MD15G1275400.v1.1

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
24196449 .. 24200033
3585 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1275400.v1.1.491

Sequence Viewer

Length: 1506 bp
ATGGCGTTCTCGTCATTATTCTCCACGCCGCAGCCCCAACAACAGCAGCAGCAATCGCTGTTTCAAACTCAACAGGCCTCGCAGCCTTTTCAGCAAAGCAGCTCCTTTTTCTCCCAACAACTACCGCAGCAGCAGCCGCCGCTGTTCCCACAGTCGCAATTTCAGCAGCAGCCACTGTTTCAACAGCCTCAATTTCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAATTGTACTTGTTTACGAACGAAAAGACTCCGGCGAGTTATGGTACCAAGTGGGCGGATTTCCATCCGGATTCCCAGAAAGTTCTTCTGCAAATTGAGGAACGGATACTGGGATATAGGGATGAAAGCCAGCGGCTGGATCAGTGTAGTCGCCTCTACGATTCATCAATTTCGAATGATGCTTTTGAGCATGACGCAAGTCATATTCTCCAGGAACTTGGGGGTATTGGTACTTCCATGGACCGACAGAAAGCTGTTCTGCACGAGCTGATGGCTATTGTGAAAGATATGTTGCGGAACAGCGAGGTTGCTGTTCGTTCTTTCATGATTCTACGCCCAAGGTTTCTTCATCCAAATGCAGGAGGTACTTCAAATGCTACTGCCCCATCACAAGCTCCTGGAGCAACTGTACCACTAGGTTCAAGTAGTCAACCAACAGCTACTTCTATAGTGCCAGTTTTTGATTTTTACAATGGGATTCCAAGGAAACCATCTCCCTTCCTACAGCAAACAATTGCAAGATTCGAGAAGTATCTTGTTGAGTGTCGCCAGTGGATTGAAGAATTAGAGCAGCTGCTTCTGGACTCAGAGAGGACCTCTGCCAATGATAGATCCTCGTTGTTGCAGTCTCTTCCAAAAGTTATGAAAAATGTGCATGATTTTTTTGTTCACGTGGCAGCTAAGGTGGAGAGTATTCATCAATACGTTGTGTCCATGAAAACAGCTTATCTTGTTAACCAGCGCCGCCAAGGGGATGGGAATGATCCATTTCTCGAGGCTGATCGGCGGGAAACTGCTAGGCAAGAAGCTGCTGCTAAGAGGGTGCATCCAACTTTGCATTTACCTGCAACTTCGCAACCATCAACACAAGTTGCTGGGTTGTTTGCCAGTTCAGGAACTCCTGGGACATCAACTGCCCCACAGACATCTGCAGCTACCATTACAGCTTCATCTGGGAGTGGACTTTTCAGTACCCCTTCTGCTCCATCTACTTCCACGTCTTCCTCTCTGTTTGCTACACCACCCACTTCGGGTCCCGCATCTTCTCTTTTTTCAACACCATCTGCTACACCTCAGGCATCACTGTTTAGTTCTTCATCAGCGTTTGGACCTGCTTCAACTCCCTCTCTGTTTTCCAATCCTACTCCAGGCTTCGGTTCTACTACTCCTCTTGGAAGTTCATTATTTACTTCAGGTAGTGCTGGATCAGGGCTGAATTCTAGCTTTACTTCAACGAAATCAGCACGGCCAAAAAGTCGAACTGGTGGCCGCCGTTAG

Protein Analysis

502

Amino Acids

54.56

Weight (kDa)

9.0

Isoelectric Point (pI)

