Rh2AG166200

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
15611621 .. 15616399
4779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG166200.1

Sequence Viewer

Length: 1578 bp
ATGTCGTTCTCCCTCTTCTCATCGGCGCAACCGCAGCAAACGCCGCAGCCACAATCCTCCCTCTTCCAAACCCCAAGCCTCTTCCAAACCCAACAATCCCCAAACCCCTTTCAGCAAACCCAGCAATCCCCAAACCCCTTCCAGCAATCCCCGAGCCTTTTCCAGCAAACTCAGCAGTCCCCGAGTCCTTTTCAGCAAAGCACTTCCTTGTTCTCGCAACCCCAGCAGCAGCAGCAACAGTCGCCGTTTCAGCCGCAGCAGTTTCAGTCTCAGTCGCCGCTTCAATTTCAGCCGCCGCCGCAGCAGCAACAGCAGCAGCAGTTGTTTTTGTTTACTAATGACAAGACTCCGGCGAGTTACGGCACCAAGTGGGCCGATTTACACCCCGATTCGCAGAAGATTCTGCTCCAGATTGAGGAGCGCATACTGGGGTTCAGGGATGAGAGCCAAAGGCTGGATCAGTCTAGTCGTCTCTACGATTCTTCAGTTTCCAATGATGGGTTTGAGCAGGATGCAAGTCGTATCATTCAGGAGCTTGGGGGAATTGGTACTGCCATGGACCGACAGAAAGCTCTGCTGCAGGAGCTGATGGCTACCGTGAAAGAGATGTTACGGAACAGTGAGGTTGCTGTACGTTCTTTCATGATGCTACGTCCAAGGTTTCTTCGTCCAAATGCAGGAGGTACTTCAAATGGCACTGCAGCGTCACAGGCTCCTGGAGCAACAGAAACACCAGGCTCAACTAGTCAACCAACAACTAGTTCTATAGTTCCAGTTTTTGACTTCTATAATGGAGTTCCAAGGAAACCATCCCCCTTCTTACAGCACACAATTGCAAGATTTGAGAAGTATCTTGGTGAGTGCCGCCAATGGATTGAAGAAATAGAGCAGCTCCTTTTAAATTCAGAGAGGAACTCTTCCAATGATGGATCCTCATTGTTGCAATCTCTCCCAAAAGTCATGTCAAATGTGCATGACTTTTTTGTTCACGTGGCTGCTAAGGTGGAGAGTATTCATCAGTACATTGTATCCATGAAAGCAGCTTATCTTGCTAACCAGCGTCGCCTAGGGGATGGGAATGACCCATTTCTTGAGGCTGATAGGCGGGAAACAGCAAGGCAAGAAGCTGCTGCTAAGAGAGTGCATCCAACTTTGCATTTACCTGCAATTTCACAACCATCAACACAAGTGGCTGGATTGTTGGCTAGCTCAGGAAGTCAGGCGTCATCAACAGCTCCACAGACATCTGCAGCTACTACAACAGCTTCATCTGGGAGTGCATTCTCACTTTTCAGTACACCTTCCGCTCCATCTTCTTCTTCCATGGCTTCATCTTTGTTTGCAACACCAACCACTCCTGCTCCAGTATCTTCTCTTTTTGGACCATCATCTGCTACGCCCCAGACATCAACTGCTTCTCAGCTAGGCAATACTGCTCAGGCCTTGGGTTCTACTACTCCTGTGGGAGGTTCATTATTTTCTACTCCATTTGCTTCCGGTCCTGCAACATCATTTGGGTCTAGCTTTGGGGCTGCAACGAAATCAACAAAGCCAAAAGCTCGGTCTGGCCGACGTTAG

Protein Analysis

525

Amino Acids

56.8

Weight (kDa)

9.14

Isoelectric Point (pI)

