MD02G1161300.v1.1

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
13529137 .. 13534380
5244 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1161300.v1.1.491

Sequence Viewer

Length: 1548 bp
ATGGCGTTCACATCGTTATTCTCTACGCCGCAGCCACAACAGCAGCAGCAGCAGCAATCGCCGTTTCAAATTCAACAGCCCTCACAGCCCTTTCAGCAAAGCAACTCCTTCTTCTCCCAACAACCACCGCAGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACGCCGCTGTTTCAACAGCCGCAATTTCAGCAGCAGCAGCCGCTATTTCAACAGCCGCAATTTCAGCAGCAGCAGCAACAACCGCAGCAGCAGCAGCAACAGCAATTGTATTTGTTTACTAATGACAAGACTCCGGCGAGTTATGGTACCAAGTGGGCGGATCTCCATCCGGATTCCCAGAAAATTCTTCTGCAGATTGAGGAACGGATACTGGGGTATAGGGATGAAAGCCAGCGGCTGGATCAGTGTAGTCGTCTCTACGATTCCTCTGTTTCCAATGATGCTTTTGAGCATGACGCAAGTCGTATTCTACAGGAACTTGGGGGAATTGGTACTTCCATGGACCGACAGAAAGTTCTTTTGCAGGAGTTGATGGCTATTGTGAAAGACATGTTGCGGAACAGCGAGGTTGCTGTTCGTTCTTTTATGATTTTACGCCCAAGGTTTCTTCATCTGAATGCAGGAGGTACTTCAAATGCCACTGCCCCGTCACAAGCTCCTGGAGCGACACTACCACCAGGTTTAAGTAGTCAACCAACAACTAGTTCTATAGTGCCAGTTTTTGATTTCTACAACGGGATTCCAAGGAAACCGTCTCCGTTCCTACAGCAAACAGTAGCAAGATTTGAGAAGTATCTTGTTGAGTGTCGCCAGTGGATTGAGGAATTAGAGCAGCTGCTTCTAGACTCCGAGAGGAACTCAGCCAATGATAGATCCTCATTGTTGCAGTCTCTTCCAAAAGTCATGTCAAATGTGCATGATTTTTTCGTTCACGTGGCAGCTAAGGTGGAGAGTTTTCATCAGTATGTTGTGTCCATGAAAACAGCTTATCTTGTTAATGAGCGCCGCCAAGGGTATGTGAATGATCCATTTCTCGAGGCTGATCGGCGGGAAACAGCTAGGCAAGAAGCTGCTGCTAAGAGGGTGCATCCAACTTTACATTTACCTGCGACGTCGCAACCATCAACACAAGTTTCTGGATTGTTTGCTAGTTCAGGAACCCCTGGGACATCTACTGCCCCACAGACGTCTGCTGCAGCTACCATTACAGCTTCATCTGGGAGTGGACTTTTCAGTACCCCTTCTGCTTCATCTGCTCCAGTGTCTTCCTCTCTATTTGCTACACCACCCACTACGGGTCCTGCATCTTCTCTTTTTCCAACACCATTTTCTACGCCCCAGGCATCATTGTTTAGTTCTTCATCAGCTTTTGGACCTGCTTCAACTCCCTCTCTGTTTTCCAATCCTACTCCAGGCTTTGGTTCTACTCCTACTATTGGAAGTTCATTATTTACTTCAGGTAGTGCTGGATCAGGGCTGAATTCTAGCTTTACTTCAACGAAATCAGCAAAGCCGAAAAGTCGAACTGGCCGCCGTTAG

Protein Analysis

516

Amino Acids

56.61

Weight (kDa)

8.98

Isoelectric Point (pI)

