Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013560

Physical Location & Seq

Genomic Coordinates Forward (+)

14552795 .. 14556900

Gene Structure 4106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017258

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGTCGTTCTCCCTATTCTCATCGGCGCAACCGCAGCAAACGCCGCAGCCACAATCCTCCCTCTTCCAAACCCCAAGCCTCTTCCAAACCCAACAATCCCCAAACCCCTTTCAGCAAACCCAGCAATCCCCAAACCCCTTCCAGCAATCCCCGAGCCTTTTCCAGCAAACTCAACAATCCCCGAGCCCTTTTCAGCAAAGCCCTTCTCTGTTCTCGCAACCCCAGCAGCAGCAGCAACAGTCGCCGTTTCAGCCGCAGCAGTTTCAGTCTCAGTCGCCGCTTCAATTTCAGCCGCCGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGTTGTTTTTGTTTACTAATGACAAGACTCCGGCGAGTTACGGCACCAAGTGGGCCGATTTACACCCCGATTCGCAGAAGATTCTGCTCCAGATTGAGGAACGCATACTGGGGTACAGGGATGAGAGCCAAAGGCTGGATCAGTCTAGTCGTCTCTACGATTCTTCAGTTTCCAATGATGGGTTCGAGCAGGATGCAAGTCGTATCATTCAGGAGCTTGGGGGAATTGGTACTGCCATGGACCGACAGAAAGCTCTGCTGCAGGAGCTGATGGCTACCGTGAAAGAGATGTTACGGAACAGTGAGGTTGCTGTTCGTTCTTTCATGATGCTACGTCCAAGGTTTCTTCGTCCAAATGCAGGAGGTACTTCAAATGGCACTGCAGCGTCACAGGCTCCTGGAGCAACAGAAACACCAGGCTCAACCAGTCAACCAACAACTACTTCTATAGTTCCAGTTTTTGACTTCTATAATGGAGTTCCAAGGAAACCATCCCCCTTCTTACAGCACACAATTGCAAGATTTGAGAAGTATCTTGGTGAGTGCCGCCAATGGATTGAAGAAATAGAGCAGCTCCTTTTAAATTCAGAGAGGAACTCTACCAATGATGGATCCTCATTGTTGCAATCTCTCCCAAAAGTCATGTCAAATGTGCATGACTTTTTTGTTCACGTGGCTGCTAAGGTGGAGAGTATTCATCAGTACATTGTATCCATGAAAGCAGCTTATCTTGCTAACCAGCGTCGCCTAGGGGATGGGAATGACCCATTTCTTGAGGCTGATAGGCGGGAAACAGCAAGGCAAGAAGCTGCTGCTAAGAGAGTGCATCCAACTTTGCATTTACCTGCAATTTCACAACCATCAACACAAGTGTCTGGATTGTTGGCTAGCTCAGGAAGTCAGGCGGCATCAACAGCATCAACGGCTCCACAAACATCTGCAGCTACTACAACAGCTTCATCTGGGAGTGCATTCTCACTTTTCAGTACACCTTCCGCTCCATCTTCTTCTTCCATGACTTCTTCTTTGTTTGCAACACCAACCACTCCTGCTCCAGTATCTTCTCTTTTTGGACCATCATCTGCTACGCCCCAGACATCAACTGCTTCTCAGCTAGGCAATACTGCTCAGGCCTTGGGTTCTACTACTCCTGTGGGAGGTTCATTATTTTCTACTCCATTTGCTTCCGGTCCTGCAACATCATTTGGGTCTAGCTTTGGGGCTGCAACGAAATCAACAAAGCCAAAAATTCGGTCTGGCCGACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_FG2

Protein Analysis

533

Amino Acids

57.69

Weight (kDa)

9.11

Isoelectric Point (pI)