66.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013560)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1081, 1348
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 364
AccIII TCCGGA 1 cut(s) 295
AclWI GGATC 4 cut(s) 375, 834, 986, 1441
AcoI YGGCCR 2 cut(s) 1475, 1495
AcsI RAATTY 1 cut(s) 1444
AcuI CTGAAG 1 cut(s) 1404
AcvI CACGTG 1 cut(s) 901
AfaI GTAC 6 cut(s) 236, 274, 460, 595, 639, 1201
AfiI CCNNNNNNNGG 6 cut(s) 364, 587, 979, 1259, 1376, 1382
AgsI TTSAA 8 cut(s) 65, 182, 600, 651, 788, 1284, 1347, 1461
AjiI CACGTC 1 cut(s) 1227
AjnI CCWGG 4 cut(s) 438, 625, 1129, 1375
AjuI GAANNNNNNNTTGG 2 cut(s) 655, 687
Alw26I GTCTC 1 cut(s) 861
AlwI GGATC 4 cut(s) 375, 834, 986, 1441
AlwNI CAGNNNCTG 2 cut(s) 175, 364
Ama87I CYCGRG 1 cut(s) 1001
Aor13HI TCCGGA 1 cut(s) 295
AoxI GGCC 3 cut(s) 75, 1475, 1495
ApoI RAATTY 1 cut(s) 1444
Asp718I GGTACC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 972
AspS9I GGNCC 4 cut(s) 469, 822, 1262, 1337
AsuII TTCGAA 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 1001
AvaII GGWCC 4 cut(s) 469, 822, 1262, 1337
AxyI CCTNAGG 1 cut(s) 1302
BanI GGYRCC 1 cut(s) 272
BarI GAAGNNNNNNTAC 2 cut(s) 445, 477
BauI CACGAG 1 cut(s) 491
BbrPI CACGTG 1 cut(s) 901
BbsI GAAGAC 1 cut(s) 1221
BccI CCATC 8 cut(s) 300, 493, 622, 727, 977, 1096, 1222, 1297
BceAI ACGGC 2 cut(s) 1485, 1490
BciT130I CCWGG 4 cut(s) 440, 627, 1131, 1377
BciVI GTATCC 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 861
BfaI CTAG 3 cut(s) 644, 1026, 1449
BfmI CTRYAG 3 cut(s) 675, 731, 1158
BfoI RGCGCY 1 cut(s) 973
BfuAI ACCTGC 2 cut(s) 1081, 1348
BfuI GTATCC 1 cut(s) 327
Bme1390I CCNGG 4 cut(s) 440, 627, 1131, 1377
Bme18I GGWCC 4 cut(s) 469, 822, 1262, 1337
BmeT110I CYCGRG 1 cut(s) 1001
BmgBI CACGTC 1 cut(s) 1227
BmgT120I GGNCC 4 cut(s) 469, 822, 1262, 1337
BmiI GGNNCC 3 cut(s) 274, 1263, 1264
BmrFI CCNGG 4 cut(s) 440, 627, 1131, 1377
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 4 cut(s) 397, 1063, 1277, 1316
BmuI ACTGGG 1 cut(s) 347
BoxI GACNNNNGTC 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 1221
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpmI CTGGAG 3 cut(s) 422, 648, 1359
Bpu10I CCTNAGC 1 cut(s) 909
Bpu14I TTCGAA 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 901
BsaBI GATNNNNATC 1 cut(s) 291
BsaJI CCNNGG 5 cut(s) 465, 566, 710, 976, 1130
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 6 cut(s) 364, 587, 979, 1259, 1376, 1382
Bse1I ACTGG 5 cut(s) 342, 683, 778, 1116, 1495
Bse21I CCTNAGG 1 cut(s) 1302
Bse8I GATNNNNATC 1 cut(s) 291
BseAI TCCGGA 1 cut(s) 295
BseBI CCWGG 4 cut(s) 440, 627, 1131, 1377
BseDI CCNNGG 5 cut(s) 465, 566, 710, 976, 1130
BseGI GGATG 5 cut(s) 292, 355, 577, 988, 1054
