Rh2CG172100

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
15376826 .. 15381513
4688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG172100.1

Sequence Viewer

Length: 1551 bp
ATGTCGTTCTCCCTCTTCTCATCGGCGCAACCGCAGCAAACGCCGCAGCCACAATCCTCCCTCTTCCAAACCCCAAGCCTCTTCCAAACCCAACAATCCCCAAACCCCTTTCAGCAAACCCAGCAATCCCCAAACCCCTTCCAGCAATCCCCGAGCCTTTTCCAGCAAAATCAGCAGTCCCCGAGTCCTTTTCAGCAAAGCACTTCCTTGTTCTCGCAACCCCAGCAGCAGCAGCAGCAGCAACAGCAACAGTCGCCGTTTCAGCCGCAGCAGTTTCAGTCTCAGTCGCCGCTTCAATTTCAGCCGCCGCCGCAGCAGCAGCAGCAACAGCAGCAGCAGTTGTTTTTGTTTACTAATGACAAGACTCCGGCGAGTTACGGCACCAAGTGGGCCGATTTACACCCCGATTCGCAGAAGATTCTGCTCCAGATTGAGGAGCGCATACTGGGGTACAGGGATGAGAGCCAAAGGCTGGATCAGTCTAGTCGTCTCTACGATTCTTCAGTTTCCAATGATGGGTTTGAGCAGGATGCAAGTCGTATCATTCAGGAGCTTGGGGGAATTGGTACTGCCATGGACCGACAGAAAGCTCTGCTGCAGGAGCTGATGGCTACCGTGAAAGAGATGTTACGGAACAGTGAGGTTGCTGTACGTTCTTTCATGATGCTACGTCCAAGGTTTCTTCGTCCAAATGCAGGAGGTACTTCAAATGGCACTGCAGCGTCACAGGCTCCTGGAGCAACAGAAACACCAGGCTCAACTAGTCAACCAACAACTACTTCTATAGTTCCAGTTTTTGACTTCTATAATGGAGTTCCAAGGAAACCATCCCCCTTCTTACAGCACACAATTGCAAGATTTGAGAAGTATCTTGGTGAGTGCCGCCAATGGATTGAAGAAATAGAGCAGCTCCTTTTAAATTCAGAGAGGAACTCTTCCAATGATGGATCCTCATTGTTGCAATCTCTCCCAAAAGTCATGTCAAATGTGCATGACTTTTTTGTTCACGTGGCTGCTAAGGTGGAGAGTATTCATCAGTACATTGTATCCATGAAAGCAGCTTATCTTGCTAACCAGCGTCGCCTAGGGGATGGGAATGACCCATTTCTTGAGGCTGATAGGCGGGAAACAGCAAGGCAAGAAGCTGCTGCTAAGAGAGTGCATCCAACTTTGCATTTACCTGCAATTTCACAACCATCAACACAAGTGGCTGGATTATTGGCCAGCTCAGGAAGTCAGGCGGCATCAACGGCTCCACAGACATCTGCAGCTACTACAACAGCTTCATCTGGGAGTGCATTCTCACTTTTCAGTACACCTTCCGCTCCATCTTCTTCTTCCATGGCTTCATCTTTGTTTGCAACACCAACCACTCCTGCTCCAGTATCTTCTCTTTTTGGACCATCATCTGCTACGCCCCAGACATCAACTGCTTCTCAGCTAGGCAATACTGCTCAGGCCTTGGGTTCTACTACTCCTGTGGGAGGTTCATTATTTTCTACTCCATTTGCTTCCGGTACGGTCTCATTCTTGTTAATGTTACATCAATAA

Protein Analysis

516

Amino Acids

56.23

Weight (kDa)

6.46

Isoelectric Point (pI)