80.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013560)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1171
AccB1I GGYRCC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 454
AccBSI CCGCTC 1 cut(s) 1307
AclWI GGATC 3 cut(s) 465, 924, 937
AcoI YGGCCR 1 cut(s) 1567
AcsI RAATTY 1 cut(s) 901
AcuI CTGAAG 1 cut(s) 468
AcvI CACGTG 1 cut(s) 991
AcyI GRCGYC 1 cut(s) 1223
AdeI CACNNNGTG 1 cut(s) 369
AfaI GTAC 5 cut(s) 550, 633, 685, 1022, 1297
AfiI CCNNNNNNNGG 5 cut(s) 415, 454, 498, 677, 1466
AgsI TTSAA 3 cut(s) 284, 690, 878
AhlI ACTAGT 2 cut(s) 743, 758
AjnI CCWGG 2 cut(s) 715, 733
AjuI GAANNNNNNNTTGG 2 cut(s) 745, 777
Alw26I GTCTC 2 cut(s) 273, 476
AlwI GGATC 3 cut(s) 465, 924, 937
AlwNI CAGNNNCTG 1 cut(s) 586
Ama87I CYCGRG 2 cut(s) 151, 181
AoxI GGCC 3 cut(s) 372, 1440, 1567
ApoI RAATTY 1 cut(s) 901
ArsI GACNNNNNNTTYG 3 cut(s) 947, 979, 1547
AspA2I CCTAGG 1 cut(s) 1066
AspLEI GCGC 2 cut(s) 28, 423
AspS9I GGNCC 4 cut(s) 372, 559, 1382, 1499
AsuHPI GGTGA 1 cut(s) 869
AsuNHI GCTAGC 1 cut(s) 1205
AvaI CYCGRG 2 cut(s) 151, 181
AvaII GGWCC 3 cut(s) 559, 1382, 1499
AvrII CCTAGG 1 cut(s) 1066
BamHI GGATCC 1 cut(s) 929
BanI GGYRCC 1 cut(s) 362
BbrPI CACGTG 1 cut(s) 991
BccI CCATC 8 cut(s) 491, 583, 817, 920, 1067, 1186, 1318, 1393
BceAI ACGGC 2 cut(s) 229, 376
BciT130I CCWGG 2 cut(s) 717, 735
BciVI GTATCC 1 cut(s) 1039
BcoDI GTCTC 2 cut(s) 273, 476
BcuI ACTAGT 2 cut(s) 743, 758
BfaI CTAG 7 cut(s) 465, 744, 759, 1067, 1206, 1424, 1521
BfmI CTRYAG 4 cut(s) 578, 699, 765, 1248
BfuAI ACCTGC 1 cut(s) 1171
BfuI GTATCC 1 cut(s) 1039
BlnI CCTAGG 1 cut(s) 1066
Bme1390I CCNGG 2 cut(s) 717, 735
Bme18I GGWCC 3 cut(s) 559, 1382, 1499
BmeT110I CYCGRG 2 cut(s) 151, 181
BmgT120I GGNCC 4 cut(s) 372, 559, 1382, 1499
BmiI GGNNCC 3 cut(s) 364, 714, 931
BmrFI CCNGG 2 cut(s) 717, 735
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 3 cut(s) 502, 636, 1153
BmtI GCTAGC 1 cut(s) 1209
BmuI ACTGGG 1 cut(s) 437
BplI GAGNNNNNCTC 2 cut(s) 899, 931
BpmI CTGGAG 3 cut(s) 392, 738, 1347
Bpu10I CCTNAGC 3 cut(s) 999, 1210, 1437
BpuEI CTTGAG 1 cut(s) 1112
BsaAI YACGTR 1 cut(s) 991
BsaHI GRCGYC 1 cut(s) 1223
BsaJI CCNNGG 6 cut(s) 555, 656, 800, 1066, 1323, 1443
BsaWI WCCGGW 1 cut(s) 1496
BsaXI ACNNNNNCTCC 2 cut(s) 1345, 1375
Bsc4I CCNNNNNNNGG 5 cut(s) 415, 454, 498, 677, 1466
Bse1I ACTGG 3 cut(s) 432, 773, 1364
BseBI CCWGG 2 cut(s) 717, 735
BseDI CCNNGG 6 cut(s) 555, 656, 800, 1066, 1323, 1443
BseGI GGATG 5 cut(s) 445, 517, 809, 1078, 1144