72.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013560)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 1124, 1199
Acc36I ACCTGC 2 cut(s) 1123, 1393
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 314
AccB7I CCANNNNNTGG 2 cut(s) 406, 1427
AccIII TCCGGA 1 cut(s) 337
AclWI GGATC 5 cut(s) 336, 417, 876, 1028, 1486
AcoI YGGCCR 1 cut(s) 1537
AcsI RAATTY 3 cut(s) 69, 351, 1489
AcuI CTGAAG 1 cut(s) 1449
AcvI CACGTG 1 cut(s) 943
AcyI GRCGYC 3 cut(s) 170, 1121, 1196
AfaI GTAC 4 cut(s) 316, 502, 637, 1246
AfiI CCNNNNNNNGG 5 cut(s) 406, 1304, 1421, 1427, 1445
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 7 cut(s) 68, 74, 182, 218, 642, 1392, 1506
AhlI ACTAGT 1 cut(s) 710
AjnI CCWGG 5 cut(s) 667, 685, 1171, 1347, 1420
AjuI GAANNNNNNNTTGG 4 cut(s) 697, 729, 1321, 1353
Alw26I GTCTC 3 cut(s) 428, 768, 903
AlwI GGATC 5 cut(s) 336, 417, 876, 1028, 1486
AlwNI CAGNNNCTG 1 cut(s) 406
Ama87I CYCGRG 1 cut(s) 1043
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 1 cut(s) 1537
ApoI RAATTY 3 cut(s) 69, 351, 1489
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
Asp718I GGTACC 1 cut(s) 314
AspLEI GCGC 1 cut(s) 1014
AspS9I GGNCC 3 cut(s) 511, 1307, 1382
AvaI CYCGRG 1 cut(s) 1043
AvaII GGWCC 3 cut(s) 511, 1307, 1382
BaeI ACNNNNGTAYC 2 cut(s) 368, 401
BanI GGYRCC 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 943
BbsI GAAGAC 1 cut(s) 1266
BccI CCATC 3 cut(s) 342, 535, 1138
BceAI ACGGC 2 cut(s) 46, 1527
BciT130I CCWGG 5 cut(s) 669, 687, 1173, 1349, 1422
BciVI GTATCC 1 cut(s) 369
BcoDI GTCTC 3 cut(s) 428, 768, 903
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 5 cut(s) 711, 851, 1068, 1158, 1494
BfmI CTRYAG 6 cut(s) 134, 359, 479, 717, 773, 1203
BfoI RGCGCY 1 cut(s) 1015
BfuAI ACCTGC 2 cut(s) 1123, 1393
BfuI GTATCC 1 cut(s) 369
Bme1390I CCNGG 5 cut(s) 669, 687, 1173, 1349, 1422
Bme18I GGWCC 3 cut(s) 511, 1307, 1382
BmeT110I CYCGRG 1 cut(s) 1043
BmgT120I GGNCC 3 cut(s) 511, 1307, 1382
BmiI GGNNCC 3 cut(s) 316, 1168, 1308
BmrFI CCNGG 5 cut(s) 669, 687, 1173, 1349, 1422
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 4 cut(s) 439, 1105, 1322, 1361
BmuI ACTGGG 1 cut(s) 389
BoxI GACNNNNGTC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 1266
BplI GAGNNNNNCTC 2 cut(s) 851, 883
BpmI CTGGAG 3 cut(s) 690, 1251, 1404
Bpu10I CCTNAGC 1 cut(s) 951
BsaAI YACGTR 1 cut(s) 943
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 3 cut(s) 170, 1121, 1196
BsaJI CCNNGG 7 cut(s) 507, 608, 752, 1018, 1171, 1172, 1347
BsaWI WCCGGW 1 cut(s) 337
Bsc4I CCNNNNNNNGG 5 cut(s) 406, 1304, 1421, 1427, 1445
Bse1I ACTGG 5 cut(s) 384, 725, 820, 1268, 1540
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 5 cut(s) 669, 687, 1173, 1349, 1422
BseDI CCNNGG 7 cut(s) 507, 608, 752, 1018, 1171, 1172, 1347