79.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoporin_FG2	PF15967	274 - 383	1.3e-06	Nucleoporin FG repeated region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37130
fragaria_vesca	FvH4_1g14810
malus_domestica	MD02G1161300.v1.1 MD15G1275400.v1.1
prunus_persica	Prupe.7G142300_v2.0.a1
pyrus_communis	pycom02g12740 pycom15g23840
rosa_chinensis	RchiOBHm_Chr2g0103771
rosa_laevigata	RLG00000017258
rosa_multiflora	Rmu_co8256557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139410
rosa_rugosa	Rorug02G0117200
rosa_samantha	Rh2AG166200 Rh2BG173400 Rh2CG172100 Rh2DG171600
rosa_wichuraiana	Rw0G006920 Rw2G013020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1183
AccB1I	GGYRCC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	1328
AclWI	GGATC	3 cut(s)	477, 936, 949
AcoI	YGGCCR	1 cut(s)	1588
AcsI	RAATTY	2 cut(s)	913, 1578
AcuI	CTGAAG	1 cut(s)	480
AcvI	CACGTG	1 cut(s)	1003
AdeI	CACNNNGTG	1 cut(s)	381
AfaI	GTAC	5 cut(s)	446, 562, 697, 1034, 1318
AfiI	CCNNNNNNNGG	5 cut(s)	427, 466, 510, 689, 1487
AgsI	TTSAA	3 cut(s)	284, 702, 890
AjnI	CCWGG	2 cut(s)	727, 745
AjuI	GAANNNNNNNTTGG	4 cut(s)	497, 529, 757, 789
Alw26I	GTCTC	2 cut(s)	273, 488
AlwI	GGATC	3 cut(s)	477, 936, 949
AlwNI	CAGNNNCTG	1 cut(s)	598
Ama87I	CYCGRG	2 cut(s)	151, 181
AoxI	GGCC	3 cut(s)	384, 1461, 1588
ApoI	RAATTY	2 cut(s)	913, 1578
ArsI	GACNNNNNNTTYG	5 cut(s)	959, 991, 1339, 1371, 1568
AspA2I	CCTAGG	1 cut(s)	1078
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	4 cut(s)	384, 571, 1403, 1520
AsuHPI	GGTGA	1 cut(s)	881
AsuNHI	GCTAGC	1 cut(s)	1217
AvaI	CYCGRG	2 cut(s)	151, 181
AvaII	GGWCC	3 cut(s)	571, 1403, 1520
AvrII	CCTAGG	1 cut(s)	1078
BamHI	GGATCC	1 cut(s)	941
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	188
BbrPI	CACGTG	1 cut(s)	1003
BccI	CCATC	8 cut(s)	503, 595, 829, 932, 1079, 1198, 1339, 1414
BceAI	ACGGC	3 cut(s)	229, 388, 1269
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	2 cut(s)	729, 747
BciVI	GTATCC	1 cut(s)	1051
BcoDI	GTCTC	2 cut(s)	273, 488
BfaI	CTAG	5 cut(s)	477, 1079, 1218, 1445, 1542
BfmI	CTRYAG	4 cut(s)	590, 711, 777, 1269
BfuAI	ACCTGC	1 cut(s)	1183
BfuI	GTATCC	1 cut(s)	1051
BlnI	CCTAGG	1 cut(s)	1078
Bme1390I	CCNGG	2 cut(s)	729, 747
Bme18I	GGWCC	3 cut(s)	571, 1403, 1520
BmeT110I	CYCGRG	2 cut(s)	151, 181
BmgT120I	GGNCC	4 cut(s)	384, 571, 1403, 1520
BmiI	GGNNCC	4 cut(s)	376, 726, 943, 1257
BmrFI	CCNGG	2 cut(s)	729, 747
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	5 cut(s)	514, 648, 1165, 1247, 1256
BmtI	GCTAGC	1 cut(s)	1221
BmuI	ACTGGG	1 cut(s)	449
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
BpmI	CTGGAG	3 cut(s)	404, 750, 1368