BseLI CCNNNNNNNGG 5 cut(s) 415, 454, 498, 677, 1466
BseMII CTCAG 5 cut(s) 185, 284, 1224, 1433, 1451
BseNI ACTGG 3 cut(s) 432, 773, 1364
BseRI GAGGAG 1 cut(s) 431
BseYI CCCAGC 2 cut(s) 120, 222
BshFI GGCC 3 cut(s) 374, 1442, 1569
BshNI GGYRCC 1 cut(s) 362
BsiHKCI CYCGRG 2 cut(s) 151, 181
BsiSI CCGG 2 cut(s) 350, 1497
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 5 cut(s) 415, 454, 498, 677, 1466
BsmAI GTCTC 2 cut(s) 273, 476
BsmBI CGTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 1280
BsnI GGCC 3 cut(s) 374, 1442, 1569
BsoBI CYCGRG 2 cut(s) 151, 181
Bsp143I GATC 2 cut(s) 457, 929
Bsp19I CCATGG 2 cut(s) 555, 1323
BspANI GGCC 3 cut(s) 374, 1442, 1569
BspCNI CTCAG 5 cut(s) 184, 283, 1223, 1432, 1450
BspHI TCATGA 1 cut(s) 642
BspLI GGNNCC 3 cut(s) 364, 714, 931
BspMAI CTGCAG 3 cut(s) 582, 703, 1252
BspMI ACCTGC 1 cut(s) 1171
BspOI GCTAGC 1 cut(s) 1209
BspPI GGATC 3 cut(s) 465, 924, 937
BspT107I GGYRCC 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 1307
BsrI ACTGG 3 cut(s) 432, 773, 1364
BssECI CCNNGG 6 cut(s) 555, 656, 800, 1066, 1323, 1443
BssMI GATC 2 cut(s) 457, 929
BssNI GRCGYC 1 cut(s) 1223
BssT1I CCWWGG 6 cut(s) 555, 656, 800, 1066, 1323, 1443
Bst2UI CCWGG 2 cut(s) 717, 735
Bst4CI ACNGT 3 cut(s) 240, 598, 620
Bst6I CTCTTC 4 cut(s) 20, 68, 86, 922
BstACI GRCGYC 1 cut(s) 1223
BstBAI YACGTR 1 cut(s) 991
BstC8I GCNNGC 1 cut(s) 1207
BstDEI CTNAG 7 cut(s) 171, 270, 999, 1134, 1210, 1419, 1437
BstDSI CCRYGG 2 cut(s) 555, 1323
BstENI CCTNNNNNAGG 1 cut(s) 1464
BstF5I GGATG 5 cut(s) 445, 517, 809, 1078, 1144
BstHHI GCGC 2 cut(s) 28, 423
BstKTI GATC 2 cut(s) 460, 932
BstMAI GTCTC 2 cut(s) 273, 476
BstMBI GATC 2 cut(s) 457, 929
BstNI CCWGG 2 cut(s) 717, 735
BstSCI CCNGG 2 cut(s) 715, 733
BstSFI CTRYAG 4 cut(s) 578, 699, 765, 1248
BstX2I RGATCY 1 cut(s) 929
BstYI RGATCY 1 cut(s) 929
BsuI GTATCC 1 cut(s) 1039
BsuRI GGCC 3 cut(s) 374, 1442, 1569
BtgI CCRYGG 2 cut(s) 555, 1323
BtsCI GGATG 5 cut(s) 445, 517, 809, 1078, 1144
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 2 cut(s) 625, 696
BveI ACCTGC 1 cut(s) 1171
Cac8I GCNNGC 1 cut(s) 1207
CaiI CAGNNNCTG 1 cut(s) 586
CciI TCATGA 1 cut(s) 642
CfoI GCGC 2 cut(s) 28, 423
Cfr13I GGNCC 4 cut(s) 372, 559, 1382, 1499
CseI GACGC 3 cut(s) 693, 1049, 1212
Csp6I GTAC 5 cut(s) 549, 632, 684, 1021, 1296
CspCI CAANNNNNGTGG 2 cut(s) 1170, 1205
CviAII CATG 6 cut(s) 556, 643, 961, 974, 1033, 1324
CviQI GTAC 5 cut(s) 549, 632, 684, 1021, 1296
DdeI CTNAG 7 cut(s) 171, 270, 999, 1134, 1210, 1419, 1437