BseGI GGATG 3 cut(s) 334, 397, 1096
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 5 cut(s) 406, 1304, 1421, 1427, 1445
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 5 cut(s) 384, 725, 820, 1268, 1540
BshFI GGCC 1 cut(s) 1539
BshNI GGYRCC 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 1043
BsiSI CCGG 2 cut(s) 302, 338
BslFI GGGAC 1 cut(s) 1189
BslI CCNNNNNNNGG 5 cut(s) 406, 1304, 1421, 1427, 1445
BsmAI GTCTC 3 cut(s) 428, 768, 903
BsmBI CGTCTC 2 cut(s) 428, 768
BsmFI GGGAC 1 cut(s) 1189
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 1 cut(s) 1539
BsoBI CYCGRG 1 cut(s) 1043
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 6 cut(s) 328, 409, 881, 1033, 1051, 1478
Bsp19I CCATGG 1 cut(s) 507
BspANI GGCC 1 cut(s) 1539
BspCNI CTCAG 1 cut(s) 881
BspEI TCCGGA 1 cut(s) 337
BspLI GGNNCC 3 cut(s) 316, 1168, 1308
BspMAI CTGCAG 3 cut(s) 138, 363, 1207
BspMI ACCTGC 2 cut(s) 1123, 1393
BspPI GGATC 5 cut(s) 336, 417, 876, 1028, 1486
BspT107I GGYRCC 1 cut(s) 314
BsrI ACTGG 5 cut(s) 384, 725, 820, 1268, 1540
BssECI CCNNGG 7 cut(s) 507, 608, 752, 1018, 1171, 1172, 1347
BssMI GATC 6 cut(s) 328, 409, 881, 1033, 1051, 1478
BssNI GRCGYC 3 cut(s) 170, 1121, 1196
BssT1I CCWWGG 4 cut(s) 507, 608, 752, 1018
Bst2UI CCWGG 5 cut(s) 669, 687, 1173, 1349, 1422
Bst4CI ACNGT 2 cut(s) 762, 784
Bst6I CTCTTC 1 cut(s) 906
BstACI GRCGYC 3 cut(s) 170, 1121, 1196
BstBAI YACGTR 1 cut(s) 943
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 3 cut(s) 868, 951, 1086
BstDSI CCRYGG 1 cut(s) 507
BstENI CCTNNNNNAGG 1 cut(s) 1419
BstF5I GGATG 3 cut(s) 334, 397, 1096
BstH2I RGCGCY 1 cut(s) 1015
BstHHI GCGC 1 cut(s) 1014
BstKTI GATC 6 cut(s) 331, 412, 884, 1036, 1054, 1481
BstMAI GTCTC 3 cut(s) 428, 768, 903
BstMBI GATC 6 cut(s) 328, 409, 881, 1033, 1051, 1478
BstNI CCWGG 5 cut(s) 669, 687, 1173, 1349, 1422
BstNSI RCATGY 1 cut(s) 562
BstPAI GACNNNNGTC 1 cut(s) 468
BstSCI CCNGG 5 cut(s) 667, 685, 1171, 1347, 1420
BstSFI CTRYAG 6 cut(s) 134, 359, 479, 717, 773, 1203
BstV2I GAAGAC 1 cut(s) 1266
BstX2I RGATCY 2 cut(s) 328, 881
BstYI RGATCY 2 cut(s) 328, 881
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 1 cut(s) 1539
BtgI CCRYGG 1 cut(s) 507
BtsCI GGATG 3 cut(s) 334, 397, 1096
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 4 cut(s) 419, 648, 827, 1275
BveI ACCTGC 2 cut(s) 1123, 1393
Cac8I GCNNGC 1 cut(s) 401
CaiI CAGNNNCTG 1 cut(s) 406
CfoI GCGC 1 cut(s) 1014
Cfr13I GGNCC 3 cut(s) 511, 1307, 1382
CseI GACGC 2 cut(s) 178, 473
CsiI ACCWGGT 1 cut(s) 685
Csp6I GTAC 4 cut(s) 315, 501, 636, 1245
CviAII CATG 6 cut(s) 461, 508, 559, 913, 926, 985
CviQI GTAC 4 cut(s) 315, 501, 636, 1245
DdeI CTNAG 3 cut(s) 868, 951, 1086
DpnI GATC 6 cut(s) 330, 411, 883, 1035, 1053, 1480
DpnII GATC 6 cut(s) 328, 409, 881, 1033, 1051, 1478