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 6 cut(s) 364, 587, 979, 1259, 1376, 1382
BseMII CTCAG 2 cut(s) 828, 1316
BseNI ACTGG 5 cut(s) 342, 683, 778, 1116, 1495
BseRI GAGGAG 1 cut(s) 1386
BseYI CCCAGC 1 cut(s) 1103
BsgI GTGCAG 1 cut(s) 473
BshFI GGCC 3 cut(s) 77, 1477, 1497
BshNI GGYRCC 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 1001
BsiSI CCGG 2 cut(s) 260, 296
BslFI GGGAC 2 cut(s) 1147, 1248
BslI CCNNNNNNNGG 6 cut(s) 364, 587, 979, 1259, 1376, 1382
BsmAI GTCTC 1 cut(s) 861
BsmFI GGGAC 2 cut(s) 1147, 1248
BsnI GGCC 3 cut(s) 77, 1477, 1497
BsoBI CYCGRG 1 cut(s) 1001
Bsp119I TTCGAA 1 cut(s) 401
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 5 cut(s) 367, 839, 991, 1009, 1433
Bsp19I CCATGG 1 cut(s) 465
BspANI GGCC 3 cut(s) 77, 1477, 1497
BspCNI CTCAG 2 cut(s) 827, 1315
BspEI TCCGGA 1 cut(s) 295
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 3 cut(s) 274, 1263, 1264
BspMAI CTGCAG 1 cut(s) 1162
BspMI ACCTGC 2 cut(s) 1081, 1348
BspPI GGATC 4 cut(s) 375, 834, 986, 1441
BspT104I TTCGAA 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 272
BsrI ACTGG 5 cut(s) 342, 683, 778, 1116, 1495
BssECI CCNNGG 5 cut(s) 465, 566, 710, 976, 1130
BssMI GATC 5 cut(s) 367, 839, 991, 1009, 1433
BssSI CACGAG 1 cut(s) 491
BssT1I CCWWGG 4 cut(s) 465, 566, 710, 976
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 4 cut(s) 440, 627, 1131, 1377
Bst4CI ACNGT 4 cut(s) 153, 177, 637, 1314
Bst6I CTCTTC 1 cut(s) 864
BstBAI YACGTR 1 cut(s) 901
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 4 cut(s) 814, 909, 1044, 1302
BstDSI CCRYGG 1 cut(s) 465
BstENI CCTNNNNNAGG 1 cut(s) 1374
BstF5I GGATG 5 cut(s) 292, 355, 577, 988, 1054
BstH2I RGCGCY 1 cut(s) 973
BstHHI GCGC 1 cut(s) 972
BstKTI GATC 5 cut(s) 370, 842, 994, 1012, 1436
BstMAI GTCTC 1 cut(s) 861
BstMBI GATC 5 cut(s) 367, 839, 991, 1009, 1433
BstNI CCWGG 4 cut(s) 440, 627, 1131, 1377
BstPAI GACNNNNGTC 1 cut(s) 426
BstSCI CCNGG 4 cut(s) 438, 625, 1129, 1375
BstSFI CTRYAG 3 cut(s) 675, 731, 1158
BstV2I GAAGAC 1 cut(s) 1221
BstX2I RGATCY 1 cut(s) 839
BstXI CCANNNNNNTGG 2 cut(s) 446, 983
BstYI RGATCY 1 cut(s) 839
Bsu36I CCTNAGG 1 cut(s) 1302
BsuI GTATCC 1 cut(s) 327
BsuRI GGCC 3 cut(s) 77, 1477, 1497
BtgI CCRYGG 1 cut(s) 465
BtrI CACGTC 1 cut(s) 1227
BtsCI GGATG 5 cut(s) 292, 355, 577, 988, 1054
BtsIMutI CAGTG 4 cut(s) 173, 377, 785, 1310
BveI ACCTGC 2 cut(s) 1081, 1348
Cac8I GCNNGC 1 cut(s) 359
CaiI CAGNNNCTG 2 cut(s) 175, 364
CciI TCATGA 1 cut(s) 552
CfoI GCGC 1 cut(s) 972
Cfr13I GGNCC 4 cut(s) 469, 822, 1262, 1337
CseI GACGC 1 cut(s) 431
Csp6I GTAC 6 cut(s) 235, 273, 459, 594, 638, 1200
CviAII CATG 5 cut(s) 419, 466, 553, 884, 943
