Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00256

Orthogroup ID

OG0013560

Physical Location & Seq

Genomic Coordinates Reverse (-)

48820 .. 51259

Gene Structure 2440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCAGGAGCTTGGGGGAATTGGTACTGCCATGGACCGACAGAAAGCTCTGCTGCAGGAGCTGATGGCTACCGTGAAAGAGATGTTACGGAACAGTGAGGTTGCTGTACGTTCTTTCATGATGCTACGTCCAAGGTTTCTTCGTCCAAATGCAGGAGGTACTTCAAATGGCACTGCAGCGTCACAGGCTCCTGGAGCAACAGAAACACCAGGCTCAACTAGTCAACCAACAACTACTTCTATAGTTCCAGTTTTTGACTTCTATAATGGAGTTCCAAGGAAACCATCCCCCTTCTTACAGCACACAATTGCAAGATTTGAGAAATATCTTGGTGAGTGCCGCCAATGGATTGAAGAAATAGAGCAGCTCCTTTTAAATTCAGAGAGGAATTCTTCCAATGATGGATCCTCATTGTTGCAATCTCTCCCAAAAGTCATGTCAAATGTGCATGACTTTTTTGTTCACGTGGCTGCTAAGGTGGAGAGTATTCATCAGTACATTGTATCCATGAAAGCAGCTTATCTTGCTAACCAGCGTCGCCTAGGGGATGGGAATGACCCATTCTTGGCTGCTGCTAAGAGAGTGCATCCAACTTTGCATTTACCTGCAATTTCACAACCATCAAACAAGTGGCTGGATTGTTGGCTAGCTCAGGAAGTCAGGCGGCATCAACGGCTCCACCAGACATCTGCAGCTACTACAACAGCTTCATCTGGGAGTGCATTCTCACTTTTCAGTACACCTTCCGCTCCATCTTCTTCTTCCATGGCTTCATCTTTGTTTGCAACACCAACCACTCCTGCTCCAAATACTGCTCAGGCCTTGGGTTCTACTACTCCTGTGGGAGGTTCATTATTTTCTACTCCATTTGCTTCCGGTCCTGCAACATCATTTGGGTCTAGCTTTGGGGCTGCAACGAAATCAACAAAGCCAAAAACTCGGTCTAGCCGACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_FG2

Protein Analysis

318

Amino Acids

34.2

Weight (kDa)