EaeI YGGCCR 1 cut(s) 1537
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 4 cut(s) 507, 608, 752, 1018
Eco47I GGWCC 3 cut(s) 511, 1307, 1382
Eco57I CTGAAG 1 cut(s) 1449
Eco72I CACGTG 1 cut(s) 943
Eco88I CYCGRG 1 cut(s) 1043
EcoNI CCTNNNNNAGG 1 cut(s) 1419
EcoO109I RGGNCCY 1 cut(s) 1307
EcoRI GAATTC 1 cut(s) 1489
EcoRII CCWGG 5 cut(s) 667, 685, 1171, 1347, 1420
EcoT14I CCWWGG 4 cut(s) 507, 608, 752, 1018
ErhI CCWWGG 4 cut(s) 507, 608, 752, 1018
Esp3I CGTCTC 2 cut(s) 428, 768
FaeI CATG 6 cut(s) 464, 511, 562, 916, 929, 988
FaqI GGGAC 1 cut(s) 1189
FatI CATG 6 cut(s) 460, 507, 558, 912, 925, 984
FauI CCCGC 1 cut(s) 1050
FokI GGATG 3 cut(s) 321, 404, 1083
FspBI CTAG 5 cut(s) 711, 851, 1068, 1158, 1494
GlaI GCGC 1 cut(s) 1013
GsuI CTGGAG 3 cut(s) 690, 1251, 1404
HaeII RGCGCY 1 cut(s) 1015
HaeIII GGCC 1 cut(s) 1539
HapII CCGG 2 cut(s) 302, 338
HgaI GACGC 2 cut(s) 178, 473
HhaI GCGC 1 cut(s) 1014
Hin1I GRCGYC 3 cut(s) 170, 1121, 1196
Hin1II CATG 6 cut(s) 464, 511, 562, 916, 929, 988
Hin6I GCGC 1 cut(s) 1012
HinP1I GCGC 1 cut(s) 1012
HincII GTYRAC 1 cut(s) 701
HindII GTYRAC 1 cut(s) 701
HinfI GANTC 5 cut(s) 298, 341, 431, 748, 854
HpaII CCGG 2 cut(s) 302, 338
Hpy166II GTNNAC 5 cut(s) 9, 285, 701, 940, 1235
Hpy188I TCNGA 2 cut(s) 624, 859
Hpy188III TCNNGA 5 cut(s) 338, 851, 1043, 1146, 1164
Hpy8I GTNNAC 5 cut(s) 9, 285, 701, 940, 1235
Hpy99I CGWCG 2 cut(s) 1123, 1126
HpyAV CCTTC 2 cut(s) 118, 1260
HpyCH4III ACNGT 2 cut(s) 762, 784
HpyCH4IV ACGT 3 cut(s) 942, 1121, 1196
HpyCH4V TGCA 9 cut(s) 136, 361, 532, 629, 895, 925, 1096, 1205, 1313
HpyF3I CTNAG 3 cut(s) 868, 951, 1086
HpySE526I ACGT 3 cut(s) 942, 1121, 1196
Hsp92I GRCGYC 3 cut(s) 170, 1121, 1196
Hsp92II CATG 6 cut(s) 464, 511, 562, 916, 929, 988
HspAI GCGC 1 cut(s) 1012
Kpn2I TCCGGA 1 cut(s) 337
KpnI GGTACC 1 cut(s) 318
Kzo9I GATC 6 cut(s) 328, 409, 881, 1033, 1051, 1478
LmnI GCTCC 3 cut(s) 670, 671, 1270
LweI GCATC 4 cut(s) 439, 1105, 1322, 1361
MabI ACCWGGT 1 cut(s) 685
MaeI CTAG 5 cut(s) 711, 851, 1068, 1158, 1494
MaeII ACGT 3 cut(s) 942, 1121, 1196
MaeIII GTNAC 1 cut(s) 657
MalI GATC 6 cut(s) 330, 411, 883, 1035, 1053, 1480
MboI GATC 6 cut(s) 328, 409, 881, 1033, 1051, 1478
MboII GAAGA 7 cut(s) 103, 347, 608, 893, 1266, 1308, 1359
MfeI CAATTG 1 cut(s) 272
MflI RGATCY 2 cut(s) 328, 881
MluCI AATT 8 cut(s) 69, 191, 227, 272, 351, 495, 833, 1489
MlyI GAGTC 2 cut(s) 292, 848
MmeI TCCRAC 2 cut(s) 1124, 1352
MroI TCCGGA 1 cut(s) 337
MseI TTAA 2 cut(s) 692, 1005
MslI CAYNNNNRTG 2 cut(s) 624, 972
MspA1I CMGCKG 4 cut(s) 133, 175, 403, 844
MspI CCGG 2 cut(s) 302, 338
MspR9I CCNGG 5 cut(s) 669, 687, 1173, 1349, 1422
MunI CAATTG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 5 cut(s) 669, 687, 1173, 1349, 1422
NcoI CCATGG 1 cut(s) 507