CviQI GTAC 6 cut(s) 235, 273, 459, 594, 638, 1200
DdeI CTNAG 4 cut(s) 814, 909, 1044, 1302
DpnI GATC 5 cut(s) 369, 841, 993, 1011, 1435
DpnII GATC 5 cut(s) 367, 839, 991, 1009, 1433
EaeI YGGCCR 2 cut(s) 1475, 1495
Eam1104I CTCTTC 1 cut(s) 864
EarI CTCTTC 1 cut(s) 864
EciI GGCGGA 1 cut(s) 299
Eco130I CCWWGG 4 cut(s) 465, 566, 710, 976
Eco147I AGGCCT 1 cut(s) 77
Eco47I GGWCC 4 cut(s) 469, 822, 1262, 1337
Eco57I CTGAAG 1 cut(s) 1404
Eco72I CACGTG 1 cut(s) 901
Eco81I CCTNAGG 1 cut(s) 1302
Eco88I CYCGRG 1 cut(s) 1001
EcoNI CCTNNNNNAGG 1 cut(s) 1374
EcoO109I RGGNCCY 2 cut(s) 822, 1262
EcoRI GAATTC 1 cut(s) 1444
EcoRII CCWGG 4 cut(s) 438, 625, 1129, 1375
EcoT14I CCWWGG 4 cut(s) 465, 566, 710, 976
ErhI CCWWGG 4 cut(s) 465, 566, 710, 976
FaeI CATG 5 cut(s) 422, 469, 556, 887, 946
FaqI GGGAC 2 cut(s) 1147, 1248
FatI CATG 5 cut(s) 418, 465, 552, 883, 942
FauI CCCGC 2 cut(s) 1008, 1273
FokI GGATG 5 cut(s) 279, 362, 564, 995, 1041
FspBI CTAG 3 cut(s) 644, 1026, 1449
GlaI GCGC 1 cut(s) 971
GsaI CCCAGC 1 cut(s) 1107
GsuI CTGGAG 3 cut(s) 422, 648, 1359
HaeII RGCGCY 1 cut(s) 973
HaeIII GGCC 3 cut(s) 77, 1477, 1497
HapII CCGG 2 cut(s) 260, 296
HgaI GACGC 1 cut(s) 431
HhaI GCGC 1 cut(s) 972
Hin1II CATG 5 cut(s) 422, 469, 556, 887, 946
Hin6I GCGC 1 cut(s) 970
HinP1I GCGC 1 cut(s) 970
HincII GTYRAC 2 cut(s) 659, 964
HindII GTYRAC 2 cut(s) 659, 964
HinfI GANTC 7 cut(s) 256, 299, 389, 556, 706, 750, 812
HpaI GTTAAC 1 cut(s) 964
HpaII CCGG 2 cut(s) 260, 296
Hpy166II GTNNAC 5 cut(s) 243, 659, 898, 964, 1190
Hpy188I TCNGA 1 cut(s) 817
Hpy188III TCNNGA 6 cut(s) 296, 553, 754, 809, 1001, 1122
Hpy8I GTNNAC 5 cut(s) 243, 659, 898, 964, 1190
HpyAV CCTTC 2 cut(s) 736, 1215
HpyCH4III ACNGT 4 cut(s) 153, 177, 637, 1314
HpyCH4IV ACGT 3 cut(s) 900, 933, 1226
HpyF3I CTNAG 4 cut(s) 814, 909, 1044, 1302
HpySE526I ACGT 3 cut(s) 900, 933, 1226
Hsp92II CATG 5 cut(s) 422, 469, 556, 887, 946
HspAI GCGC 1 cut(s) 970
KflI GGGWCCC 1 cut(s) 1262
Kpn2I TCCGGA 1 cut(s) 295
KpnI GGTACC 1 cut(s) 276
KspAI GTTAAC 1 cut(s) 964
Kzo9I GATC 5 cut(s) 367, 839, 991, 1009, 1433
LmnI GCTCC 4 cut(s) 107, 628, 629, 1216
LweI GCATC 4 cut(s) 397, 1063, 1277, 1316
MaeI CTAG 3 cut(s) 644, 1026, 1449
MaeII ACGT 3 cut(s) 900, 933, 1226
MalI GATC 5 cut(s) 369, 841, 993, 1011, 1435
MboI GATC 5 cut(s) 367, 839, 991, 1009, 1433
MboII GAAGA 7 cut(s) 305, 566, 800, 851, 1221, 1263, 1314
MfeI CAATTG 2 cut(s) 230, 741
MflI RGATCY 1 cut(s) 839
MluCI AATT 8 cut(s) 158, 191, 230, 321, 396, 741, 791, 1444
MlyI GAGTC 2 cut(s) 250, 806
MmeI TCCRAC 1 cut(s) 1082
MroI TCCGGA 1 cut(s) 295
MseI TTAA 1 cut(s) 963
MslI CAYNNNNRTG 1 cut(s) 582
MspA1I CMGCKG 3 cut(s) 142, 361, 802
MspI CCGG 2 cut(s) 260, 296