Bpu10I	CCTNAGC	3 cut(s)	1011, 1222, 1458
BpuEI	CTTGAG	1 cut(s)	1124
BsaAI	YACGTR	1 cut(s)	1003
BsaJI	CCNNGG	5 cut(s)	567, 668, 812, 1078, 1464
BsaWI	WCCGGW	1 cut(s)	1517
BsaXI	ACNNNNNCTCC	2 cut(s)	1366, 1396
Bsc4I	CCNNNNNNNGG	5 cut(s)	427, 466, 510, 689, 1487
Bse1I	ACTGG	4 cut(s)	444, 756, 785, 1385
BseBI	CCWGG	2 cut(s)	729, 747
BseDI	CCNNGG	5 cut(s)	567, 668, 812, 1078, 1464
BseGI	GGATG	5 cut(s)	457, 529, 821, 1090, 1156
BseLI	CCNNNNNNNGG	5 cut(s)	427, 466, 510, 689, 1487
BseMII	CTCAG	4 cut(s)	284, 1236, 1454, 1472
BseNI	ACTGG	4 cut(s)	444, 756, 785, 1385
BseYI	CCCAGC	2 cut(s)	120, 222
BshFI	GGCC	3 cut(s)	386, 1463, 1590
BshNI	GGYRCC	1 cut(s)	374
BsiHKCI	CYCGRG	2 cut(s)	151, 181
BsiSI	CCGG	2 cut(s)	362, 1518
BslI	CCNNNNNNNGG	5 cut(s)	427, 466, 510, 689, 1487
BsmAI	GTCTC	2 cut(s)	273, 488
BsmBI	CGTCTC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	1301
BsnI	GGCC	3 cut(s)	386, 1463, 1590
BsoBI	CYCGRG	2 cut(s)	151, 181
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	469, 941
Bsp19I	CCATGG	1 cut(s)	567
BspANI	GGCC	3 cut(s)	386, 1463, 1590
BspCNI	CTCAG	4 cut(s)	283, 1235, 1453, 1471
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	4 cut(s)	376, 726, 943, 1257
BspMAI	CTGCAG	3 cut(s)	594, 715, 1273
BspMI	ACCTGC	1 cut(s)	1183
BspOI	GCTAGC	1 cut(s)	1221
BspPI	GGATC	3 cut(s)	477, 936, 949
BspT107I	GGYRCC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	1328
BsrI	ACTGG	4 cut(s)	444, 756, 785, 1385
BssECI	CCNNGG	5 cut(s)	567, 668, 812, 1078, 1464
BssMI	GATC	2 cut(s)	469, 941
BssT1I	CCWWGG	5 cut(s)	567, 668, 812, 1078, 1464
Bst2UI	CCWGG	2 cut(s)	729, 747
Bst4CI	ACNGT	4 cut(s)	240, 333, 610, 632
Bst6I	CTCTTC	2 cut(s)	68, 86
BstBAI	YACGTR	1 cut(s)	1003
BstC8I	GCNNGC	1 cut(s)	1219
BstDEI	CTNAG	6 cut(s)	270, 1011, 1146, 1222, 1440, 1458
BstDSI	CCRYGG	1 cut(s)	567
BstENI	CCTNNNNNAGG	1 cut(s)	1485
BstF5I	GGATG	5 cut(s)	457, 529, 821, 1090, 1156
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	472, 944
BstMAI	GTCTC	2 cut(s)	273, 488
BstMBI	GATC	2 cut(s)	469, 941
BstNI	CCWGG	2 cut(s)	729, 747
BstSCI	CCNGG	2 cut(s)	727, 745
BstSFI	CTRYAG	4 cut(s)	590, 711, 777, 1269
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BsuI	GTATCC	1 cut(s)	1051
BsuRI	GGCC	3 cut(s)	386, 1463, 1590
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	5 cut(s)	457, 529, 821, 1090, 1156
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	2 cut(s)	637, 708
BveI	ACCTGC	1 cut(s)	1183
Cac8I	GCNNGC	1 cut(s)	1219
CaiI	CAGNNNCTG	1 cut(s)	598
CciI	TCATGA	1 cut(s)	654
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	4 cut(s)	384, 571, 1403, 1520
CseI	GACGC	2 cut(s)	705, 1061