79.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013560)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1189
AccB1I GGYRCC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 472
AccBSI CCGCTC 1 cut(s) 1325
AclWI GGATC 3 cut(s) 483, 942, 955
AcoI YGGCCR 1 cut(s) 1221
AcsI RAATTY 1 cut(s) 919
AcuI CTGAAG 1 cut(s) 486
AcvI CACGTG 1 cut(s) 1009
AdeI CACNNNGTG 1 cut(s) 387
AfaI GTAC 7 cut(s) 452, 568, 651, 703, 1040, 1315, 1519
AfiI CCNNNNNNNGG 5 cut(s) 433, 472, 516, 695, 1484
AgsI TTSAA 3 cut(s) 296, 708, 896
AhlI ACTAGT 1 cut(s) 761
AjnI CCWGG 2 cut(s) 733, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 763, 795
Alw26I GTCTC 3 cut(s) 285, 494, 1528
AlwI GGATC 3 cut(s) 483, 942, 955
AlwNI CAGNNNCTG 1 cut(s) 604
Ama87I CYCGRG 2 cut(s) 151, 181
AoxI GGCC 3 cut(s) 390, 1221, 1458
ApoI RAATTY 1 cut(s) 919
ArsI GACNNNNNNTTYG 2 cut(s) 965, 997
AspA2I CCTAGG 1 cut(s) 1084
AspLEI GCGC 2 cut(s) 28, 441
AspS9I GGNCC 3 cut(s) 390, 577, 1400
AsuHPI GGTGA 1 cut(s) 887
AvaI CYCGRG 2 cut(s) 151, 181
AvaII GGWCC 2 cut(s) 577, 1400
AvrII CCTAGG 1 cut(s) 1084
BalI TGGCCA 1 cut(s) 1223
BamHI GGATCC 1 cut(s) 947
BanI GGYRCC 1 cut(s) 380
BbrPI CACGTG 1 cut(s) 1009
BccI CCATC 8 cut(s) 509, 601, 835, 938, 1085, 1204, 1336, 1411
BceAI ACGGC 3 cut(s) 241, 394, 1266
BciT130I CCWGG 2 cut(s) 735, 753
BciVI GTATCC 1 cut(s) 1057
BcoDI GTCTC 3 cut(s) 285, 494, 1528
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 4 cut(s) 483, 762, 1085, 1442
BfmI CTRYAG 4 cut(s) 596, 717, 783, 1266
BfuAI ACCTGC 1 cut(s) 1189
BfuI GTATCC 1 cut(s) 1057
BlnI CCTAGG 1 cut(s) 1084
Bme1390I CCNGG 2 cut(s) 735, 753
Bme18I GGWCC 2 cut(s) 577, 1400
BmeT110I CYCGRG 2 cut(s) 151, 181
BmgT120I GGNCC 3 cut(s) 390, 577, 1400
BmiI GGNNCC 4 cut(s) 382, 732, 949, 1254
BmrFI CCNGG 2 cut(s) 735, 753
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 4 cut(s) 520, 654, 1171, 1253
BmuI ACTGGG 1 cut(s) 455
BplI GAGNNNNNCTC 2 cut(s) 917, 949
BpmI CTGGAG 3 cut(s) 410, 756, 1365
Bpu10I CCTNAGC 3 cut(s) 1017, 1228, 1455
BpuEI CTTGAG 1 cut(s) 1130
BsaAI YACGTR 1 cut(s) 1009
BsaI GGTCTC 1 cut(s) 1528
BsaJI CCNNGG 6 cut(s) 573, 674, 818, 1084, 1341, 1461
BsaWI WCCGGW 1 cut(s) 1514
BsaXI ACNNNNNCTCC 2 cut(s) 1363, 1393
Bsc4I CCNNNNNNNGG 5 cut(s) 433, 472, 516, 695, 1484
Bse1I ACTGG 3 cut(s) 450, 791, 1382
BseBI CCWGG 2 cut(s) 735, 753
BseDI CCNNGG 6 cut(s) 573, 674, 818, 1084, 1341, 1461
BseGI GGATG 5 cut(s) 463, 535, 827, 1096, 1162
BseLI CCNNNNNNNGG 5 cut(s) 433, 472, 516, 695, 1484