MspR9I CCNGG 4 cut(s) 440, 627, 1131, 1377
MunI CAATTG 2 cut(s) 230, 741
MvaI CCWGG 4 cut(s) 440, 627, 1131, 1377
NcoI CCATGG 1 cut(s) 465
NdeII GATC 5 cut(s) 367, 839, 991, 1009, 1433
NlaIII CATG 5 cut(s) 422, 469, 556, 887, 946
NlaIV GGNNCC 3 cut(s) 274, 1263, 1264
NspV TTCGAA 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 1001
PagI TCATGA 1 cut(s) 552
PceI AGGCCT 1 cut(s) 77
PfeI GAWTC 5 cut(s) 299, 389, 556, 706, 750
PflMI CCANNNNNTGG 1 cut(s) 364
PfoI TCCNGGA 2 cut(s) 438, 625
PleI GAGTC 2 cut(s) 250, 806
PmaCI CACGTG 1 cut(s) 901
PmlI CACGTG 1 cut(s) 901
PpsI GAGTC 2 cut(s) 250, 806
Ppu21I YACGTR 1 cut(s) 901
PpuMI RGGWCCY 2 cut(s) 822, 1262
PshAI GACNNNNGTC 1 cut(s) 426
Psp5II RGGWCCY 2 cut(s) 822, 1262
Psp6I CCWGG 4 cut(s) 438, 625, 1129, 1375
PspCI CACGTG 1 cut(s) 901
PspFI CCCAGC 1 cut(s) 1103
PspGI CCWGG 4 cut(s) 438, 625, 1129, 1375
PspN4I GGNNCC 3 cut(s) 274, 1263, 1264
PspPI GGNCC 4 cut(s) 469, 822, 1262, 1337
PspPPI RGGWCCY 2 cut(s) 822, 1262
PstI CTGCAG 1 cut(s) 1162
PstNI CAGNNNCTG 2 cut(s) 175, 364
PsuI RGATCY 1 cut(s) 839
PvuII CAGCTG 1 cut(s) 802
RsaI GTAC 6 cut(s) 236, 274, 460, 595, 639, 1201
RsaNI GTAC 6 cut(s) 235, 273, 459, 594, 638, 1200
RseI CAYNNNNRTG 1 cut(s) 582
SaqAI TTAA 1 cut(s) 963
Sau3AI GATC 5 cut(s) 367, 839, 991, 1009, 1433
Sau96I GGNCC 4 cut(s) 469, 822, 1262, 1337
SchI GAGTC 2 cut(s) 250, 806
ScrFI CCNGG 4 cut(s) 440, 627, 1131, 1377
SfaNI GCATC 4 cut(s) 397, 1063, 1277, 1316
SfcI CTRYAG 3 cut(s) 675, 731, 1158
Sfr274I CTCGAG 1 cut(s) 1001
SfuI TTCGAA 1 cut(s) 401
SinI GGWCC 4 cut(s) 469, 822, 1262, 1337
SlaI CTCGAG 1 cut(s) 1001
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 1 cut(s) 1001
SmoI CTYRAG 1 cut(s) 1001
Sse9I AATT 8 cut(s) 158, 191, 230, 321, 396, 741, 791, 1444
SseBI AGGCCT 1 cut(s) 77
SspMI CTAG 3 cut(s) 644, 1026, 1449
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 4 cut(s) 438, 625, 1129, 1375
StyI CCWWGG 4 cut(s) 465, 566, 710, 976
TaaI ACNGT 4 cut(s) 153, 177, 637, 1314
TaiI ACGT 3 cut(s) 903, 936, 1229
TaqI TCGA 4 cut(s) 401, 753, 1002, 1486
TaqII GACCGA 1 cut(s) 486
TasI AATT 8 cut(s) 158, 191, 230, 321, 396, 741, 791, 1444
TatI WGTACW 1 cut(s) 234
TauI GCSGC 6 cut(s) 31, 139, 142, 364, 975, 1500
TfiI GAWTC 5 cut(s) 299, 389, 556, 706, 750
Tru1I TTAA 1 cut(s) 963
Tru9I TTAA 1 cut(s) 963
TscAI CASTG 4 cut(s) 180, 377, 785, 1317
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 4 cut(s) 180, 377, 785, 1317
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 4 cut(s) 469, 822, 1262, 1337
XagI CCTNNNNNAGG 1 cut(s) 1374
XapI RAATTY 1 cut(s) 1444
XhoI CTCGAG 1 cut(s) 1001
XspI CTAG 3 cut(s) 644, 1026, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.