Csp6I	GTAC	5 cut(s)	445, 561, 696, 1033, 1317
CviAII	CATG	6 cut(s)	568, 655, 973, 986, 1045, 1345
CviQI	GTAC	5 cut(s)	445, 561, 696, 1033, 1317
DdeI	CTNAG	6 cut(s)	270, 1011, 1146, 1222, 1440, 1458
DpnI	GATC	2 cut(s)	471, 943
DpnII	GATC	2 cut(s)	469, 941
DraI	TTTAAA	1 cut(s)	912
DraIII	CACNNNGTG	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	1588
Eam1104I	CTCTTC	2 cut(s)	68, 86
EarI	CTCTTC	2 cut(s)	68, 86
Eco130I	CCWWGG	5 cut(s)	567, 668, 812, 1078, 1464
Eco147I	AGGCCT	1 cut(s)	1463
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	3 cut(s)	571, 1403, 1520
Eco57I	CTGAAG	1 cut(s)	480
Eco72I	CACGTG	1 cut(s)	1003
Eco88I	CYCGRG	2 cut(s)	151, 181
EcoNI	CCTNNNNNAGG	1 cut(s)	1485
EcoRII	CCWGG	2 cut(s)	727, 745
EcoT14I	CCWWGG	5 cut(s)	567, 668, 812, 1078, 1464
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	5 cut(s)	567, 668, 812, 1078, 1464
Esp3I	CGTCTC	1 cut(s)	488
FaeI	CATG	6 cut(s)	571, 658, 976, 989, 1048, 1348
FaiI	YATR	9 cut(s)	437, 569, 656, 779, 801, 974, 987, 1046, 1346
FatI	CATG	6 cut(s)	567, 654, 972, 985, 1044, 1344
FauI	CCCGC	1 cut(s)	1110
FokI	GGATG	5 cut(s)	464, 536, 808, 1097, 1143
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	5 cut(s)	477, 1079, 1218, 1445, 1542
GlaI	GCGC	1 cut(s)	27
GsaI	CCCAGC	2 cut(s)	124, 226
GsuI	CTGGAG	3 cut(s)	404, 750, 1368
HaeIII	GGCC	3 cut(s)	386, 1463, 1590
HapII	CCGG	2 cut(s)	362, 1518
HgaI	GACGC	2 cut(s)	705, 1061
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	6 cut(s)	571, 658, 976, 989, 1048, 1348
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	761
HindII	GTYRAC	1 cut(s)	761
HinfI	GANTC	4 cut(s)	358, 401, 412, 491
HpaII	CCGG	2 cut(s)	362, 1518
HphI	GGTGA	1 cut(s)	881
Hpy166II	GTNNAC	4 cut(s)	345, 761, 1000, 1319
Hpy188I	TCNGA	1 cut(s)	919
Hpy188III	TCNNGA	6 cut(s)	421, 542, 655, 1103, 1206, 1224
Hpy8I	GTNNAC	4 cut(s)	345, 761, 1000, 1319
Hpy99I	CGWCG	2 cut(s)	1077, 1596
HpyAV	CCTTC	4 cut(s)	148, 213, 838, 1332
HpyCH4III	ACNGT	4 cut(s)	240, 333, 610, 632
HpyCH4IV	ACGT	3 cut(s)	664, 1002, 1594
HpyF3I	CTNAG	6 cut(s)	270, 1011, 1146, 1222, 1440, 1458
HpySE526I	ACGT	3 cut(s)	664, 1002, 1594
Hsp92II	CATG	6 cut(s)	571, 658, 976, 989, 1048, 1348
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	469, 941
LmnI	GCTCC	9 cut(s)	423, 544, 595, 730, 731, 909, 1261, 1333, 1387
LweI	GCATC	5 cut(s)	514, 648, 1165, 1247, 1256
MaeI	CTAG	5 cut(s)	477, 1079, 1218, 1445, 1542
MaeII	ACGT	3 cut(s)	664, 1002, 1594
MaeIII	GTNAC	3 cut(s)	368, 621, 717
MalI	GATC	2 cut(s)	471, 943
MbiI	CCGCTC	1 cut(s)	1328
MboI	GATC	2 cut(s)	469, 941
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	6 cut(s)	284, 555, 843, 913, 1179, 1578