DpnI GATC 2 cut(s) 459, 931
DpnII GATC 2 cut(s) 457, 929
DraI TTTAAA 1 cut(s) 900
DraIII CACNNNGTG 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 1567
Eam1104I CTCTTC 4 cut(s) 20, 68, 86, 922
EarI CTCTTC 4 cut(s) 20, 68, 86, 922
Eco130I CCWWGG 6 cut(s) 555, 656, 800, 1066, 1323, 1443
Eco147I AGGCCT 1 cut(s) 1442
Eco47I GGWCC 3 cut(s) 559, 1382, 1499
Eco57I CTGAAG 1 cut(s) 468
Eco72I CACGTG 1 cut(s) 991
Eco88I CYCGRG 2 cut(s) 151, 181
EcoNI CCTNNNNNAGG 1 cut(s) 1464
EcoRII CCWGG 2 cut(s) 715, 733
EcoT14I CCWWGG 6 cut(s) 555, 656, 800, 1066, 1323, 1443
ErhI CCWWGG 6 cut(s) 555, 656, 800, 1066, 1323, 1443
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 6 cut(s) 559, 646, 964, 977, 1036, 1327
FaiI YATR 9 cut(s) 425, 557, 644, 767, 789, 962, 975, 1034, 1325
FaqI GGGAC 1 cut(s) 163
FatI CATG 6 cut(s) 555, 642, 960, 973, 1032, 1323
FauI CCCGC 1 cut(s) 1098
FokI GGATG 5 cut(s) 452, 524, 796, 1085, 1131
FspBI CTAG 7 cut(s) 465, 744, 759, 1067, 1206, 1424, 1521
GlaI GCGC 2 cut(s) 27, 422
GsaI CCCAGC 2 cut(s) 124, 226
GsuI CTGGAG 3 cut(s) 392, 738, 1347
HaeIII GGCC 3 cut(s) 374, 1442, 1569
HapII CCGG 2 cut(s) 350, 1497
HgaI GACGC 3 cut(s) 693, 1049, 1212
HhaI GCGC 2 cut(s) 28, 423
Hin1I GRCGYC 1 cut(s) 1223
Hin1II CATG 6 cut(s) 559, 646, 964, 977, 1036, 1327
Hin6I GCGC 2 cut(s) 26, 421
HinP1I GCGC 2 cut(s) 26, 421
HincII GTYRAC 1 cut(s) 749
HindII GTYRAC 1 cut(s) 749
HinfI GANTC 5 cut(s) 184, 346, 389, 400, 479
HpaII CCGG 2 cut(s) 350, 1497
HphI GGTGA 1 cut(s) 869
Hpy166II GTNNAC 4 cut(s) 333, 749, 988, 1298
Hpy188I TCNGA 1 cut(s) 907
Hpy188III TCNNGA 5 cut(s) 409, 530, 643, 1091, 1212
Hpy8I GTNNAC 4 cut(s) 333, 749, 988, 1298
Hpy99I CGWCG 2 cut(s) 1065, 1575
HpyAV CCTTC 3 cut(s) 148, 826, 1311
HpyCH4III ACNGT 3 cut(s) 240, 598, 620
HpyCH4IV ACGT 4 cut(s) 634, 652, 990, 1573
HpyF3I CTNAG 7 cut(s) 171, 270, 999, 1134, 1210, 1419, 1437
HpySE526I ACGT 4 cut(s) 634, 652, 990, 1573
Hsp92I GRCGYC 1 cut(s) 1223
Hsp92II CATG 6 cut(s) 559, 646, 964, 977, 1036, 1327
HspAI GCGC 2 cut(s) 26, 421
Kzo9I GATC 2 cut(s) 457, 929
LweI GCATC 3 cut(s) 502, 636, 1153
MaeI CTAG 7 cut(s) 465, 744, 759, 1067, 1206, 1424, 1521
MaeII ACGT 4 cut(s) 634, 652, 990, 1573
MaeIII GTNAC 3 cut(s) 356, 609, 705
MalI GATC 2 cut(s) 459, 931
MbiI CCGCTC 1 cut(s) 1307
MboI GATC 2 cut(s) 457, 929
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 929
MluCI AATT 5 cut(s) 284, 543, 831, 901, 1167
MlyI GAGTC 2 cut(s) 193, 340
MmeI TCCRAC 1 cut(s) 1172
MseI TTAA 1 cut(s) 899
