(s) 190, 370
CfoI GCGC 1 cut(s) 978
Cfr13I GGNCC 3 cut(s) 475, 1271, 1346
CseI GACGC 2 cut(s) 157, 437
CsiI ACCWGGT 1 cut(s) 649
Csp6I GTAC 6 cut(s) 279, 465, 600, 644, 937, 1209
CviAII CATG 6 cut(s) 425, 472, 523, 877, 890, 949
CviQI GTAC 6 cut(s) 279, 465, 600, 644, 937, 1209
DdeI CTNAG 3 cut(s) 822, 915, 1050
DpnI GATC 6 cut(s) 294, 375, 847, 999, 1017, 1444
DpnII GATC 6 cut(s) 292, 373, 845, 997, 1015, 1442
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 3 cut(s) 471, 572, 982
Eco47I GGWCC 3 cut(s) 475, 1271, 1346
Eco57I CTGAAG 2 cut(s) 428, 1413
Eco72I CACGTG 1 cut(s) 907
Eco88I CYCGRG 1 cut(s) 1007
EcoNI CCTNNNNNAGG 1 cut(s) 1383
EcoO109I RGGNCCY 1 cut(s) 1271
EcoRI GAATTC 1 cut(s) 1453
EcoRII CCWGG 5 cut(s) 631, 649, 1135, 1311, 1384
EcoT14I CCWWGG 3 cut(s) 471, 572, 982
ErhI CCWWGG 3 cut(s) 471, 572, 982
Esp3I CGTCTC 1 cut(s) 392
FaeI CATG 6 cut(s) 428, 475, 526, 880, 893, 952
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FaqI GGGAC 1 cut(s) 1153
FatI CATG 6 cut(s) 424, 471, 522, 876, 889, 948
FauI CCCGC 1 cut(s) 1014
FokI GGATG 3 cut(s) 285, 368, 1047
FspBI CTAG 6 cut(s) 675, 815, 1032, 1122, 1458, 1500
GlaI GCGC 1 cut(s) 977
GsaI CCCAGC 1 cut(s) 836
GsuI CTGGAG 4 cut(s) 654, 941, 1215, 1368
HaeII RGCGCY 1 cut(s) 979
HapII CCGG 1 cut(s) 302
HgaI GACGC 2 cut(s) 157, 437
HhaI GCGC 1 cut(s) 978
Hin1I GRCGYC 2 cut(s) 149, 1160
Hin1II CATG 6 cut(s) 428, 475, 526, 880, 893, 952
Hin6I GCGC 1 cut(s) 976
HinP1I GCGC 1 cut(s) 976
HincII GTYRAC 1 cut(s) 665
HindII GTYRAC 1 cut(s) 665
HinfI GANTC 4 cut(s) 305, 395, 712, 818
HpaII CCGG 1 cut(s) 302
Hpy166II GTNNAC 4 cut(s) 249, 665, 904, 1199
Hpy188I TCNGA 3 cut(s) 588, 717, 823
Hpy188III TCNNGA 5 cut(s) 302, 446, 815, 1007, 1128
Hpy8I GTNNAC 4 cut(s) 249, 665, 904, 1199
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 1224
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 4 cut(s) 906, 939, 1085, 1160
HpyF3I CTNAG 3 cut(s) 822, 915, 1050
HpySE526I ACGT 4 cut(s) 906, 939, 1085, 1160
Hsp92I GRCGYC 2 cut(s) 149, 1160
Hsp92II CATG 6 cut(s) 428, 475, 526, 880, 893, 952
HspAI GCGC 1 cut(s) 976
Kpn2I TCCGGA 1 cut(s) 301
KpnI GGTACC 1 cut(s) 282
Kzo9I GATC 6 cut(s) 292, 373, 845, 997, 1015, 1442
LmnI GCTCC 4 cut(s) 634, 635, 1234, 1387
LweI GCATC 4 cut(s) 403, 1069, 1286, 1325
MabI ACCWGGT 1 cut(s) 649
MaeI CTAG 6 cut(s) 675, 815, 1032, 1122, 1458, 1500
MaeII ACGT 4 cut(s) 906, 939, 1085, 1160
MalI GATC 6 cut(s) 294, 375, 847, 999, 1017, 1444
MboI GATC 6 cut(s) 292, 373, 845, 997, 1015, 1442
MboII GAAGA 8 cut(s) 103, 311, 434, 572, 857, 1230, 1272, 1323
MfeI CAATTG 2 cut(s) 236, 747
MflI RGATCY 2 cut(s) 292, 845
MluCI AATT 9 cut(s) 170, 206, 236, 315, 459, 747, 797, 1414, 1453
MlyI GAGTC 1 cut(s) 812
MmeI TCCRAC 2 cut(s) 1088, 1427
MroI TCCGGA 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 601
MseI TTAA 1 cut(s) 969
MslI CAYNNNNRTG 1 cut(s) 588
MspA1I CMGCKG 4 cut(s) 154, 190, 367, 808
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 5 cut(s) 633, 651, 1137, 1313, 1386
MunI CAATTG 2 cut(s) 236, 747