BseMII CTCAG 4 cut(s) 296, 1242, 1451, 1469
BseNI ACTGG 3 cut(s) 450, 791, 1382
BseRI GAGGAG 1 cut(s) 449
BseYI CCCAGC 2 cut(s) 120, 222
BshFI GGCC 3 cut(s) 392, 1223, 1460
BshNI GGYRCC 1 cut(s) 380
BsiHKCI CYCGRG 2 cut(s) 151, 181
BsiSI CCGG 2 cut(s) 368, 1515
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 5 cut(s) 433, 472, 516, 695, 1484
BsmAI GTCTC 3 cut(s) 285, 494, 1528
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 1298
BsnI GGCC 3 cut(s) 392, 1223, 1460
Bso31I GGTCTC 1 cut(s) 1528
BsoBI CYCGRG 2 cut(s) 151, 181
Bsp143I GATC 2 cut(s) 475, 947
Bsp19I CCATGG 2 cut(s) 573, 1341
BspANI GGCC 3 cut(s) 392, 1223, 1460
BspCNI CTCAG 4 cut(s) 295, 1241, 1450, 1468
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 4 cut(s) 382, 732, 949, 1254
BspMAI CTGCAG 3 cut(s) 600, 721, 1270
BspMI ACCTGC 1 cut(s) 1189
BspPI GGATC 3 cut(s) 483, 942, 955
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 1528
BsrBI CCGCTC 1 cut(s) 1325
BsrI ACTGG 3 cut(s) 450, 791, 1382
BssECI CCNNGG 6 cut(s) 573, 674, 818, 1084, 1341, 1461
BssMI GATC 2 cut(s) 475, 947
BssT1I CCWWGG 6 cut(s) 573, 674, 818, 1084, 1341, 1461
Bst2UI CCWGG 2 cut(s) 735, 753
Bst4CI ACNGT 4 cut(s) 252, 616, 638, 1522
Bst6I CTCTTC 4 cut(s) 20, 68, 86, 940
BstBAI YACGTR 1 cut(s) 1009
BstC8I GCNNGC 1 cut(s) 1225
BstDEI CTNAG 6 cut(s) 282, 1017, 1152, 1228, 1437, 1455
BstDSI CCRYGG 2 cut(s) 573, 1341
BstENI CCTNNNNNAGG 1 cut(s) 1482
BstF5I GGATG 5 cut(s) 463, 535, 827, 1096, 1162
BstHHI GCGC 2 cut(s) 28, 441
BstKTI GATC 2 cut(s) 478, 950
BstMAI GTCTC 3 cut(s) 285, 494, 1528
BstMBI GATC 2 cut(s) 475, 947
BstNI CCWGG 2 cut(s) 735, 753
BstSCI CCNGG 2 cut(s) 733, 751
BstSFI CTRYAG 4 cut(s) 596, 717, 783, 1266
BstX2I RGATCY 1 cut(s) 947
BstYI RGATCY 1 cut(s) 947
BsuI GTATCC 1 cut(s) 1057
BsuRI GGCC 3 cut(s) 392, 1223, 1460
BtgI CCRYGG 2 cut(s) 573, 1341
BtsCI GGATG 5 cut(s) 463, 535, 827, 1096, 1162
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 2 cut(s) 643, 714
BveI ACCTGC 1 cut(s) 1189
Cac8I GCNNGC 1 cut(s) 1225
CaiI CAGNNNCTG 1 cut(s) 604
CciI TCATGA 1 cut(s) 660
CfoI GCGC 2 cut(s) 28, 441
Cfr13I GGNCC 3 cut(s) 390, 577, 1400
CseI GACGC 2 cut(s) 711, 1067
Csp6I GTAC 7 cut(s) 451, 567, 650, 702, 1039, 1314, 1518
CspCI CAANNNNNGTGG 2 cut(s) 1188, 1223
CviAII CATG 6 cut(s) 574, 661, 979, 992, 1051, 1342
CviQI GTAC 7 cut(s) 451, 567, 650, 702, 1039, 1314, 1518
DdeI CTNAG 6 cut(s) 282, 1017, 1152, 1228, 1437, 1455
DpnI GATC 2 cut(s) 477, 949