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	1184
MseI	TTAA	1 cut(s)	911
MspI	CCGG	2 cut(s)	362, 1518
MspR9I	CCNGG	2 cut(s)	729, 747
MunI	CAATTG	1 cut(s)	843
Mva1269I	GAATGC	1 cut(s)	1301
MvaI	CCWGG	2 cut(s)	729, 747
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	2 cut(s)	469, 941
NheI	GCTAGC	1 cut(s)	1217
NlaIII	CATG	6 cut(s)	571, 658, 976, 989, 1048, 1348
NlaIV	GGNNCC	4 cut(s)	376, 726, 943, 1257
NmuCI	GTSAC	1 cut(s)	717
PagI	TCATGA	1 cut(s)	654
PceI	AGGCCT	1 cut(s)	1463
PcsI	WCGNNNNNNNCGW	1 cut(s)	1588
PctI	GAATGC	1 cut(s)	1301
PfeI	GAWTC	3 cut(s)	401, 412, 491
PflMI	CCANNNNNTGG	1 cut(s)	466
PfoI	TCCNGGA	1 cut(s)	727
PleI	GAGTC	1 cut(s)	352
PmaCI	CACGTG	1 cut(s)	1003
PmlI	CACGTG	1 cut(s)	1003
PpsI	GAGTC	1 cut(s)	352
Ppu21I	YACGTR	1 cut(s)	1003
Psp6I	CCWGG	2 cut(s)	727, 745
PspCI	CACGTG	1 cut(s)	1003
PspFI	CCCAGC	2 cut(s)	120, 222
PspGI	CCWGG	2 cut(s)	727, 745
PspN4I	GGNNCC	4 cut(s)	376, 726, 943, 1257
PspPI	GGNCC	4 cut(s)	384, 571, 1403, 1520
PstI	CTGCAG	3 cut(s)	594, 715, 1273
PstNI	CAGNNNCTG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	941
RsaI	GTAC	5 cut(s)	446, 562, 697, 1034, 1318
RsaNI	GTAC	5 cut(s)	445, 561, 696, 1033, 1317
SaqAI	TTAA	1 cut(s)	911
Sau3AI	GATC	2 cut(s)	469, 941
Sau96I	GGNCC	4 cut(s)	384, 571, 1403, 1520
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	2 cut(s)	729, 747
SduI	GDGCHC	1 cut(s)	188
SfaNI	GCATC	5 cut(s)	514, 648, 1165, 1247, 1256
SfcI	CTRYAG	4 cut(s)	590, 711, 777, 1269
SinI	GGWCC	3 cut(s)	571, 1403, 1520
SmlI	CTYRAG	1 cut(s)	1103
SmoI	CTYRAG	1 cut(s)	1103
Sse9I	AATT	6 cut(s)	284, 555, 843, 913, 1179, 1578
SseBI	AGGCCT	1 cut(s)	1463
SspMI	CTAG	5 cut(s)	477, 1079, 1218, 1445, 1542
StuI	AGGCCT	1 cut(s)	1463
StyD4I	CCNGG	2 cut(s)	727, 745
StyI	CCWWGG	5 cut(s)	567, 668, 812, 1078, 1464
TaaI	ACNGT	4 cut(s)	240, 333, 610, 632
TaiI	ACGT	3 cut(s)	667, 1005, 1597
TaqI	TCGA	1 cut(s)	516
TaqII	GACCGA	2 cut(s)	588, 1572
TasI	AATT	6 cut(s)	284, 555, 843, 913, 1179, 1578
TatI	WGTACW	2 cut(s)	1032, 1316
TauI	GCSGC	8 cut(s)	46, 256, 280, 295, 298, 301, 879, 1238
TfiI	GAWTC	3 cut(s)	401, 412, 491
Tru1I	TTAA	1 cut(s)	911
Tru9I	TTAA	1 cut(s)	911
TscAI	CASTG	2 cut(s)	637, 715
TseFI	GTSAC	1 cut(s)	717
Tsp45I	GTSAC	1 cut(s)	717
TspDTI	ATGAA	5 cut(s)	643, 1016, 1061, 1278, 1482
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	2 cut(s)	637, 715
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	3 cut(s)	571, 1403, 1520
XagI	CCTNNNNNAGG	1 cut(s)	1485
XapI	RAATTY	2 cut(s)	913, 1578
XmaJI	CCTAGG	1 cut(s)	1078
XspI	CTAG	5 cut(s)	477, 1079, 1218, 1445, 1542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.