10.0

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37130
fragaria_vesca	FvH4_1g14810
malus_domestica	MD02G1161300.v1.1 MD15G1275400.v1.1
prunus_persica	Prupe.7G142300_v2.0.a1
pyrus_communis	pycom02g12740 pycom15g23840
rosa_chinensis	RchiOBHm_Chr2g0103771
rosa_laevigata	RLG00000017258
rosa_multiflora	Rmu_co8256557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139410
rosa_rugosa	Rorug02G0117200
rosa_samantha	Rh2AG166200 Rh2BG173400 Rh2CG172100 Rh2DG171600
rosa_wichuraiana	Rw0G006920 Rw2G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	613
AccBSI	CCGCTC	1 cut(s)	749
AciI	CCGC	3 cut(s)	340, 664, 747
AclWI	GGATC	2 cut(s)	399, 412
AcsI	RAATTY	2 cut(s)	376, 388
AcvI	CACGTG	1 cut(s)	466
AfaI	GTAC	5 cut(s)	25, 108, 160, 497, 739
AfiI	CCNNNNNNNGG	3 cut(s)	152, 565, 845
AgsI	TTSAA	2 cut(s)	165, 353
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	2 cut(s)	190, 208
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	9 cut(s)	10, 47, 61, 367, 518, 650, 695, 707, 903
AluI	AGCT	9 cut(s)	10, 47, 61, 367, 518, 650, 695, 707, 903
AlwI	GGATC	2 cut(s)	399, 412
AlwNI	CAGNNNCTG	1 cut(s)	61
AoxI	GGCC	1 cut(s)	819
ApeKI	GCWGC	9 cut(s)	52, 176, 364, 470, 515, 569, 572, 692, 911
ApoI	RAATTY	2 cut(s)	376, 388
ArsI	GACNNNNNNTTYG	3 cut(s)	422, 454, 926
AspA2I	CCTAGG	1 cut(s)	541
AspS9I	GGNCC	2 cut(s)	34, 878
AsuHPI	GGTGA	1 cut(s)	344
AsuNHI	GCTAGC	1 cut(s)	646
AvaII	GGWCC	2 cut(s)	34, 878
AvrII	CCTAGG	1 cut(s)	541
BamHI	GGATCC	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	466
BbvI	GCAGC	9 cut(s)	39, 188, 376, 457, 527, 556, 559, 704, 898
BccI	CCATC	6 cut(s)	58, 292, 395, 542, 628, 760
BceAI	ACGGC	1 cut(s)	689
BciT130I	CCWGG	2 cut(s)	192, 210
BciVI	GTATCC	1 cut(s)	514
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	5 cut(s)	219, 542, 647, 900, 945
BfmI	CTRYAG	4 cut(s)	53, 174, 240, 690
BfuAI	ACCTGC	1 cut(s)	613
BfuI	GTATCC	1 cut(s)	514
BlnI	CCTAGG	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	192, 210
Bme18I	GGWCC	2 cut(s)	34, 878
BmgT120I	GGNCC	2 cut(s)	34, 878
BmiI	GGNNCC	3 cut(s)	189, 406, 677
BmrFI	CCNGG	2 cut(s)	192, 210
BmsI	GCATC	3 cut(s)	111, 595, 676
BmtI	GCTAGC	1 cut(s)	650
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	3 cut(s)	474, 651, 816
BsaAI	YACGTR	1 cut(s)	466
BsaJI	CCNNGG	6 cut(s)	30, 131, 275, 541, 765, 822
BsaWI	WCCGGW	1 cut(s)	875
BsaXI	ACNNNNNCTCC	2 cut(s)	787, 817
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 565, 845
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	192, 210
BseDI	CCNNGG	6 cut(s)	30, 131, 275, 541, 765, 822
BseGI	GGATG	3 cut(s)	284, 553, 586
BseLI	CCNNNNNNNGG	3 cut(s)	152, 565, 845
BseMII	CTCAG	2 cut(s)	665, 830
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	9 cut(s)	39, 188, 376, 457, 527, 556, 559, 704, 898
BshFI	GGCC	1 cut(s)	821
BsiSI	CCGG	1 cut(s)	876
BslI	CCNNNNNNNGG	3 cut(s)	152, 565, 845
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	1 cut(s)	821
Bsp143I	GATC	1 cut(s)	404
Bsp19I	CCATGG	2 cut(s)	30, 765
BspACI	CCGC	3 cut(s)	340, 664, 747
BspANI	GGCC	1 cut(s)	821
BspCNI	CTCAG	2 cut(s)	664, 829
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	3 cut(s)	189, 406, 677
BspMAI	CTGCAG	3 cut(s)	57, 178, 694
BspMI	ACCTGC	1 cut(s)	613
BspOI	GCTAGC	1 cut(s)	650
BspPI	GGATC	2 cut(s)	399, 412
BsrBI	CCGCTC	1 cut(s)	749
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	6 cut(s)	30, 131, 275, 541, 765, 822
BssMI	GATC	1 cut(s)	404
BssT1I	CCWWGG	6 cut(s)	30, 131, 275, 541, 765, 822
Bst2UI	CCWGG	2 cut(s)	192, 210
Bst4CI	ACNGT	2 cut(s)	73, 95
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	4 cut(s)	474, 576, 651, 816
BstDSI	CCRYGG	2 cut(s)	30, 765
BstENI	CCTNNNNNAGG	1 cut(s)	843
BstF5I	GGATG	3 cut(s)	284, 553, 586
BstKTI	GATC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 185, 194, 524, 673
BstNI	CCWGG	2 cut(s)	192, 210
BstSCI	CCNGG	2 cut(s)	190, 208
BstSFI	CTRYAG	4 cut(s)	53, 174, 240, 690
BstV1I	GCAGC	9 cut(s)	39, 188, 376, 457, 527, 556, 559, 704, 898
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	821
BtgI	CCRYGG	2 cut(s)	30, 765
BtsCI	GGATG	3 cut(s)	284, 553, 586
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	100, 171
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	1 cut(s)	648
CaiI	CAGNNNCTG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	34, 878
CseI	GACGC	2 cut(s)	168, 524
Csp6I	GTAC	5 cut(s)	24, 107, 159, 496, 738
CviAII	CATG	6 cut(s)	31, 118, 436, 449, 508, 766