DpnII GATC 2 cut(s) 475, 947
DraI TTTAAA 1 cut(s) 918
DraIII CACNNNGTG 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 1221
Eam1104I CTCTTC 4 cut(s) 20, 68, 86, 940
EarI CTCTTC 4 cut(s) 20, 68, 86, 940
Eco130I CCWWGG 6 cut(s) 573, 674, 818, 1084, 1341, 1461
Eco147I AGGCCT 1 cut(s) 1460
Eco31I GGTCTC 1 cut(s) 1528
Eco47I GGWCC 2 cut(s) 577, 1400
Eco57I CTGAAG 1 cut(s) 486
Eco72I CACGTG 1 cut(s) 1009
Eco88I CYCGRG 2 cut(s) 151, 181
EcoNI CCTNNNNNAGG 1 cut(s) 1482
EcoRII CCWGG 2 cut(s) 733, 751
EcoT14I CCWWGG 6 cut(s) 573, 674, 818, 1084, 1341, 1461
ErhI CCWWGG 6 cut(s) 573, 674, 818, 1084, 1341, 1461
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 6 cut(s) 577, 664, 982, 995, 1054, 1345
FaiI YATR 9 cut(s) 443, 575, 662, 785, 807, 980, 993, 1052, 1343
FaqI GGGAC 1 cut(s) 163
FatI CATG 6 cut(s) 573, 660, 978, 991, 1050, 1341
FauI CCCGC 1 cut(s) 1116
FokI GGATG 5 cut(s) 470, 542, 814, 1103, 1149
FspBI CTAG 4 cut(s) 483, 762, 1085, 1442
GlaI GCGC 2 cut(s) 27, 440
GsaI CCCAGC 2 cut(s) 124, 226
GsuI CTGGAG 3 cut(s) 410, 756, 1365
HaeIII GGCC 3 cut(s) 392, 1223, 1460
HapII CCGG 2 cut(s) 368, 1515
HgaI GACGC 2 cut(s) 711, 1067
HhaI GCGC 2 cut(s) 28, 441
Hin1II CATG 6 cut(s) 577, 664, 982, 995, 1054, 1345
Hin6I GCGC 2 cut(s) 26, 439
HinP1I GCGC 2 cut(s) 26, 439
HincII GTYRAC 1 cut(s) 767
HindII GTYRAC 1 cut(s) 767
HinfI GANTC 5 cut(s) 184, 364, 407, 418, 497
HpaII CCGG 2 cut(s) 368, 1515
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 4 cut(s) 351, 767, 1006, 1316
Hpy188I TCNGA 1 cut(s) 925
Hpy188III TCNNGA 5 cut(s) 427, 548, 661, 1109, 1230
Hpy8I GTNNAC 4 cut(s) 351, 767, 1006, 1316
Hpy99I CGWCG 1 cut(s) 1083
HpyAV CCTTC 3 cut(s) 148, 844, 1329
HpyCH4III ACNGT 4 cut(s) 252, 616, 638, 1522
HpyCH4IV ACGT 3 cut(s) 652, 670, 1008
HpyF3I CTNAG 6 cut(s) 282, 1017, 1152, 1228, 1437, 1455
HpySE526I ACGT 3 cut(s) 652, 670, 1008
Hsp92II CATG 6 cut(s) 577, 664, 982, 995, 1054, 1345
HspAI GCGC 2 cut(s) 26, 439
Kzo9I GATC 2 cut(s) 475, 947
LweI GCATC 4 cut(s) 520, 654, 1171, 1253
MaeI CTAG 4 cut(s) 483, 762, 1085, 1442
MaeII ACGT 3 cut(s) 652, 670, 1008
MaeIII GTNAC 4 cut(s) 374, 627, 723, 1539
MalI GATC 2 cut(s) 477, 949
MbiI CCGCTC 1 cut(s) 1325
MboI GATC 2 cut(s) 475, 947
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 1 cut(s) 947
MlsI TGGCCA 1 cut(s) 1223
MluCI AATT 5 cut(s) 296, 561, 849, 919, 1185
MluNI TGGCCA 1 cut(s) 1223
MlyI GAGTC 2 cut(s) 193, 358
MmeI TCCRAC 1 cut(s) 1190
Mox20I TGGCCA 1 cut(s) 1223