Mva1269I GAATGC 1 cut(s) 595
MvaI CCWGG 5 cut(s) 633, 651, 1137, 1313, 1386
MvnI CGCG 1 cut(s) 11
NcoI CCATGG 1 cut(s) 471
NdeII GATC 6 cut(s) 292, 373, 845, 997, 1015, 1442
NlaIII CATG 6 cut(s) 428, 475, 526, 880, 893, 952
NlaIV GGNNCC 4 cut(s) 280, 830, 1132, 1272
NspI RCATGY 1 cut(s) 526
PaeR7I CTCGAG 1 cut(s) 1007
PasI CCCWGGG 1 cut(s) 1136
PciI ACATGT 1 cut(s) 522
PctI GAATGC 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 601
PfeI GAWTC 3 cut(s) 305, 395, 712
PflMI CCANNNNNTGG 1 cut(s) 370
PfoI TCCNGGA 1 cut(s) 631
PleI GAGTC 1 cut(s) 812
PmaCI CACGTG 1 cut(s) 907
PmlI CACGTG 1 cut(s) 907
PpsI GAGTC 1 cut(s) 812
Ppu21I YACGTR 1 cut(s) 907
PpuMI RGGWCCY 1 cut(s) 1271
PscI ACATGT 1 cut(s) 522
PshAI GACNNNNGTC 1 cut(s) 432
Psp1406I AACGTT 1 cut(s) 1085
Psp5II RGGWCCY 1 cut(s) 1271
Psp6I CCWGG 5 cut(s) 631, 649, 1135, 1311, 1384
PspCI CACGTG 1 cut(s) 907
PspFI CCCAGC 1 cut(s) 832
PspGI CCWGG 5 cut(s) 631, 649, 1135, 1311, 1384
PspN4I GGNNCC 4 cut(s) 280, 830, 1132, 1272
PspPI GGNCC 3 cut(s) 475, 1271, 1346
PspPPI RGGWCCY 1 cut(s) 1271
PstI CTGCAG 3 cut(s) 45, 327, 1171
PstNI CAGNNNCTG 2 cut(s) 190, 370
PsuI RGATCY 2 cut(s) 292, 845
PvuII CAGCTG 1 cut(s) 808
RsaI GTAC 6 cut(s) 280, 466, 601, 645, 938, 1210
RsaNI GTAC 6 cut(s) 279, 465, 600, 644, 937, 1209
RseI CAYNNNNRTG 1 cut(s) 588
SaqAI TTAA 1 cut(s) 969
Sau3AI GATC 6 cut(s) 292, 373, 845, 997, 1015, 1442
Sau96I GGNCC 3 cut(s) 475, 1271, 1346
ScaI AGTACT 1 cut(s) 601
SchI GAGTC 1 cut(s) 812
ScrFI CCNGG 5 cut(s) 633, 651, 1137, 1313, 1386
SexAI ACCWGGT 1 cut(s) 649
SfaNI GCATC 4 cut(s) 403, 1069, 1286, 1325
SfcI CTRYAG 6 cut(s) 41, 323, 681, 737, 1167, 1407
Sfr274I CTCGAG 1 cut(s) 1007
SinI GGWCC 3 cut(s) 475, 1271, 1346
SlaI CTCGAG 1 cut(s) 1007
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 1007
SmoI CTYRAG 1 cut(s) 1007
SpeI ACTAGT 1 cut(s) 674
Sse9I AATT 9 cut(s) 170, 206, 236, 315, 459, 747, 797, 1414, 1453
SspMI CTAG 6 cut(s) 675, 815, 1032, 1122, 1458, 1500
StyD4I CCNGG 5 cut(s) 631, 649, 1135, 1311, 1384
StyI CCWWGG 3 cut(s) 471, 572, 982
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 4 cut(s) 909, 942, 1088, 1163
TaqI TCGA 3 cut(s) 420, 1008, 1495
TaqII GACCGA 1 cut(s) 492
TasI AATT 9 cut(s) 170, 206, 236, 315, 459, 747, 797, 1414, 1453
TatI WGTACW 1 cut(s) 599
TauI GCSGC 8 cut(s) 31, 154, 169, 190, 205, 370, 981, 1506
TfiI GAWTC 3 cut(s) 305, 395, 712
Tru1I TTAA 1 cut(s) 969
Tru9I TTAA 1 cut(s) 969
TscAI CASTG 4 cut(s) 383, 619, 791, 1239
TspDTI ATGAA 9 cut(s) 372, 572, 920, 965, 1176, 1212, 1323, 1407, 1487
TspGWI ACGGA 2 cut(s) 352, 720
TspRI CASTG 4 cut(s) 383, 619, 791, 1239
Van91I CCANNNNNTGG 1 cut(s) 370
VpaK11BI GGWCC 3 cut(s) 475, 1271, 1346
XagI CCTNNNNNAGG 1 cut(s) 1383
XapI RAATTY 3 cut(s) 315, 1414, 1453
XbaI TCTAGA 1 cut(s) 814
XceI RCATGY 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 1007
XmnI GAANNNNTTC 1 cut(s) 601
XspI CTAG 6 cut(s) 675, 815, 1032, 1122, 1458, 1500
ZraI GACGTC 1 cut(s) 1161
ZrmI AGTACT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.