NdeII GATC 6 cut(s) 328, 409, 881, 1033, 1051, 1478
NlaIII CATG 6 cut(s) 464, 511, 562, 916, 929, 988
NlaIV GGNNCC 3 cut(s) 316, 1168, 1308
NmuCI GTSAC 1 cut(s) 657
NspI RCATGY 1 cut(s) 562
PaeR7I CTCGAG 1 cut(s) 1043
PasI CCCWGGG 1 cut(s) 1172
PciI ACATGT 1 cut(s) 558
PctI GAATGC 1 cut(s) 631
PfeI GAWTC 3 cut(s) 341, 431, 748
PflMI CCANNNNNTGG 2 cut(s) 406, 1427
PfoI TCCNGGA 1 cut(s) 667
PleI GAGTC 2 cut(s) 292, 848
PmaCI CACGTG 1 cut(s) 943
PmlI CACGTG 1 cut(s) 943
PpsI GAGTC 2 cut(s) 292, 848
Ppu21I YACGTR 1 cut(s) 943
PpuMI RGGWCCY 1 cut(s) 1307
PscI ACATGT 1 cut(s) 558
PshAI GACNNNNGTC 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 1307
Psp6I CCWGG 5 cut(s) 667, 685, 1171, 1347, 1420
PspCI CACGTG 1 cut(s) 943
PspGI CCWGG 5 cut(s) 667, 685, 1171, 1347, 1420
PspN4I GGNNCC 3 cut(s) 316, 1168, 1308
PspPI GGNCC 3 cut(s) 511, 1307, 1382
PspPPI RGGWCCY 1 cut(s) 1307
PstI CTGCAG 3 cut(s) 138, 363, 1207
PstNI CAGNNNCTG 1 cut(s) 406
PsuI RGATCY 2 cut(s) 328, 881
PvuII CAGCTG 2 cut(s) 133, 844
RsaI GTAC 4 cut(s) 316, 502, 637, 1246
RsaNI GTAC 4 cut(s) 315, 501, 636, 1245
RseI CAYNNNNRTG 2 cut(s) 624, 972
SaqAI TTAA 2 cut(s) 692, 1005
Sau3AI GATC 6 cut(s) 328, 409, 881, 1033, 1051, 1478
Sau96I GGNCC 3 cut(s) 511, 1307, 1382
SchI GAGTC 2 cut(s) 292, 848
ScrFI CCNGG 5 cut(s) 669, 687, 1173, 1349, 1422
SexAI ACCWGGT 1 cut(s) 685
SfaNI GCATC 4 cut(s) 439, 1105, 1322, 1361
SfcI CTRYAG 6 cut(s) 134, 359, 479, 717, 773, 1203
Sfr274I CTCGAG 1 cut(s) 1043
SinI GGWCC 3 cut(s) 511, 1307, 1382
SlaI CTCGAG 1 cut(s) 1043
SmiMI CAYNNNNRTG 2 cut(s) 624, 972
SmlI CTYRAG 1 cut(s) 1043
SmoI CTYRAG 1 cut(s) 1043
SpeI ACTAGT 1 cut(s) 710
Sse9I AATT 8 cut(s) 69, 191, 227, 272, 351, 495, 833, 1489
SspMI CTAG 5 cut(s) 711, 851, 1068, 1158, 1494
StyD4I CCNGG 5 cut(s) 667, 685, 1171, 1347, 1420
StyI CCWWGG 4 cut(s) 507, 608, 752, 1018
TaaI ACNGT 2 cut(s) 762, 784
TaiI ACGT 3 cut(s) 945, 1124, 1199
TaqI TCGA 2 cut(s) 1044, 1531
TaqII GACCGA 1 cut(s) 528
TasI AATT 8 cut(s) 69, 191, 227, 272, 351, 495, 833, 1489
TauI GCSGC 8 cut(s) 31, 175, 190, 211, 226, 406, 1017, 1542
TfiI GAWTC 3 cut(s) 341, 431, 748
Tru1I TTAA 2 cut(s) 692, 1005
Tru9I TTAA 2 cut(s) 692, 1005
TscAI CASTG 4 cut(s) 419, 655, 827, 1275
TseFI GTSAC 1 cut(s) 657
Tsp45I GTSAC 1 cut(s) 657
TspDTI ATGAA 8 cut(s) 408, 608, 956, 1001, 1212, 1248, 1359, 1443
TspGWI ACGGA 2 cut(s) 388, 756
TspRI CASTG 4 cut(s) 419, 655, 827, 1275
Van91I CCANNNNNTGG 2 cut(s) 406, 1427
VpaK11BI GGWCC 3 cut(s) 511, 1307, 1382
XagI CCTNNNNNAGG 1 cut(s) 1419
XapI RAATTY 3 cut(s) 69, 351, 1489
XbaI TCTAGA 1 cut(s) 850
XceI RCATGY 1 cut(s) 562
XhoI CTCGAG 1 cut(s) 1043
XspI CTAG 5 cut(s) 711, 851, 1068, 1158, 1494
ZraI GACGTC 2 cut(s) 1122, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.