CviQI	GTAC	5 cut(s)	24, 107, 159, 496, 738
DdeI	CTNAG	4 cut(s)	474, 576, 651, 816
DpnI	GATC	1 cut(s)	406
DpnII	GATC	1 cut(s)	404
DraI	TTTAAA	1 cut(s)	375
Eco130I	CCWWGG	6 cut(s)	30, 131, 275, 541, 765, 822
Eco147I	AGGCCT	1 cut(s)	821
Eco47I	GGWCC	2 cut(s)	34, 878
Eco72I	CACGTG	1 cut(s)	466
EcoNI	CCTNNNNNAGG	1 cut(s)	843
EcoRI	GAATTC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	190, 208
EcoT14I	CCWWGG	6 cut(s)	30, 131, 275, 541, 765, 822
ErhI	CCWWGG	6 cut(s)	30, 131, 275, 541, 765, 822
FaeI	CATG	6 cut(s)	34, 121, 439, 452, 511, 769
FaiI	YATR	8 cut(s)	32, 119, 242, 264, 437, 450, 509, 767
FatI	CATG	6 cut(s)	30, 117, 435, 448, 507, 765
FokI	GGATG	3 cut(s)	271, 560, 573
FspBI	CTAG	5 cut(s)	219, 542, 647, 900, 945
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	821
HapII	CCGG	1 cut(s)	876
HgaI	GACGC	2 cut(s)	168, 524
Hin1II	CATG	6 cut(s)	34, 121, 439, 452, 511, 769
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	876
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	3 cut(s)	224, 463, 740
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	2 cut(s)	118, 653
Hpy8I	GTNNAC	3 cut(s)	224, 463, 740
Hpy99I	CGWCG	2 cut(s)	540, 954
HpyAV	CCTTC	2 cut(s)	301, 753
HpyCH4III	ACNGT	2 cut(s)	73, 95
HpyCH4IV	ACGT	4 cut(s)	109, 127, 465, 952
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 185, 194, 524, 673
HpyF3I	CTNAG	4 cut(s)	474, 576, 651, 816
HpySE526I	ACGT	4 cut(s)	109, 127, 465, 952
Hsp92II	CATG	6 cut(s)	34, 121, 439, 452, 511, 769
Kzo9I	GATC	1 cut(s)	404
LmnI	GCTCC	8 cut(s)	7, 58, 193, 194, 372, 681, 754, 808
Lsp1109I	GCAGC	9 cut(s)	39, 188, 376, 457, 527, 556, 559, 704, 898
LweI	GCATC	3 cut(s)	111, 595, 676
MaeI	CTAG	5 cut(s)	219, 542, 647, 900, 945
MaeII	ACGT	4 cut(s)	109, 127, 465, 952
MaeIII	GTNAC	2 cut(s)	84, 180
MalI	GATC	1 cut(s)	406
MbiI	CCGCTC	1 cut(s)	749
MboI	GATC	1 cut(s)	404
MboII	GAAGA	6 cut(s)	131, 365, 384, 747, 750, 753
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	404
MluCI	AATT	5 cut(s)	18, 306, 376, 388, 609
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	5 cut(s)	91, 149, 378, 418, 839
MseI	TTAA	1 cut(s)	374
MspI	CCGG	1 cut(s)	876
MspR9I	CCNGG	2 cut(s)	192, 210
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	2 cut(s)	192, 210
MwoI	GCNNNNNNNGC	5 cut(s)	58, 185, 194, 524, 673
NcoI	CCATGG	2 cut(s)	30, 765
NdeII	GATC	1 cut(s)	404
NheI	GCTAGC	1 cut(s)	646
NlaIII	CATG	6 cut(s)	34, 121, 439, 452, 511, 769
NlaIV	GGNNCC	3 cut(s)	189, 406, 677
NmuCI	GTSAC	1 cut(s)	180
PagI	TCATGA	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	821
PcsI	WCGNNNNNNNCGW	1 cut(s)	946
PctI	GAATGC	1 cut(s)	722
PfoI	TCCNGGA	1 cut(s)	190
PmaCI	CACGTG	1 cut(s)	466
PmlI	CACGTG	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	190, 208
PspCI	CACGTG	1 cut(s)	466
PspGI	CCWGG	2 cut(s)	190, 208
PspN4I	GGNNCC	3 cut(s)	189, 406, 677
PspPI	GGNCC	2 cut(s)	34, 878
PstI	CTGCAG	3 cut(s)	57, 178, 694
PstNI	CAGNNNCTG	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	404
RsaI	GTAC	5 cut(s)	25, 108, 160, 497, 739
RsaNI	GTAC	5 cut(s)	24, 107, 159, 496, 738
SaqAI	TTAA	1 cut(s)	374
Sau3AI	GATC	1 cut(s)	404
Sau96I	GGNCC	2 cut(s)	34, 878
ScrFI	CCNGG	2 cut(s)	192, 210
SfaNI	GCATC	3 cut(s)	111, 595, 676
SfcI	CTRYAG	4 cut(s)	53, 174, 240, 690
SinI	GGWCC	2 cut(s)	34, 878
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	5 cut(s)	18, 306, 376, 388, 609
SseBI	AGGCCT	1 cut(s)	821
SsiI	CCGC	3 cut(s)	340, 664, 747
SspMI	CTAG	5 cut(s)	219, 542, 647, 900, 945
StuI	AGGCCT	1 cut(s)	821
StyD4I	CCNGG	2 cut(s)	190, 208
StyI	CCWWGG	6 cut(s)	30, 131, 275, 541, 765, 822
TaaI	ACNGT	2 cut(s)	73, 95
TaiI	ACGT	4 cut(s)	112, 130, 468, 955
TaqII	GACCGA	2 cut(s)	51, 930
TasI	AATT	5 cut(s)	18, 306, 376, 388, 609
TatI	WGTACW	2 cut(s)	495, 737
TauI	GCSGC	2 cut(s)	342, 667
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	2 cut(s)	100, 178
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	9 cut(s)	52, 176, 364, 470, 515, 569, 572, 692, 911
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	6 cut(s)	106, 479, 524, 699, 762, 840
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	100, 178
VpaK11BI	GGWCC	2 cut(s)	34, 878
XagI	CCTNNNNNAGG	1 cut(s)	843
XapI	RAATTY	2 cut(s)	376, 388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627
XmaJI	CCTAGG	1 cut(s)	541
XspI	CTAG	5 cut(s)	219, 542, 647, 900, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.