Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8256557.1

Orthogroup ID

OG0013560

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 779

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8256557.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggaccgacagaaagctctgctgcaggagctgatggctaccgtgaaagagatgttacggaacagtgaggttgctgtacgttctttcatgatgctacgtccaaggtttcttcgtccaaatgcaggaggtacttcaaatggcactgcagcgtcacaggctcctggagcaacagaaacaccaggctcaactagtcaaccaacaactacttctatagttccagtttttgacttctataatggagttccaaggaaaccatcccccttcttacagcacacaattgcaagatttgagaaatatcttggtgagtgccgccaatggattgaagaaatagagcagctccttttaaattcagagaggaactcttccaatgatggatcctcattgttgcaatctctcccaaaagtcatgtcaaatgtgcatgacttttttgttcacgtggctgctaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_FG2

Protein Analysis

149

Amino Acids

16.58

Weight (kDa)

8.89

Isoelectric Point (pI)

68.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37130
fragaria_vesca	FvH4_1g14810
malus_domestica	MD02G1161300.v1.1 MD15G1275400.v1.1
prunus_persica	Prupe.7G142300_v2.0.a1
pyrus_communis	pycom02g12740 pycom15g23840
rosa_chinensis	RchiOBHm_Chr2g0103771
rosa_laevigata	RLG00000017258
rosa_multiflora	Rmu_co8256557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139410
rosa_rugosa	Rorug02G0117200
rosa_samantha	Rh2AG166200 Rh2BG173400 Rh2CG172100 Rh2DG171600
rosa_wichuraiana	Rw0G006920 Rw2G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	2 cut(s)	369, 382
AcsI	RAATTY	1 cut(s)	346
AcvI	CACGTG	1 cut(s)	436
AfaI	GTAC	2 cut(s)	78, 130
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	135, 323
AhlI	ACTAGT	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	160, 178
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AluBI	AGCT	3 cut(s)	17, 31, 337
AluI	AGCT	3 cut(s)	17, 31, 337
AlwI	GGATC	2 cut(s)	369, 382
AlwNI	CAGNNNCTG	1 cut(s)	31
ApeKI	GCWGC	4 cut(s)	22, 146, 334, 440
ApoI	RAATTY	1 cut(s)	346
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	374
BbrPI	CACGTG	1 cut(s)	436
BbvI	GCAGC	4 cut(s)	9, 158, 346, 427
BccI	CCATC	3 cut(s)	28, 262, 365
BciT130I	CCWGG	2 cut(s)	162, 180
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	3 cut(s)	23, 144, 210
BisI	GCNGC	5 cut(s)	23, 147, 310, 335, 441
BlsI	GCNGC	5 cut(s)	24, 148, 311, 336, 442
Bme1390I	CCNGG	2 cut(s)	162, 180
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	159, 376
BmrFI	CCNGG	2 cut(s)	162, 180
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	101, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	162, 180
BseDI	CCNNGG	2 cut(s)	101, 245
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	4 cut(s)	9, 158, 346, 427
BslI	CCNNNNNNNGG	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	374
BspACI	CCGC	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	159, 376
BspMAI	CTGCAG	2 cut(s)	27, 148
BspPI	GGATC	2 cut(s)	369, 382
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	101, 245
BssMI	GATC	1 cut(s)	374
BssT1I	CCWWGG	2 cut(s)	101, 245
Bst2UI	CCWGG	2 cut(s)	162, 180
Bst4CI	ACNGT	2 cut(s)	43, 65
Bst6I	CTCTTC	1 cut(s)	367
BstBAI	YACGTR	1 cut(s)	436
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	254
BstKTI	GATC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 155, 164
BstNI	CCWGG	2 cut(s)	162, 180
BstSCI	CCNGG	2 cut(s)	160, 178
BstSFI	CTRYAG	3 cut(s)	23, 144, 210
BstV1I	GCAGC	4 cut(s)	9, 158, 346, 427
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	254
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	70, 141
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	77, 129