MspI CCGG 2 cut(s) 350, 1497
MspR9I CCNGG 2 cut(s) 717, 735
MunI CAATTG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 1280
MvaI CCWGG 2 cut(s) 717, 735
NcoI CCATGG 2 cut(s) 555, 1323
NdeII GATC 2 cut(s) 457, 929
NheI GCTAGC 1 cut(s) 1205
NlaIII CATG 6 cut(s) 559, 646, 964, 977, 1036, 1327
NlaIV GGNNCC 3 cut(s) 364, 714, 931
NmuCI GTSAC 1 cut(s) 705
PagI TCATGA 1 cut(s) 642
PceI AGGCCT 1 cut(s) 1442
PcsI WCGNNNNNNNCGW 1 cut(s) 1567
PctI GAATGC 1 cut(s) 1280
PfeI GAWTC 3 cut(s) 389, 400, 479
PflMI CCANNNNNTGG 1 cut(s) 454
PfoI TCCNGGA 1 cut(s) 715
PleI GAGTC 2 cut(s) 192, 340
PmaCI CACGTG 1 cut(s) 991
PmlI CACGTG 1 cut(s) 991
PpsI GAGTC 2 cut(s) 192, 340
Ppu21I YACGTR 1 cut(s) 991
Psp6I CCWGG 2 cut(s) 715, 733
PspCI CACGTG 1 cut(s) 991
PspFI CCCAGC 2 cut(s) 120, 222
PspGI CCWGG 2 cut(s) 715, 733
PspN4I GGNNCC 3 cut(s) 364, 714, 931
PspPI GGNCC 4 cut(s) 372, 559, 1382, 1499
PstI CTGCAG 3 cut(s) 582, 703, 1252
PstNI CAGNNNCTG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 929
RsaI GTAC 5 cut(s) 550, 633, 685, 1022, 1297
RsaNI GTAC 5 cut(s) 549, 632, 684, 1021, 1296
SaqAI TTAA 1 cut(s) 899
Sau3AI GATC 2 cut(s) 457, 929
Sau96I GGNCC 4 cut(s) 372, 559, 1382, 1499
SchI GAGTC 2 cut(s) 193, 340
ScrFI CCNGG 2 cut(s) 717, 735
SfaNI GCATC 3 cut(s) 502, 636, 1153
SfcI CTRYAG 4 cut(s) 578, 699, 765, 1248
SinI GGWCC 3 cut(s) 559, 1382, 1499
SmlI CTYRAG 1 cut(s) 1091
SmoI CTYRAG 1 cut(s) 1091
SpeI ACTAGT 2 cut(s) 743, 758
Sse9I AATT 5 cut(s) 284, 543, 831, 901, 1167
SseBI AGGCCT 1 cut(s) 1442
SspMI CTAG 7 cut(s) 465, 744, 759, 1067, 1206, 1424, 1521
StuI AGGCCT 1 cut(s) 1442
StyD4I CCNGG 2 cut(s) 715, 733
StyI CCWWGG 6 cut(s) 555, 656, 800, 1066, 1323, 1443
TaaI ACNGT 3 cut(s) 240, 598, 620
TaiI ACGT 4 cut(s) 637, 655, 993, 1576
TaqII GACCGA 2 cut(s) 576, 1551
TasI AATT 5 cut(s) 284, 543, 831, 901, 1167
TatI WGTACW 2 cut(s) 1020, 1295
TauI GCSGC 7 cut(s) 46, 256, 280, 295, 298, 301, 867
TfiI GAWTC 3 cut(s) 389, 400, 479
Tru1I TTAA 1 cut(s) 899
Tru9I TTAA 1 cut(s) 899
TscAI CASTG 2 cut(s) 625, 703
TseFI GTSAC 1 cut(s) 705
Tsp45I GTSAC 1 cut(s) 705
TspDTI ATGAA 6 cut(s) 631, 1004, 1049, 1257, 1320, 1461
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 2 cut(s) 625, 703
Van91I CCANNNNNTGG 1 cut(s) 454
VpaK11BI GGWCC 3 cut(s) 559, 1382, 1499
XagI CCTNNNNNAGG 1 cut(s) 1464
XapI RAATTY 1 cut(s) 901
XmaJI CCTAGG 1 cut(s) 1066
XspI CTAG 7 cut(s) 465, 744, 759, 1067, 1206, 1424, 1521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.