MscI TGGCCA 1 cut(s) 1223
MseI TTAA 2 cut(s) 917, 1535
Msp20I TGGCCA 1 cut(s) 1223
MspI CCGG 2 cut(s) 368, 1515
MspR9I CCNGG 2 cut(s) 735, 753
MunI CAATTG 1 cut(s) 849
Mva1269I GAATGC 1 cut(s) 1298
MvaI CCWGG 2 cut(s) 735, 753
NcoI CCATGG 2 cut(s) 573, 1341
NdeII GATC 2 cut(s) 475, 947
NlaIII CATG 6 cut(s) 577, 664, 982, 995, 1054, 1345
NlaIV GGNNCC 4 cut(s) 382, 732, 949, 1254
NmuCI GTSAC 1 cut(s) 723
PagI TCATGA 1 cut(s) 660
PceI AGGCCT 1 cut(s) 1460
PctI GAATGC 1 cut(s) 1298
PfeI GAWTC 3 cut(s) 407, 418, 497
PflMI CCANNNNNTGG 1 cut(s) 472
PfoI TCCNGGA 1 cut(s) 733
PleI GAGTC 2 cut(s) 192, 358
PmaCI CACGTG 1 cut(s) 1009
PmlI CACGTG 1 cut(s) 1009
PpsI GAGTC 2 cut(s) 192, 358
Ppu21I YACGTR 1 cut(s) 1009
Psp6I CCWGG 2 cut(s) 733, 751
PspCI CACGTG 1 cut(s) 1009
PspFI CCCAGC 2 cut(s) 120, 222
PspGI CCWGG 2 cut(s) 733, 751
PspN4I GGNNCC 4 cut(s) 382, 732, 949, 1254
PspPI GGNCC 3 cut(s) 390, 577, 1400
PstI CTGCAG 3 cut(s) 600, 721, 1270
PstNI CAGNNNCTG 1 cut(s) 604
PsuI RGATCY 1 cut(s) 947
RsaI GTAC 7 cut(s) 452, 568, 651, 703, 1040, 1315, 1519
RsaNI GTAC 7 cut(s) 451, 567, 650, 702, 1039, 1314, 1518
SaqAI TTAA 2 cut(s) 917, 1535
Sau3AI GATC 2 cut(s) 475, 947
Sau96I GGNCC 3 cut(s) 390, 577, 1400
SchI GAGTC 2 cut(s) 193, 358
ScrFI CCNGG 2 cut(s) 735, 753
SfaNI GCATC 4 cut(s) 520, 654, 1171, 1253
SfcI CTRYAG 4 cut(s) 596, 717, 783, 1266
SinI GGWCC 2 cut(s) 577, 1400
SmlI CTYRAG 1 cut(s) 1109
SmoI CTYRAG 1 cut(s) 1109
SpeI ACTAGT 1 cut(s) 761
Sse9I AATT 5 cut(s) 296, 561, 849, 919, 1185
SseBI AGGCCT 1 cut(s) 1460
SspMI CTAG 4 cut(s) 483, 762, 1085, 1442
StuI AGGCCT 1 cut(s) 1460
StyD4I CCNGG 2 cut(s) 733, 751
StyI CCWWGG 6 cut(s) 573, 674, 818, 1084, 1341, 1461
TaaI ACNGT 4 cut(s) 252, 616, 638, 1522
TaiI ACGT 3 cut(s) 655, 673, 1011
TaqII GACCGA 1 cut(s) 594
TasI AATT 5 cut(s) 296, 561, 849, 919, 1185
TatI WGTACW 2 cut(s) 1038, 1313
TauI GCSGC 8 cut(s) 46, 268, 292, 307, 310, 313, 885, 1244
TfiI GAWTC 3 cut(s) 407, 418, 497
Tru1I TTAA 2 cut(s) 917, 1535
Tru9I TTAA 2 cut(s) 917, 1535
TscAI CASTG 2 cut(s) 643, 721
TseFI GTSAC 1 cut(s) 723
Tsp45I GTSAC 1 cut(s) 723
TspDTI ATGAA 6 cut(s) 649, 1022, 1067, 1275, 1338, 1479
TspGWI ACGGA 1 cut(s) 646
TspRI CASTG 2 cut(s) 643, 721
Van91I CCANNNNNTGG 1 cut(s) 472
VpaK11BI GGWCC 2 cut(s) 577, 1400
XagI CCTNNNNNAGG 1 cut(s) 1482
XapI RAATTY 1 cut(s) 919
XmaJI CCTAGG 1 cut(s) 1084
XspI CTAG 4 cut(s) 483, 762, 1085, 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.