CviAII	CATG	3 cut(s)	88, 406, 419
CviJI	RGCY	7 cut(s)	17, 31, 38, 158, 183, 337, 440
CviKI_1	RGCY	7 cut(s)	17, 31, 38, 158, 183, 337, 440
CviQI	GTAC	2 cut(s)	77, 129
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	1 cut(s)	376
DpnII	GATC	1 cut(s)	374
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	101, 245
Eco47I	GGWCC	1 cut(s)	4
Eco72I	CACGTG	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	160, 178
EcoT14I	CCWWGG	2 cut(s)	101, 245
ErhI	CCWWGG	2 cut(s)	101, 245
FaeI	CATG	3 cut(s)	91, 409, 422
FaiI	YATR	5 cut(s)	89, 212, 234, 407, 420
FatI	CATG	3 cut(s)	87, 405, 418
Fnu4HI	GCNGC	5 cut(s)	23, 147, 310, 335, 441
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	5 cut(s)	23, 147, 310, 335, 441
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	5 cut(s)	23, 147, 310, 335, 441
GsuI	CTGGAG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	91, 409, 422
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	194, 433
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	2 cut(s)	194, 433
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	43, 65
HpyCH4IV	ACGT	3 cut(s)	79, 97, 435
HpyCH4V	TGCA	6 cut(s)	25, 122, 146, 281, 388, 418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 155, 164
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	3 cut(s)	79, 97, 435
Hsp92II	CATG	3 cut(s)	91, 409, 422
Kzo9I	GATC	1 cut(s)	374
LmnI	GCTCC	4 cut(s)	28, 163, 164, 342
LpnPI	CCDG	8 cut(s)	11, 108, 140, 147, 165, 174, 192, 231
Lsp1109I	GCAGC	4 cut(s)	9, 158, 346, 427
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	3 cut(s)	79, 97, 435
MaeIII	GTNAC	2 cut(s)	54, 150
MalI	GATC	1 cut(s)	376
MboI	GATC	1 cut(s)	374
MboII	GAAGA	3 cut(s)	101, 335, 354
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	2 cut(s)	276, 346
MnlI	CCTC	4 cut(s)	61, 119, 348, 388
MseI	TTAA	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	162, 180
MunI	CAATTG	1 cut(s)	276
MvaI	CCWGG	2 cut(s)	162, 180
MwoI	GCNNNNNNNGC	3 cut(s)	28, 155, 164
NdeII	GATC	1 cut(s)	374
NlaIII	CATG	3 cut(s)	91, 409, 422
NlaIV	GGNNCC	2 cut(s)	159, 376
NmuCI	GTSAC	1 cut(s)	150
PagI	TCATGA	1 cut(s)	87
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	5 cut(s)	24, 148, 311, 336, 442
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	436
Psp6I	CCWGG	2 cut(s)	160, 178
PspCI	CACGTG	1 cut(s)	436
PspGI	CCWGG	2 cut(s)	160, 178
PspN4I	GGNNCC	2 cut(s)	159, 376
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	2 cut(s)	27, 148
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	2 cut(s)	78, 130
RsaNI	GTAC	2 cut(s)	77, 129
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	5 cut(s)	23, 147, 310, 335, 441
Sau3AI	GATC	1 cut(s)	374
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	162, 180
SetI	ASST	9 cut(s)	19, 33, 72, 82, 100, 107, 130, 339, 438
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	3 cut(s)	23, 144, 210
SinI	GGWCC	1 cut(s)	4
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	2 cut(s)	276, 346
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	160, 178
StyI	CCWWGG	2 cut(s)	101, 245
TaaI	ACNGT	2 cut(s)	43, 65
TaiI	ACGT	3 cut(s)	82, 100, 438
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	276, 346
TauI	GCSGC	1 cut(s)	312
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	2 cut(s)	70, 148
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	4 cut(s)	22, 146, 334, 440
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	70, 148
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	346
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.